BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64820.1
Length=1509
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907722 jgi|Araly1|907722|Al_scaffold_0002_803 2200 0.0
Ahg951906 jgi|Araly1|951906|scaffold_24700001.1 1291 0.0
Ahg925891 jgi|Araly1|925891|scaffold_201452.1 1230 0.0
Ahg925784 jgi|Araly1|925784|scaffold_201345.1 433 2e-120
> Ahg907722 jgi|Araly1|907722|Al_scaffold_0002_803
Length=1503
Score = 2200 bits (1191), Expect = 0.0
Identities = 1405/1510 (93%), Gaps = 8/1510 (1%)
Strand=Plus/Plus
Query 1 ATGGAAACGGATTTCTCGTTGGTGCGTAAGGAGGAGGAAGAAGAAGAAGATAACAGGAAT 60
||||||| ||||||||||||||||| ||| | || |||||||||||||||||||||
Sbjct 1 ATGGAAAAGGATTTCTCGTTGGTGC----GGA--ATGAGGAAGAAGAAGATAACAGGAAT 54
Query 61 GGGATGAGTTATTTGTCAATGGAGATGATGAAGAAGGTGAGCTCCATGGCGGCTCCAATG 120
||| ||||||||||||| |||||||||||||||||||||| |||||||| |||||||||
Sbjct 55 GGGGCGAGTTATTTGTCAGTGGAGATGATGAAGAAGGTGAGTTCCATGGCAGCTCCAATG 114
Query 121 GTGGCAGTTTCGGTTTCTCAATTCCTCCTTCAAGTCATCTCCATGGTTATGGCTGGTCAT 180
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 115 GTGGCAGTTTCGGTTTCTCAGTTCCTCCTGCAAGTCATCTCCATGGTTATGGCTGGTCAC 174
Query 181 TTGGACGAGCTCTCGCTCTCAGCTGTCGCAATTGCCACTTCCCTCACCAATGTCACTGGT 240
|||||||||||||| ||||||||||| ||||| |||||||||||||| |||||||| |||
Sbjct 175 TTGGACGAGCTCTCACTCTCAGCTGTTGCAATCGCCACTTCCCTCACTAATGTCACCGGT 234
Query 241 TTCAGCCTCATCGTTGGGTTTGCAGGTGCGTTAGACACTCTTTGCGGTCAAGCTTTTGGA 300
|| |||||||||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 235 TTTAGCCTCATCGTTGGGTTTGCAGGTGCGTTAGAGACTCTGTGTGGTCAAGCTTTTGGA 294
Query 301 GCAGAACAATTTGGAAAAATTGGTGCATACACTTACAGCTCAATGCTCTGTCTTCTCGTT 360
||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| ||
Sbjct 295 GCAGAACAATTTGGAAAAATTGGGGCATACACGTACAGCTCAATGCTTTGTCTTCTTGTC 354
Query 361 TTCTGTTTTTCAATCTCTATCGTATGGTTTTTCATGGACAAGCTCTTGGAGATTTTCCAT 420
||||||||| || ||||| | |||||| | ||||||||||| ||||||||| | ||||||
Sbjct 355 TTCTGTTTTCCAGTCTCTCTTGTATGGATCTTCATGGACAAACTCTTGGAGCTCTTCCAT 414
Query 421 CAAGATCCTCTCATCTCTCAATTAGCTTGCAGATACTCAATCTGGCTCATACCGGCTTTA 480
||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 415 CAAGATCCTCTAATCTCTCAGTTAGCTTGCAGATACTCAATCTGGCTAATACCGGCTTTA 474
Query 481 TTCGGATTCACTCTTCTTCAACCTATGACTCGGTATTTCCAGTCACAAGGAATAACTCTT 540
|||||||| |||||||||||||||||||| | |||||||||||||||||| ||| ||||
Sbjct 475 TTCGGATTTGCTCTTCTTCAACCTATGACTTGCTATTTCCAGTCACAAGGATTAATTCTT 534
Query 541 CCTCTCTTCGTGAGCTCTCTTGGAGCTCTTTGTTTTCACATTCCTTTCTGTTGGCTTCTT 600
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 535 CCTCTCTTCGTGAGCTCTCTTGGAGCTATCTGTTTTCACATTCCTTTCTGTTGGCTTCTT 594
Query 601 GTCTATAAACTGAAATTTGGAATAGTTGGCGCCGCTTTGTCCATCGGTTTTTCATATTGG 660
||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 595 GTCTATAAACTGAGATTTGGAATCGTTGGCGCCGCTTTGTCCATCGGGTTTTCATATTGG 654
Query 661 CTCAACGTATTTTTGCTTTGGATTTTCATGAGAT-ACTCTGCTTTGCATCGTGAAATGAA 719
|||||||| ||||||||| ||||||||||||| | |||||||||||||||||||||||||
Sbjct 655 CTCAACGTGTTTTTGCTTCGGATTTTCATGAG-TAACTCTGCTTTGCATCGTGAAATGAA 713
Query 720 GAATCTTGGTTTGCAAGAACTCATCTCGAGCATGAAGCAGTTCATCGCCCTCGCGATCCC 779
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 714 AAACCTTGGTTTGCAAGAACTCATCTCGAGCATGAAGCAGTTCATCGCCCTCGCTATCCC 773
Query 780 CTCTGCAATGATGATATGCCTGGAATGGTGGTCGTTTGAGATTCTACTACTAATGTCTGG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 CTCTGCAATGATGATATGCCTGGAATGGTGGTCGTTTGAGATTCTACTACTAATGTCTGG 833
Query 840 ACTCTTACCAAACTCAAAGCTCGAAACATCGGTGATATCCATTTGCCTCACAACATCGGC 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 ACTCTTACCAAACTCAAAGCTCGAAACATCGGTGATATCCATTTGCCTCACAACATCGGC 893
Query 900 TGTGCATTTCGTTCTGGTGAATGCGATAGGAGCATCCGCAAGCACACATGTCTCAAACGA 959
| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 894 TTTGCATTTCGTTCTGGTGAATGCGATAGGAGCATCCGCAAGCACATATGTTTCAAACGA 953
Query 960 GCTAGGAGCTGGAAATCATAGGGCAGCTCGAGCCGCGGTTAATTCTGCCATTTTCCTTGG 1019
|||||||||||||||||| |||||||||||||| ||||||| ||| || |||||||| ||
Sbjct 954 GCTAGGAGCTGGAAATCACAGGGCAGCTCGAGCGGCGGTTAGTTCGGCTATTTTCCTGGG 1013
Query 1020 TGGTGTTGGTGCATTAATAACAACCATCACACTTTACAGTTACCGAAAAAGTTGGGGTTA 1079
|||||||| |||| |||| ||| |||||||||||||||||||||||| |||||||||||
Sbjct 1014 TGGTGTTGATGCAACAATAGCAAGCATCACACTTTACAGTTACCGAAATAGTTGGGGTTA 1073
Query 1080 TGTATTCAGCAACGAGAGAGAAGTGGTTCGCTACGCAACCCAAATCACACCCATTCTCTG 1139
| ||||||||||||||| |||||||| || ||||| ||||||||||||||||||||||||
Sbjct 1074 TATATTCAGCAACGAGAAAGAAGTGGCTCACTACGTAACCCAAATCACACCCATTCTCTG 1133
Query 1140 CCTATCCATTTTCGTTAACAGCTTTCTCGCCGTGCTCTCAGGGGTTGCCAGAGGATCAGG 1199
||||| |||||||||||||| ||||| |||||||| |||||||||||||||||| ||||
Sbjct 1134 CCTATTTATTTTCGTTAACAGTTTTCTTGCCGTGCTATCAGGGGTTGCCAGAGGAACAGG 1193
Query 1200 GTGGCAACGTATAGGAGGTTATGCAAGCTTAGGATCATATTATCTTGTCGGAATCCCGTT 1259
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1194 CTGGCAACGTATAGGAGGTTATGCAAGTTTAGGATCATATTATCTTGTCGGAATCCCGTT 1253
Query 1260 AGGATGGTTCTTGTGTTTTGTCATGAAATTGAGAGGGAAAGGACTTTGGATTGGTATACT 1319
||| ||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1254 AGGTTGGATCTTGTGTTTTGTCATGAAGTTGAGAGGAAAAGGACTTTGGATTGGTATACT 1313
Query 1320 CATAGCCTCCACTATCCAACTCATTGTTTTTGCTCTTGTCACCTTCTTCACCAATTGGGA 1379
||||||||||||||||||||| | ||||||| | ||||||||||||||||||||||||||
Sbjct 1314 CATAGCCTCCACTATCCAACTAAGTGTTTTTACCCTTGTCACCTTCTTCACCAATTGGGA 1373
Query 1380 ACAAGAGGCAACGAAAGCTAGAGACAGAGTATTCGAGATGACACCTCAAGTCAAAGGCAA 1439
|||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1374 ACAAGAGGCAACGAGAGCCAGAGACAGAGTATTCGAGATGACACCACAAGTCAAAGGCAA 1433
Query 1440 CCAAAAAACACAAATTATAGTAGAAGAGGATACACAAGTTTTACTTAATCATATTGCAGA 1499
|||||| |||||||||||| | ||||||||||||||||||||||||||||||||| ||||
Sbjct 1434 CCAAAAGACACAAATTATATTGGAAGAGGATACACAAGTTTTACTTAATCATATTACAGA 1493
Query 1500 AACTGTGTAA 1509
|||||| |||
Sbjct 1494 AACTGTTTAA 1503
> Ahg951906 jgi|Araly1|951906|scaffold_24700001.1
Length=1497
Score = 1291 bits (699), Expect = 0.0
Identities = 1128/1334 (85%), Gaps = 34/1334 (3%)
Strand=Plus/Plus
Query 69 TTATTTGTCAATGGAGATGATGAAGAAGGTGAGCTCCATGGCGGCTCCAATGGTGGCAGT 128
||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 112 TTACTTGTCAATAGAGATGATGAAGAAGGTAAGCTCCATGGCTGCTCCAATGGTGGCTGT 171
Query 129 TTCGGTTTCTCAATTCCTCCTTCAAGTCATCTCCATGGTTATGGCTGGTCATTTGGACGA 188
| | |||||| | |||||||||||| |||||||| |||||||| ||||| ||||||||
Sbjct 172 GGCTGCTTCTCAGTACCTCCTTCAAGTTATCTCCATTGTTATGGCCGGTCACTTGGACGA 231
Query 189 GCTCTCGCTCTCAGCTGTCGCAATTGCCACTTCCCTCACCAATGTCACTGGTTTCAGCCT 248
|||||| ||||| || || || || || ||||| || ||||| ||||| || ||||||||
Sbjct 232 GCTCTCTCTCTCCGCCGTTGCTATCGCTACTTCTCTTACCAACGTCACCGGCTTCAGCCT 291
Query 249 CATCGTTGGGTTTGCAGGTGCGTTAGACACTCTTTGCGGTCAAGCTTTTGGAGCAGAACA 308
| || |||| || |||||||| ||||| || || || ||||||||||||||||| || ||
Sbjct 292 CCTCTTTGGATTGGCAGGTGCATTAGAGACACTGTGTGGTCAAGCTTTTGGAGCTGAGCA 351
Query 309 ATTT-GGAAAAATTGGTGCATACACTTACAGCTCAATGCTCTGTCTTCTCGTT-TTCTGT 366
|||| || ||| | ||||||| |||||| |||||||||| ||||||||| || ||||||
Sbjct 352 ATTTAGG-AAAGTCAGTGCATATACTTACGGCTCAATGCTATGTCTTCTC-TTGTTCTGT 409
Query 367 TTTTCAATCT--CTATCGTATGGTTTTTCATGGACAAGCTCTTGGAGATTTTCCATCAAG 424
||| |||||| || | || ||| ||| |||||||| ||||||||| ||||||||||||
Sbjct 410 TTTCCAATCTCACTTTTGT-GGGTGTTT-ATGGACAAACTCTTGGAGCTTTTCCATCAAG 467
Query 425 ATCCTCTCATCTCTCAATTAGCTTGCAGATACTCAATCTGGCTCATACCGGCTTTATTCG 484
||||||||||||||||| ||||||| ||||| || |||||||| ||||||||||||||||
Sbjct 468 ATCCTCTCATCTCTCAACTAGCTTGTAGATATTCGATCTGGCTTATACCGGCTTTATTCG 527
Query 485 GATTCACTCTTCTTCAACCTATGACTCGGTATTTCCAGTCACAAGGAATAACTCTTCCTC 544
||| | || |||||||| |||||||||||| |||||||||||||||| | ||||||||
Sbjct 528 GATACTCTGTTCTTCAATCTATGACTCGGTTTTTCCAGTCACAAGGATTGGTTCTTCCTC 587
Query 545 TCTTCGTGAGCTCTCTTGGAGCTCTTTGTTTTCACATT-CCTTTCTGTTGGCTTCTTGTC 603
||||| |||||||||| |||||||| |||||||||||| ||||| ||||||||||| |||
Sbjct 588 TCTTCTTGAGCTCTCTCGGAGCTCTCTGTTTTCACATTCCCTTT-TGTTGGCTTCTAGTC 646
Query 604 TATAAACTGAAATTTGGAATAGTTGGCGCCGCTTTGTCCATCGGTTTTTCATATTGGCTC 663
|||||||||| ||||||||| || ||||| ||||||||||| |||||||| |||||||||
Sbjct 647 TATAAACTGAGATTTGGAATCGTCGGCGCTGCTTTGTCCATAGGTTTTTCGTATTGGCTC 706
Query 664 AACGTATTTTTGCTTTGGATTTTCATGAGATACTCTGCTTTGCATCGTG-AAA-TGAAGA 721
|||||| |||||||||| ||||||||||| | |||||| | |||| | ||| || ||
Sbjct 707 AACGTAGGTTTGCTTTGGGTTTTCATGAGAAAATCTGCTCTATATCGCGAAAACTG--GA 764
Query 722 ATCTT-GGTTTGCAAGAACTCATCTCGAGCATGAAGCAGTTCATCGCCCTCGCGATCCCC 780
||||| || ||||||| | | | |||||||||||||||||| ||||||| || |||
Sbjct 765 ATCTTCGG-GCGCAAGAAATTTTTTTGAGCATGAAGCAGTTCATTACCCTCGCAATTCCC 823
Query 781 TCTGCAATGATGA-TATGCCTGGAATGGTGGTCGTTTGAGATTC-TACTACTAATGTCTG 838
||||||||||||| | ||||| |||||||||||||||||| ||| || |||||||||| |
Sbjct 824 TCTGCAATGATGACT-TGCCTAGAATGGTGGTCGTTTGAGCTTCTTA-TACTAATGTCAG 881
Query 839 GACTCTTACCAAACTCAAAGCTCGAAACATCGGTGATATCCATTTGCCTCACAACATCGG 898
||||||||||||||||||||||||||||||| || ||||||||||||| |||| |||
Sbjct 882 GACTCTTACCAAACTCAAAGCTCGAAACATCAGTCCTATCCATTTGCCTAACAATGTCGT 941
Query 899 CTGTGCATTTCGTTCTGGTGAATGCGATAGGAGCATCCGCAAGCACACATGTCTCAAACG 958
|| | |||| ||||||||||||||| ||||||||| |||| |||||||| |||||||||
Sbjct 942 CTCTCCATTACGTTCTGGTGAATGCAATAGGAGCAGCCGCGAGCACACACGTCTCAAACA 1001
Query 959 AGCTAGGAGCTGGAAATC-ATAGGGCAGCTCGAGCCGCGGTTAATTCTGCCATTTTCCTT 1017
|||||||||||||||||| | ||| ||||||||||||||| ||||||||| ||||| ||
Sbjct 1002 AGCTAGGAGCTGGAAATCCAAAGG-CAGCTCGAGCCGCGGCTAATTCTGCGATTTTTCTA 1060
Query 1018 GGTGGTG-TTGGTGCATTAATAACAACCATCACACTTTACAGTTACCGAAA--AAGTTGG 1074
|| | || ||| |||| |||| || |||||| || || || || ||| || ||||
Sbjct 1061 GGCG-TGATTGATGCAGCAATAGTAAGCATCACTCTCTATAGCAACA-AAAGTAA-TTGG 1117
Query 1075 GGTTATGTATTCAGCAACGAGAGAGAAGTGGTTCG-CTACGCAACCCAAATCACACCCAT 1133
| |||| |||||||||||||||| ||||| | | | ||| | ||| |||||||||||| |
Sbjct 1118 GCTTATATATTCAGCAACGAGAGTGAAGTCGCT-GACTATGTAACTCAAATCACACCCTT 1176
Query 1134 TCTCTGCCTATCCATTT-TCGTTAACAGCTTTCTCGCCGTGCTCTCAGGGGTTGCCAGAG 1192
||| |||||||| ||| | ||| |||||||||||||||| |||||||| ||||| ||||
Sbjct 1177 TCTATGCCTATCAATTGGT-GTTGACAGCTTTCTCGCCGTACTCTCAGGAGTTGCTAGAG 1235
Query 1193 GATCAGGGTGGCAACGTATAGGAGGTTATGCAAGCTTAGGATCATATTATCTTGTCGGAA 1252
|| |||||||||||| |||||||| |||||||| | |||||||||||||||| ||||| |
Sbjct 1236 GAACAGGGTGGCAACATATAGGAGCTTATGCAAACATAGGATCATATTATCTGGTCGGGA 1295
Query 1253 TCCCGTTAGGATGGTTCTTGTGTTTTGTCATGAAATTGAGAGGGAAAGGACTTTGGATTG 1312
||||| |||| | | |||||||||| || |||||||||||||||||||||||||||| |
Sbjct 1296 TCCCGGTAGGTTCGATCTTGTGTTTCGTTGTGAAATTGAGAGGGAAAGGACTTTGGATCG 1355
Query 1313 GTATACTCATAGCCTCCACTATCCAA-CTCATTGTTTTTGCTCTTGTCACCTTCTTCACC 1371
||||| | || | ||| ||| | ||| | |||||| ||||||||||||| |||||||||
Sbjct 1356 GTATATTGATTGGCTCTACTTTACAAACG-ATTGTTCTTGCTCTTGTCACTTTCTTCACC 1414
Query 1372 AATTGGGAACAAGA 1385
||||||||||||||
Sbjct 1415 AATTGGGAACAAGA 1428
> Ahg925891 jgi|Araly1|925891|scaffold_201452.1
Length=1524
Score = 1230 bits (666), Expect = 0.0
Identities = 1198/1450 (83%), Gaps = 56/1450 (4%)
Strand=Plus/Plus
Query 82 GAGATGATGAAGAAGGTGAGCTCCATGGCGGCTCCAATGGTGGCAGTTTCGGTTTCTCAA 141
||||||||||||||||| |||| ||||| |||||||||||||| || | | ||||||
Sbjct 88 GAGATGATGAAGAAGGTAAGCTTTATGGCTGCTCCAATGGTGGCTGTGGCTGCTTCTCAG 147
Query 142 TTCCTCCTTCAAGTCATCTCCATGGTTATGGCTGGTCATTTGGACGAG--CTCTCGCTCT 199
| |||||||||||| |||||||| |||||||| ||||| ||||||||| ||||| ||||
Sbjct 148 TACCTCCTTCAAGTTATCTCCATTGTTATGGCCGGTCACTTGGACGAGCTCTCTCTCTCT 207
Query 200 CAGCTGTCGCAATTGCCACTTCCCTCACCAATGTCACTGGTTTCAGCCTCATCGTTGGGT 259
| || || || || || ||||| || ||||| ||||| | || |||| |||| |
Sbjct 208 CCGCCGTTGCTATCGCTACTTCTCTTACCAACGTCAC------CGGCTTCAT--TTGGAT 259
Query 260 TTGCAGGTGCGTTAGACACTCTTTGCGGTCAAGCTTTTGGAGCAGAACAATTT-GGAAAA 318
| |||||||||||||| || || || |||||||||||||||||||| |||||| || |||
Sbjct 260 TGGCAGGTGCGTTAGAGACACTGTGTGGTCAAGCTTTTGGAGCAGAGCAATTTAGG-AAA 318
Query 319 ATTGGTGCATACACTTACAGCTCAATGCTCTGTCTTCTCGTT-TTCTGTTTTTCAATCT- 376
|| |||||||||||||| ||||||||||| ||||||||| || || ||||| ||||||
Sbjct 319 ATCGGTGCATACACTTATAGCTCAATGCTATGTCTTCTC-TTGTTTTGTTTCCCAATCTC 377
Query 377 -CTATCGTATGGTTTTTCATGGACAAGCTCTTGGAGATTTTCCATCAAGATCCTCTCATC 435
|| | || ||||||| |||||||| || |||||| |||||||||||||||||||||||
Sbjct 378 ACTTTTGT-GGGTTTTT-ATGGACAAACTATTGGAGCTTTTCCATCAAGATCCTCTCATC 435
Query 436 TCTCAATTAGCTTGCAGATACTCAATCTGGCTCATACCGGCTTTATTCGGATTCACTCTT 495
||||| ||||| || ||||| || |||||||| ||||||||||||||||||| | || ||
Sbjct 436 TCTCATTTAGCGTGTAGATATTCGATCTGGCTTATACCGGCTTTATTCGGATACTCTGTT 495
Query 496 CTTCAACCTATGACTCGGTATTT-CCAGTCACAAGGAATAACTCTTCCTCTCTTCGTGAG 554
|||||| |||||||||||| ||| ||||||||||||| | ||| ||||||||| ||||
Sbjct 496 CTTCAATCTATGACTCGGT-TTTCCCAGTCACAAGGATTGGTTCTACCTCTCTTCTTGAG 554
Query 555 CTCTCTTGGAGCTCTTTGTTTTCACATT-CC-TTTCTGTTGGCTTCTTGTCTATAAACTG 612
|||||| |||||||| ||||||||||| || |||| | ||||||||||| |||||||||
Sbjct 555 CTCTCTCGGAGCTCTCAGTTTTCACATTCCCTTTTC-G-TGGCTTCTTGTTTATAAACTG 612
Query 613 AAATTTGGAATAGTT-GGCGCCGCTTTGTCCATCGGTTTTTCATATTGGCTCAACGTATT 671
| ||||||||| || ||| | ||||||||||| |||||||| |||||||||||||||
Sbjct 613 AGATTTGGAAT-CTTCGGCTCTGCTTTGTCCATAGGTTTTTCGTATTGGCTCAACGTAGG 671
Query 672 TTTGCTTTGGATTTTCATGAGATACTCTGCTTTGCATCGTGAAATGAAGAATCTT-GGTT 730
|||||||||| ||||||||||| | | || | || |||| |||| | ||||||| ||
Sbjct 672 TTTGCTTTGGGTTTTCATGAGAGATTTTGATCTGTATCGCGAAAACAGGAATCTTCGG-G 730
Query 731 TGCAAGAACTCATCTCGAGCATGAAGCAGTTCATCGCCCTCGCGATCCCCTCTGCAATGA 790
||||||| || | | |||||||||||||||||| ||||||| || |||||||| ||||
Sbjct 731 CGCAAGAAATCTTTTTGAGCATGAAGCAGTTCATTACCCTCGCAATTCCCTCTGCGATGA 790
Query 791 TGA-TATGCCTGGAATGGTGGTCGTTTGAGATTC-TACTACTAATGTCTGGACTCTTACC 848
||| | |||||||||||||||||||||||| ||| || |||||||||| |||||||||||
Sbjct 791 TGACT-TGCCTGGAATGGTGGTCGTTTGAGCTTCTTA-TACTAATGTCCGGACTCTTACC 848
Query 849 AAACTCAAAGCTCGAAACATCGGTGAT-ATCCATTTGCCTCACAACATCGGCTGTGCATT 907
|||||||||||||||||||||||| || |||||||||||| |||| ||| || ||||||
Sbjct 849 AAACTCAAAGCTCGAAACATCGGT-ATTATCCATTTGCCTAACAATGTCGTCTCTGCATT 907
Query 908 TCGTTCTGGTGAATGCGATAGGAGCATCCGCAAGCACACATGTCTCAAACGAGCTAGGAG 967
|||| | |||||||| ||||||||| |||| |||||||| ||||||||| |||||||||
Sbjct 908 ACGTTATTGTGAATGCAATAGGAGCAGCCGCGAGCACACACGTCTCAAACAAGCTAGGAG 967
Query 968 CTGGAAATCATAGGGCAGCTCGAGCCGCGGTTAATTCTGCCATTTTCCTTGGTGGTG-TT 1026
||||||||| | |||||||||||||| | | ||||||| ||||| || | | || ||
Sbjct 968 CTGGAAATCCGAAGGCAGCTCGAGCCGTTGCTGATTCTGCGATTTTTCTCAGCG-TGATT 1026
Query 1027 GGTGCATTAATAACAACCATCACACTTTACAGT-TACCGAA-AAAGTTGGGGTTATGTAT 1084
| |||| ||| || |||||| || || | ||||||| ||| ||||| |||| |||
Sbjct 1027 GATGCAGCCATAGTAAGCATCACTCTCTAT-GCCTACCGAAGAAA-TTGGGCTTATATAT 1084
Query 1085 TCAGCAACGAGAGAGAAGTGGTTCG-CTACGCAACCCAAATCACACCCATTCTCTGCCTA 1143
|||| || ||||| ||||| | | | ||| | ||| |||||||||||| |||| ||||||
Sbjct 1085 TCAGTAATGAGAGTGAAGTCGCT-GACTATGTAACTCAAATCACACCCTTTCTATGCCTA 1143
Query 1144 TCCATTT-TCGTTAACAGCTTTCTCGCCGTGCTCTCAGGGGTTGCCAGAGGATCAGGGTG 1202
|| ||| | ||| |||||||||||||||| |||||||| ||||| |||||| |||||||
Sbjct 1144 TCAATTGGT-GTTGACAGCTTTCTCGCCGTACTCTCAGGAGTTGCTAGAGGAACAGGGTG 1202
Query 1203 GCAACGTATAGGAGGTTATGCAAGCTTAGGATCATATTATCTTGTCGGAATCCCGTTAGG 1262
||||| |||||||| |||||||| | |||| ||||||||||| ||||| |||||| ||||
Sbjct 1203 GCAACATATAGGAGCTTATGCAAACATAGGGTCATATTATCTGGTCGGTATCCCGGTAGG 1262
Query 1263 ATGGTTCTTGTGTTTTGTCATGAAATTGAGAGGGAAAGGACTTTGGATTGGTATACTCAT 1322
| | |||||||||| || |||||||||||||||||||||||||||| |||||| | ||
Sbjct 1263 TTCGATCTTGTGTTTCGTTGTGAAATTGAGAGGGAAAGGACTTTGGATCGGTATATTGAT 1322
Query 1323 AGCCTCCACTATCCAA-CTCATTGTTTTTGCTCTTGTCACCTTCTTCACCAATTGGGAAC 1381
| ||| ||| | ||| | |||||| ||||||||||||| |||||||||||||||||||
Sbjct 1323 TGGCTCTACTTTACAAACG-ATTGTTCTTGCTCTTGTCACTTTCTTCACCAATTGGGAAC 1381
Query 1382 AAGAGGCAACGAAAGCTAGAGACAGAGTATTCGAGATGACACCTCAAGTCAAAGGCAACC 1441
|||||||| ||| ||||||||||||||| |||||||||| ||| ||| ||||| |
Sbjct 1382 AAGAGGCAGTGAAGGCTAGAGACAGAGTAACCGAGATGACA--TCA---CAA-GGCAATC 1435
Query 1442 AAAAAACACAAATTATAGTAGAAGAGGATACACAAGTTTTACTTAATC-ATAT-TGCAGA 1499
|| |||| |||| ||| || |||||||| ||||| |||| |||| |||| | ||||
Sbjct 1436 AAGTAACAGAAATGATATTAAAAGAGGATGTACAAGGTTTA-TTAAAAGATATCT-CAGA 1493
Query 1500 AACTGTGTAA 1509
|| |||||||
Sbjct 1494 AAATGTGTAA 1503
> Ahg925784 jgi|Araly1|925784|scaffold_201345.1
Length=635
Score = 433 bits (234), Expect = 2e-120
Identities = 364/426 (85%), Gaps = 12/426 (3%)
Strand=Plus/Plus
Query 217 ACTTCCCTCACCAATGTCACTGGTTTCAGCCTCATCGTTGGGTTTGCAGGTGCGTTAGAC 276
||||| || ||||| ||||| || ||||||||| || |||| || ||||||||||||||
Sbjct 147 ACTTCTCTTACCAACGTCACCGGCTTCAGCCTCCTCTTTGGATTGGCAGGTGCGTTAGAG 206
Query 277 ACTCTTTGCGGTCAAGCTTTTGGAGCAGAACAATTT-GGAAAAATTGGTGCATACACTTA 335
|| || || ||||||||||||||||| || |||||| || ||||| ||||||||||||||
Sbjct 207 ACACTGTGTGGTCAAGCTTTTGGAGCTGAGCAATTTAGG-AAAATCGGTGCATACACTTA 265
Query 336 CAGCTCAATGCTCTGTCTTCTCGTT-TTCTGTTTTTCAATCT--CTATCGTATGGTTTTT 392
||||||||||| ||||||||| || || ||||| |||||| || | || |||||||
Sbjct 266 TAGCTCAATGCTATGTCTTCTC-TTGTTTTGTTTCCCAATCTCACTTTTGT-GGGTTTTT 323
Query 393 CATGGACAAGCTCTTGGAGATTTTCCATCAAGATCCTCTCATCTCTCAATTAGCTTGCAG 452
|||||||| || |||||| |||||||||||||||||||||||||||| |||||||| ||
Sbjct 324 -ATGGACAAACTATTGGAGCTTTTCCATCAAGATCCTCTCATCTCTCATTTAGCTTGTAG 382
Query 453 ATACTCAATCTGGCTCATACCGGCTTTATTCGGATTCACTCTTCTTCAACCTATGACTCG 512
||| || |||||||| ||||||||||||||||||| | || |||||||| ||||||||||
Sbjct 383 ATATTCGATCTGGCTTATACCGGCTTTATTCGGATACTCTGTTCTTCAATCTATGACTCG 442
Query 513 GTATTTCCAGTCACAAGGAATAACTCTTCCTCTCTTCGTGAGCTCTCTTGGAGCTCTTTG 572
|| |||||||||||||||| | ||| ||||||||| |||||||||| |||||||| ||
Sbjct 443 GTTTTTCCAGTCACAAGGATTGGTTCTACCTCTCTTCTTGAGCTCTCTCGGAGCTCTCTG 502
Query 573 TTTTCACATT-CC-TTTCTGTTGGCTTCTTGTCTATAAACTGAAATTTGGAATAGTTGGC 630
|||||||||| || |||| | |||||||||||||||||||||| ||||||||| || ||
Sbjct 503 TTTTCACATTCCCTTTTC-G-TGGCTTCTTGTCTATAAACTGAGATTTGGAATCGTCAGC 560
Query 631 GCCGCT 636
|| |||
Sbjct 561 GCTGCT 566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56487833335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5