BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64870.1
Length=915
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925324 jgi|Araly1|925324|scaffold_200885.1 1338 0.0
Ahg937181 jgi|Araly1|937181|scaffold_501372.1 438 3e-122
> Ahg925324 jgi|Araly1|925324|scaffold_200885.1
Length=952
Score = 1338 bits (724), Expect = 0.0
Identities = 854/917 (93%), Gaps = 7/917 (1%)
Strand=Plus/Plus
Query 1 ATGTCACATCCCACCGTAGAACAACTACATGCTTTCCATGCACAAGAAAGAGAGATATTC 60
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 21 ATGTCACATCCCACCATAGAACAACTACATGCTTTCCATGCACAAGACAGAGAGATTTTC 80
Query 61 TCTAAACTAGTTCAAAAACTCCGAAGACCACCAGCTGAGTCACTTCTTGTCATGGCCACA 120
||||||||||| | |||| | |||||||||||||||||||||||||||||||||||||
Sbjct 81 TCTAAACTAGTCCTAAAATTTTTAAGACCACCAGCTGAGTCACTTCTTGTCATGGCCACA 140
Query 121 TGGCTTTGGTTTGAAGACTTTGGCTTCGGAAACATTTTCTCCATCATCACGGTTTTTAGC 180
||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 141 TGGCTTTGGCTTGAAGACTTTGGCTTCGGAAACATTTTCTCCATCATCACAATTTTTAGC 200
Query 181 GATCTACTCATTGTAGATCTCGCTAACGAGGCTGTCTTGTGCTTTCGGTGCCTTGAATCT 240
|||||||| ||||||||||||||||||||||||||||||||||| | ||||||||| ||
Sbjct 201 GATCTACTAATTGTAGATCTCGCTAACGAGGCTGTCTTGTGCTTCCAGTGCCTTGAGTCC 260
Query 241 GACCAGCCCCCAAATGATGTCAGTCAGATCCCTCTCACCGAGAGATTCATGAAAAATGAC 300
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 261 GACCAGCCCCCAAATGATGTCAATCAGATCCCTCTCACCGAGAGATTCATGAAAAAGGAC 320
Query 301 ATATCCCTTCAAATAATCCACAATCATCGATACACTGCCATTACGGGAATAAAGAACTTT 360
||||||||||||||| ||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct 321 ATATCCCTTCAAATACTCCACAAACATCGATACACTGCCATTACAGGAATAAAAAACTTT 380
Query 361 TTAACCACTATTTGTTCTAGAATATTCTCTGATATCCTTCAACGAGTTCTTCCATCTTCA 420
|||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||
Sbjct 381 TTAACCACTATTTGTTCTCGAATTTTCTCTGATATCCTTCAACGAGTTCTTCCGCCTTCA 440
Query 421 TCATCCTCATTCATCACCAATCTCCGCCACCCTCTCATCATTCCCGGTTTCCCTCATCCA 480
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 441 TCATCCTCATTCATCACCAAAATCCGTCACCCTCTCATCATTCCCGGTTTCCCTCATCCG 500
Query 481 ACTTTTGGGAGCATCAACGTATTGCCTAATATCGTTGCTAGGGATAATCTTCCAAACGCA 540
||||||||||||||||| ||||||||| || ||||||| ||||||||||||| |||| ||
Sbjct 501 ACTTTTGGGAGCATCAATGTATTGCCTGATGTCGTTGCCAGGGATAATCTTCTAAACACA 560
Query 541 AATTCATTTCTTTTTCCTCATGGTCTTTGGGGCTGGAACGCTAACC-ATGTCGCGACTGA 599
|||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 561 AATTTATTTCTTTTTCCTCATGGTCTTTGGGGCTGGAACGCT-ACCTATGTCGCGACTGA 619
Query 600 TAAAGAACGGACGGTATTTCTAACGTTTTCTCGTGGTTTTCCCGTGTCACATGCTGAGGT 659
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 620 TAAAGAACGGACGGTATTTCTAACGTTTTCTCGTGGTTTTCCCGTGTCACAAGCTGAGGT 679
Query 660 G-ATTCATCTCTTCACCGAGATATATGGAGAAGATTGTGTCGAAAGCGTTTACATGCCAG 718
| || ||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||
Sbjct 680 GTAT-CATCTCTTCACCGAGATATATGGAGAAAATTGTGTTGAAAGCGTTTACATGCAAG 738
Query 719 AGGACGGTGGAAATTCCTCCAATGACAACACAAATTGCAATGGTCATCAGCAACAACCAC 778
|||| ||||| | ||||||||| || ||||| |||||||||||||| |||||||||||
Sbjct 739 AGGAAGGTGGTAGTTCCTCCAACGAAAACACCAATTGCAATGGTCA---GCAACAACCAC 795
Query 779 TATTCGCGAAGATGGTCTTGGACTCGGTTGTTACCGTAGATCGTATACTCAGCGGCCAGG 838
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 796 TATACGCGAAGATGGTCTTGGACTCGGTTGTTACCGTAGATCGTATACTCAACGGCGAGG 855
Query 839 AAAAACAAAAGTATAAGATCAATGGAAAGCATATTTGGGCTCGTAAGTTCAAGAATAATA 898
||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 856 AAAAAAAAAAGTATCGGATCAACGGAAAGCATATTTGGGCTCGTAAGTTCAAGAATAATA 915
Query 899 AAGACGGTCTTATCTAA 915
||||||||||||| |||
Sbjct 916 AAGACGGTCTTATTTAA 932
> Ahg937181 jgi|Araly1|937181|scaffold_501372.1
Length=935
Score = 438 bits (237), Expect = 3e-122
Identities = 703/920 (76%), Gaps = 63/920 (7%)
Strand=Plus/Plus
Query 1 ATGTCACATCCCACCGTAGAACAACTACATGCTTTCCATGCACAAGAAAGAGAGATATTC 60
||||| | || || || | || ||||||||| ||||||||| ||||| ||||| ||||||
Sbjct 22 ATGTCTCGTCTCAACGCACAAGAACTACATGTTTTCCATGCTCAAGATAGAGATATATTC 81
Query 61 TCTAAACTAGTTCAAAAACTCCGAAGACCACCAGCTGAGTCACTTCTTGTCATGGCCACA 120
|||||| | || | ||| || |||||| || |||||||||||||||||||||||||||
Sbjct 82 TCTAAATTGGTCCTCAAATTCTTAAGACCTCCGGCTGAGTCACTTCTTGTCATGGCCACA 141
Query 121 TGGCTTTGGTTTGAAGACTTTGGCTTCGGAAACATTTTCTCCATCATCACGGTTTTTAGC 180
||||||||| |||| ||||||||||| | |||||||||||| |||||| | | | |
Sbjct 142 TGGCTTTGGCTTGAGGACTTTGGCTTTGAAAACATTTTCTCAATCATC-CTCACTCTCCC 200
Query 181 -GATCTACTCATTGTAGATCTCGCTAACGAGGCTGTCTTGTGCTTTCGGTGCCTTGAATC 239
|||| ||||||||| | ||| |||||||||||||||| ||||||||||||||| | |
Sbjct 201 AGATCCACTCATTGTGGGTCTTGCTAACGAGGCTGTCTCATGCTTTCGGTGCCTTTATT- 259
Query 240 TGACCAG-CCCCCAAATGATGTCAGTCAGATCCCTCTCACCG-AGAGATTCATGAAAAAT 297
| | || ||||||| || | | | | ||||||||||||| | | || |||||||||
Sbjct 260 TCAGCAATCCCCCAATTG--GCC-G--A-ATCCCTCTCACCGCAAA-ATACATGAAAAA- 311
Query 298 GAC-ATATCCCTTCAAATAATCCACAATCATCGATACACTGCCATTACGGGAATAAAGAA 356
|| ||||| || |||| |||| |||| |||| || | ||| || || ||||| |||||
Sbjct 312 GAATATATCACTCCAAACAATCTACAAAAATCGCTATAGTGCTATCACAGGAATCAAGAA 371
Query 357 CTTTTTAACCACTATTTGTTCTAGAATATTCT-CTGATATCCTTCAACGAGTTCTTCCAT 415
||| ||||||||| ||||||| ||||| || | | || |||||| ||||||||||||||
Sbjct 372 CTTCTTAACCACTGTTTGTTCCAGAATCTT-TACCGACATCCTTTTACGAGTTCTTCCAT 430
Query 416 CTTCATCA-T-CCT-CATTC-ATCACCA-ATCTCCGCCACCCTC-TCATCATTCCCGGTT 469
|||| ||| | ||| | || | ||| | | || ||||| |||| | | || |||||||
Sbjct 431 CTTCTTCAATGCCTTCCTTTGA-CACAAGA-CTTCGCCAACCTCGT-AGAATCCCCGGTT 487
Query 470 TCCCTCATCCAACTTTTGGGA-GCATCAACGT-ATTGCCTAAT-ATCGTTGCTAGGGATA 526
|||||||||| | |||| ||| |||||||||| || ||||| | | |||| ||| ||||
Sbjct 488 TCCCTCATCCGA-TTTTCGGAAGCATCAACGTGAT-GCCTATTGAA-GTTGATAGAGATA 544
Query 527 ATCT-TCCAAACGCAAATTCATTTCTTTTTCCT-CATGGTCTTTGGGGCTGGAACGCTAA 584
|| | ||||| | || || |||| || ||| |||||||| |||||||||||||||||
Sbjct 545 ATTTCTCCAA-C--AACTT-ATTT-TTCATCCCACATGGTCTATGGGGCTGGAACGCTAA 599
Query 585 C--CATGTCGCGACTGATAAAGAACGGACGGTATTTCTAACGTTTTCTCGTGGTTTTCCC 642
||| ||| ||||| || || ||| | | ||| |||| ||||||||||||| |||
Sbjct 600 TTGCAT--CGCCACTGAGAATGATCGGTCCTTGTTTTTAACATTTTCTCGTGGTTATCCA 657
Query 643 GTGTCACATGCTGAGGTGATTC-ATCTCTTCACCGAG-ATATATGGAGAAGATTGTGTCG 700
||| | ||||| ||| | ||| | ||||| ||| || | |||||||||| ||||||| |
Sbjct 658 GTGACTCATGCAGAGAT-ATTTGAGCTCTTTACCAAGGA-ATATGGAGAAAATTGTGTTG 715
Query 701 AAAGCGTTTACATGCCAG-AGGACGGTGGAAATTCCTCC-AATGACAA-CACAAATTGCA 757
| | |||||||||| || | ||| ||| || ||| |||| ||| | | ||| | |
Sbjct 716 AGGGAGTTTACATGC-AGCATGACAACAAAAAATC-TCCCAATG-CAAACGCGAATAGGA 772
Query 758 ATGGTCATCAG-CAACAACCACTATTCGCGAAGATGGTCTTGGACTCGGTTGTTACCGTA 816
| | | | |||||| || ||||||||| | | ||| |||||||||||| ||||||
Sbjct 773 --GCTG--CGGGCAACAATCATTATTCGCGAGGCTTGTCATGGACTCGGTTGCTACCGTG 828
Query 817 GATCGTATACTC-AGCGGCCAGGAAAAACAAA-AG-TATAAGATCAATGGAAAGCATATT 873
|| || ||||| | |||| | | | | ||| || | | |||| || |||||| | |||
Sbjct 829 GACCGCGTACTCGA-CGGCGATCAGAGA-AAAGAGCT-TGAGATAAACGGAAAGAACATT 885
Query 874 TGGGCTCGTAAGTTCAAGAA 893
||||||||||||| | ||||
Sbjct 886 TGGGCTCGTAAGTACGAGAA 905
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33929396130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5