BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64850.1
Length=678
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925321 jgi|Araly1|925321|scaffold_200882.1 852 0.0
> Ahg925321 jgi|Araly1|925321|scaffold_200882.1
Length=531
Score = 852 bits (461), Expect = 0.0
Identities = 505/526 (96%), Gaps = 4/526 (1%)
Strand=Plus/Plus
Query 55 GAGAAGAAGATTATC-CATCGCCATGGGACAAGTCTTTAACAAGCTCCGAGGTAAAGAGT 113
||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGAAGAAGATCA-CTCATCGCCATGGGACAAGTCTTTAACAAGCTCCGAGGTAAAGAGT 59
Query 114 GGAGACATAAGCAGGTACAAGCGATATGTGATCGTGTTTTCGATCGGTTCAAGATGCAAA 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 60 GGAGACATAAGCAGGTACAAGCGATATGTGATCGTGTTTTCGATCGGTTCAAGATTCAAA 119
Query 174 CCGGAAGAGCCAATCTTACGTTTGAAGAGTTATACATCGCTGTTCTTCTCGTTTACAATG 233
|||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct 120 CCGGAAGAGCCAATCTTACGTTTGAAGAGTTATACATCGCGGTGCTTCTTGTTTACAATG 179
Query 234 ACATAAACAAGAGATTGCCTGGTCCTCATTTCGATCCACCTTCTAAGGATCTAGTCAATA 293
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 180 ACATAAACAAGAGATTGCCTGGTCCTCATTTCGATCCACCTTCTAAGGATCTTGTCAA-A 238
Query 294 GC-ATTATGACGGACTGTGATATCAACTTGGATGGAGAACTTGATAGGGAAGAGTTTGTG 352
|| ||||||||||| || ||||||||||||||||||||| |||||||||| |||||||||
Sbjct 239 GCCATTATGACGGATTGCGATATCAACTTGGATGGAGAAATTGATAGGGATGAGTTTGTG 298
Query 353 AAGTTTATTGAGCAGATTACGGCTGAGACGTTTAACGTGGTTAGTCAGGGTTTGATCATA 412
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 299 AAGTTTATTGAGCAGATTACGGCTGAGACATTTAACGTGGTGAGTCAGGGTTTGATCATA 358
Query 413 GCTTTGATTGTTGCTCCCACTGTGGCTATTGCGACGAAGAAGGCCACGGAAGGTGTCCCT 472
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TCTTTGATTGTGGCTCCAACTGTGGCTATTGCGACGAAGAAGGCCACGGAAGGTGTCCCG 418
Query 473 GGAGTTGGCAAAGTTGTGCAGAAGCTGCCTACTTCAATCTATGCTTCTCTTGTGACTCTT 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GGAGTTGGCAAAGTTGTGCAGAAGCTGCCTACTTCAATCTATGCTTCTCTTGTGACTCTT 478
Query 533 GCAGTTATGTGGGTGAATTCTGATTCAAGTTAAGCTTCTCATATTG 578
|||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 479 GCAGTTGTGTGGGTGAATTCTGATTCAAGTTAAGCTTCTCATATTG 524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24894264801
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5