BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64880.1
Length=1985
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475487 jgi|Araly1|475487|fgenesh2_kg.2__617__AT1G64880.1 2837 0.0
> Ahg475487 jgi|Araly1|475487|fgenesh2_kg.2__617__AT1G64880.1
Length=1944
Score = 2837 bits (1536), Expect = 0.0
Identities = 1780/1894 (94%), Gaps = 31/1894 (2%)
Strand=Plus/Plus
Query 1 AAAAATCATTTCAGTCTTCTC-AAGGTTTTTGAAATTTCTATCTTCCATTTCCATCTGAT 59
|||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 1 AAAAATCATTTCTGTCTTCTCGAAGGTTTTTGAAATTTCTCTCTTCCATTTCCATCTGAT 60
Query 60 GAA--TCT--CTGACGATGTCTTTGAGAACTCGAGCATCGTCATGGCCTCGTCTTCTACT 115
||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 GAATCTCTGACTGACGATGTCTTTGAGAACTCGAGCATCGTCCTGGCCTCGTCTTCTACT 120
Query 116 TCGCCGGAACCCTAGATCTTCATTTTCTCGTCAGATATCTACTCTCGATTCCTCAACATC 175
||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||||||
Sbjct 121 TCGCCGGAACCCTAGATCTTCATTTTCCCGTCAAATCTCTACTCTTGATTCCTCAACATC 180
Query 176 AACATTTCCCAGAAGAATCTCCGGTTACTACTCCTCCTCCTTCTTTCCCGTAAATCAAAC 235
|||||||||||||||||||||||||||| ||||||||| ||| ||||||||||| ||
Sbjct 181 CACATTTCCCAGAAGAATCTCCGGTTACTCCTCCTCCTCGTTC---CCCGTAAATCATAC 237
Query 236 GCCATGGATCTCATCTCAGAGGTACCGTTTCTTCTCCTCAAGCACAATGTCACCATCGGA 295
||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 238 GCCATGGATCTCATCTCAGAGGTACCGTTTCTTTTCCTCATTCACAATGTCACCATCGGA 297
Query 296 AGCTGATagagtagtgagagaacttatagcagaggttgagaaagagaagcagcgtgagag 355
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 298 AGCTGATAGAGTAGTGAGAGATCTTATAGCGGAGGTTGAGAAAGAGAAGCAGCGTGAGAG 357
Query 356 agaggagagacaaagaCAAGGACTTGATTACAAAGACATTGATGCCGAAGACGAAGAAGA 415
||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 358 AGAGGAGAGGCAAAGACAAGGACTTGATTACAAAGACATTGATGCCGAAGACGAGGAGGA 417
Query 416 TTACTTAGGGATTGAGCCGTTTATCGAGAAGCTTAAGAAGCAGAATTTGAAAGATGATGG 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TTACTTAGGGATTGAGCCGTTTATCGAGAAGCTTAAGAAGCAGAATTTGAAAGATGATGG 477
Query 476 TGAATTAAATAGGCGTGAAGAGTCTTCTGATTCGGATAGTGAATATGATGAGATTGATTT 535
||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 478 TGAATTAAACAGGCGTGAAGAGTCGTCTGATTCTGATAGTGAATATGATGAGATTGATTT 537
Query 536 GGATGAAGAGAGGAAGAAAGAAGATATCTTTAATAAGAAGTTTCAGAGACATAAGGAGCT 595
||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 538 GGATGAAGAAAGGAAGAAAGAAGACATCTTTAATAAGAAGTTTCAGAGGCATAAGGAGCT 597
Query 596 TCTTCAGACTCTTACCAAGTCAGAGACACTTGATGAGGCATTTAGATGGATGAACAAATT 655
||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||
Sbjct 598 TCTTCAGACTCTTACCAAGTCAGAGACACTTGATGAGACGTTTAGGTGGATGAACAAATT 657
Query 656 AGACAAATTTGAGGAGAAGCATTTCAAGCTTAGACCTGAGTATAGGGTTATTGGTGAGCT 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 AGACAAATTTGAGGAGAAGCATTTCAAGCTTAGACCTGAGTATAGGGTTATTGGTGAGCT 717
Query 716 GATGAATCGTTTGAAGGTAGCTGAAGGGAAAGAGAAGTTTGTTCTGCAGCAGAAATTGAA 775
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 718 GATGAATCGTTTGAAGGTAGCTGAAGGGAAAGAAAAGTTTGTTCTACAGCAGAAATTGAA 777
Query 776 TAGAGCTATGAGGTTGGTTGAGTGGAAAGAGGCTTTTGATCCAAACAACCCTGCTAATTA 835
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 778 TAGAGCTATGAGGTTGGTTGAGTGGAAAGAGGCTTTTGATCCAAACAATCCTGCTAATTA 837
Query 836 TGGAGTTATTGAACGTGATAATGTTCAAGGTGGTGGTGAAGAAAGAGAAGAGCGTCTTGT 895
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 838 TGGAGTTATCGAACGTGATAATGTTCAAGGTGGTGGTGAGGAAAGAGAAGAGCGTCTTGT 897
Query 896 TGCTGATGGGCCTAAGgatgacaatgatgatgatgatgatgaagaggagtttgatgacat 955
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 898 TGTTGATGGGTCTAAGGATGACAATGATGATGATGATGATGAAGAGGAGTTTGATGATAT 957
Query 956 gaaagaaagggatgatATT-TTGTTGGAGAAGCTGAATGCGATTGACAAGAAACTTGAGA 1014
|||||||||||| |||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 958 GAAAGAAAGGGACGATATTCTT-TTGGAGAAGCTGAATGCAATTGACAAGAAACTTGAGC 1016
Query 1015 TTAAGCTTTCTGAGCTTGATCATACCTTTGGGAAGAAGGGGAAACGGTTGGAAGAGGAGA 1074
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1017 TTAAGCTTTCTGAGCTTGATCATACATTTGGAAAGAAGGGGAAACGGTTGGAAGAGGAGA 1076
Query 1075 TTAGAGAGCTGGCTGAAGACAGAAATGCTTTGACAGAGAAGAAAAGACAACCTTTATACA 1134
||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1077 TTAGAGAACTGGCTGAAGACAGAAATGCTTTGACAGAGAAGAAAAGGCAACCGTTATACA 1136
Query 1135 GAAAAGGATATGATGTGCATGTGATAGATGTaaaaaaaGTTTG-TAAGGTCACAAAGGGT 1193
|||||| |||||||||||||||||||||||| ||||||||| | ||||||||||||||||
Sbjct 1137 GAAAAGTATATGATGTGCATGTGATAGATGTTAAAAAAGTT-GCTAAGGTCACAAAGGGT 1195
Query 1194 GGCAGGGTTGAAAGGTACACTGCATTGATGGTTTGCGGAAACTATGAAGGTATCATTGGG 1253
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1196 GGCAGGGTTGAAAGGTACACTGCATTGATGGTTTGCGGAAATTATGAAGGTGTCATTGGG 1255
Query 1254 TATGCAAAAGCAAAAGCTGAGACTGGCCAATCTGCAATGCAGAAGGCATATGAGAAATGC 1313
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1256 TATGCGAAAGCAAAAGCTGAGACTGGCCAATCTGCAATGCAGAAGGCGTATGAGAAATGC 1315
Query 1314 TTTCAGAATCTTCATTACGTAGAGCGGCATGAGGAGCACACCATTGCACACGCAATACAG 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 TTTCAGAATCTTCATTACGTAGAGCGGCATGAGGAGCACACCATTGCACACGCAATACAG 1375
Query 1374 ACTTCTTACAAGAAAACCAAGTTATATCTGTGGCCTGCACCAACCACGACGGGAATGAAA 1433
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1376 ACTTCTTACAAGAAAACCAAGTTATATCTATGGCCTGCACCAACAACGACGGGAATGAAA 1435
Query 1434 GCTGGGAGAGTTGTCAAAACAATCTTGCTCCTAGCAGGGTTCAAAAATATCAAATCAAAG 1493
|||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct 1436 GCTGGGAGAGTTGTCAAAACAATCTTGCTCCTGGCGGGGTTCAAAAACATCAAATCAAAG 1495
Query 1494 GTGATTGGTTCAAGGAATTCATACAACACCGTTAAGGCAGTGTTGAAGGCCTTGAATGCG 1553
||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct 1496 GTGATTGGTTCAAGGAACTCATACAACACCGTTAAGGCGGTTTTGAAGGCCTTGAATGCG 1555
Query 1554 GTCGAAACACCAAAGGATGTTCAGGAGAAGTTTGGCCGGACAGTTGTTGAGAAATATCTG 1613
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 GTCGAAACGCCAAAGGATGTTCAGGAGAAGTTTGGCCGGACAGTTGTTGAGAAATATCTG 1615
Query 1614 CTGTGAGATCTGCAATTAACGCCT-TTGGGTATGTATTTGCTGAGTTTTGGTTGAAGTCT 1672
|||||||||||||| || |||| | |||| ||||||||||||||||||||| |||||| |
Sbjct 1616 CTGTGAGATCTGCA-TTCACGC-TATTGG-TATGTATTTGCTGAGTTTTGGATGAAGTTT 1672
Query 1673 AATGTTTGGCTTTAGATTAGTAGTGTGTTTCTTACTCTACAATTGAAAT--AT--TTTTA 1728
||| ||||||| |||||||||||||| |||||||||||||| ||||| | || |||||
Sbjct 1673 AATTTTTGGCTGTAGATTAGTAGTGTATTTCTTACTCTACAGTTGAA-TCCATCCTTTTA 1731
Query 1729 CGATGTTGGGGAAAAATAAAGA-AGTTAAGAATACACTATCCTTTCACCAATTTTATTAG 1787
||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||
Sbjct 1732 AGATGTTGGGGAAAAATAAA-ATAGTTAAGAATACACTATCCTTTCACCAATGCTATTAG 1790
Query 1788 CTTTAGTTCTGGTTTTGGTTCTGGTTCCT-GATACAATGTCG-TA-ATCGTCGTAGGAAC 1844
||||||| | ||| |||||| | ||| | | || | | | | | ||| | |||||||
Sbjct 1791 TTTTAGTTTTCGTTCTGGTTCCG-TTCTTCG-TA-A-TCTTGGTTGATCTTTTTAGGAAC 1846
Query 1845 -CTTGTTCAGTTTGGTTGTATTAGTACTCAAACG 1877
||| ||||||||||||||||| |||||||||||
Sbjct 1847 TCTTATTCAGTTTGGTTGTATTGGTACTCAAACG 1880
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74618789955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5