BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64890.1
Length=1774
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475488 jgi|Araly1|475488|fgenesh2_kg.2__618__AT1G64890.1 2126 0.0
> Ahg475488 jgi|Araly1|475488|fgenesh2_kg.2__618__AT1G64890.1
Length=1557
Score = 2126 bits (1151), Expect = 0.0
Identities = 1375/1482 (93%), Gaps = 19/1482 (1%)
Strand=Plus/Plus
Query 145 CCAAAATATCTTCCAGAAATTTTGAATTTAACTCCG-ACGA-CC-AAAAGAAGGAAACTG 201
|||||||||||||||||||||| |||||||||||| |||| || |||| ||||||||||
Sbjct 3 CCAAAATATCTTCCAGAAATTTCCAATTTAACTCCGTACGACCCAAAAAAAAGGAAACTG 62
Query 202 AA-AAAGACAATGAGCAGCAGCAGCGAT-ACTCATGCCGGAGAATCTCGTCATCGCCGTA 259
|| ||||||||| | |||||||||||| | |||||||||||||||||||||||||||||
Sbjct 63 AACAAAGACAAT--G-AGCAGCAGCGATGA-TCATGCCGGAGAATCTCGTCATCGCCGTA 118
Query 260 ACCCGATCCGGTGGCTACTCGG-TTTCGGTTTCTTCGTACAAGGATTCAGAGGATTCCCA 318
|||||||||||||||||||||| ||| |||||||||||||||||||| ||||| ||||||
Sbjct 119 ACCCGATCCGGTGGCTACTCGGCTTT-GGTTTCTTCGTACAAGGATTTAGAGGTTTCCCA 177
Query 319 TGGCTTGGAGCCAATTTCTTCCTCACAGAACAGCTCCGTGTTAATCCTTCAGTGCTTCAG 378
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 178 TGGCTTGGAGCCAATTTCTTCCTCACAGATGAGCTCCGTGTAAATCCTTCAGTGCTTCAG 237
Query 379 CTTCTTCAAAACTCAGCCAATCTTCCAATGGTCGCTAAACCCATCTACGGCGTCGTTTCA 438
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 238 CTTCTTCAAAACTCAGCCAATCTTCCAATGGTCGCTAAACCAATCTACGGCGTCGTTTCA 297
Query 439 GACTCTGTCTACTTCTTTGGCCAACATCGAATCCCATACATCGCCGTTGGAGCTTTGTTA 498
||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||
Sbjct 298 GACTCTGTCTACTTCTTTGGCCAACATCGAATCCCTTACATCGCTATTGGAGCCTTGTTA 357
Query 499 CAAGCAATCTCATGGCTAGCTATAGCATTCTTGTCAAGATCCAATGTATCAATCTTAGCT 558
|||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||||
Sbjct 358 CAAGCAATCTCATGGCTAGCAATAGCTTTCTTGTCAAGATCCAATGTGTCAATTTTAGCT 417
Query 559 TTATCGATATATCTTCTCCTTAGTAATCTCGGTGCTTCCTTAGTAGAAGTAGCGAATGAT 618
||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 418 TTATCAATATATCTTCTTCTTAGTAATCTCGGTGCTTCCTTAGTGGAAGTAGCGAATGAT 477
Query 619 GCTATTGTTGCTGAATCCGGAAAGCAAAAAACCTCAGAGACGCAATCCGGTGAGCTACCG 678
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 478 GCTATTGTTGCTGAGGCCGGAAAGCAAAAAATCTCAGAGACGCAATCCGGTGAGCTACCT 537
Query 679 TCATTTGTTTGGATGGTTTCTTCTCTTGGTGGAATCTTAGGTAACCTTTTAGGTGGTATT 738
|| ||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||
Sbjct 538 TCGTTTGTTTGGATGGCTTCTTCTCTTGGTGGAATCTTGGGAAACCTTTTAGGTGGTATT 597
Query 739 GCTATCAAAACGTTTTCAGCTCAGTCAACGTTTCTTGTGTTTGGGATCTTGGCTCTTCTT 798
||||| |||||| |||| |||| ||||||||| || ||||||||||| ||||||||||||
Sbjct 598 GCTATTAAAACGATTTCTGCTCGGTCAACGTTCCTCGTGTTTGGGATTTTGGCTCTTCTT 657
Query 799 CAGTTCTTGGTAACTATAAACATCAGAGAAAAGTCTCTTAATCTTCCGGAAAATCCATCA 858
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 658 CAGTTCTTGGTAACTATAAACATCCGAGAAAAGTCTCTTAATCTTCCGGAAAATCCATCA 717
Query 859 CCAGCTGGTGGTATTAGGAAACATCTCTCTGATCTTTCGCATGTGTTGAGGAAGCCCGAG 918
||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 718 CCAGCTGGT---ATTAGAAAACATCTCTCTGACCTTTCGCATGTGTTGAGGAAGCCCGAG 774
Query 919 ATTTCTTATTCGATAGCTTGGATCGCGGTATCAACCGCTGTGGTTCCGGTTTTGACAGGG 978
||||||| ||| ||||| ||||||||| ||||||||||||| ||||| ||| |||| |||
Sbjct 775 ATTTCTTTTTCCATAGCCTGGATCGCGTTATCAACCGCTGTAGTTCCTGTTCTGACTGGG 834
Query 979 ACTATGtttttttACCAAACAAAGTTTCTGAAGATTGATGCATCACTTTTAGGGATCTCC 1038
|| ||||| ||||||||||||||||||||||| || |||||||||||| |||||||||||
Sbjct 835 ACAATGTTCTTTTACCAAACAAAGTTTCTGAAAATCGATGCATCACTTCTAGGGATCTCC 894
Query 1039 AAGGTGTTTGGTCAAATTGCAATGCTTCTT-TGGGGTTTTGCATATAATCGTTGGCTAAA 1097
||||||||||||||||||||||||||| || |||||||||||||| ||||||||||| ||
Sbjct 895 AAGGTGTTTGGTCAAATTGCAATGCTT-TTATGGGGTTTTGCATACAATCGTTGGCTCAA 953
Query 1098 AGCTATGCGGCCGAGGAAACTGCTGACAGCCATTCAGGTGACGATAGCTTTCTTTGTGAT 1157
| || | | |||||||||| || ||||||| |||||||| || |||||||||||||||||
Sbjct 954 ATCTGTACAGCCGAGGAAATTGATGACAGCTATTCAGGTAACAATAGCTTTCTTTGTGAT 1013
Query 1158 ATCCGATCTCTTGTTTGTGAAAGGCGTGTACCGGGATTTGGGAGTGTCGGACTCTGTATA 1217
|||||||||||| ||||||| |||||| |||||||||||||||||||| |||||||||||
Sbjct 1014 ATCCGATCTCTTATTTGTGAGAGGCGTTTACCGGGATTTGGGAGTGTCAGACTCTGTATA 1073
Query 1218 TGTACTCTTCTTTTCTGGATTCTTGGAAACTCTATTTTACTTCAAGATTCTGCCGTTTAC 1277
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1074 CGTACTCTTCTTTTCTGGATTCTTGGAAACTCTCTTTTACTTCAAGATTCTGCCGTTCAC 1133
Query 1278 TGTCTTGATGGCTCGTCTCTGTCCTCCTGGATGTGAAGGGTCTCTCATGGCATTTGTCAT 1337
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 CGTCTTGATGGCCCGTCTCTGTCCTCCTGGATGTGAAGGGTCTCTCATGGCATTTGTCAT 1193
Query 1338 GTCAGCCATTGCTCTTGCATTCATAGTTAGCGGATATCTTGGAATCGTTCTTGCATCGTT 1397
|||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||| ||
Sbjct 1194 GTCAGCCATTGCACTTGCATTCATAGTTAGCGGATATCTTGGAATCATTCTCGCATCATT 1253
Query 1398 TGTCGGTGTAACAGAGGATGATTTCTCGGGGTTTACTCGCGGACTCGCTATAGAAGCGTG 1457
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1254 TGTCGGTGTAACAGTGGATGATTTCTCGGGGTTTACTCGTGGACTCGCTATAGAAGCGTT 1313
Query 1458 CTGCGTTGGGATTCCGTTGATCTTAACTTCTTGGATATATGATGAAGCGGAAACAAAAGA 1517
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||
Sbjct 1314 CTGCGTTGGGATTCCGTTGATCTTAACTTCGTGGATATATAATGAAGCGGAAACAAAGGA 1373
Query 1518 GAAGAGTAAAAAGATAGAGTGAGTTCATTTGGGTTAATGTGTACTTTGTATATCTTTGTG 1577
||| |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1374 GAAAAGTAAAAAGATAGAATGAGTTCATTCGGGTTAAAGTGTACTTTGTATATCTTTGTG 1433
Query 1578 ACATTCTTGTGATTTGA-GGTTTTTCGTAGTCTCTCTCATTG 1618
||||||||||| ||| | ||||| ||||||||||||| |||
Sbjct 1434 ACATTCTTGTGGTTTTAAGGTTT--CGTAGTCTCTCTCTTTG 1473
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66581748260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5