BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64900.1
Length=1770
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925338 jgi|Araly1|925338|scaffold_200899.1 2202 0.0
Ahg475495 jgi|Araly1|475495|fgenesh2_kg.2__625__AT1G64940.1 1443 0.0
Ahg496290 jgi|Araly1|496290|fgenesh2_kg.8__2106__AT5G61320.1 248 1e-64
> Ahg925338 jgi|Araly1|925338|scaffold_200899.1
Length=1564
Score = 2202 bits (1192), Expect = 0.0
Identities = 1419/1532 (93%), Gaps = 2/1532 (0%)
Strand=Plus/Plus
Query 55 AATAAAACCAAAGAATGGAGATATGGTTACTCATATTGGcctctctctccggatctctcc 114
|||| |||||||||||||||||||||||| |||| |||||||||||||||| ||||||||
Sbjct 7 AATAGAACCAAAGAATGGAGATATGGTTATTCATCTTGGCCTCTCTCTCCGTATCTCTCC 66
Query 115 ttctccatctcctcctccgccgccgtaactcctcctcccctccgttacctcctGACCCTA 174
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 67 TTCTCCATCTCCTCCTCCGCCGCCGTAACTCCTCCTCCCCTCCGCTACCTCCTGACCCCA 126
Query 175 ACTTCTTACCTTTCCTCGGAACCCTCCAGTGGCTCCGGGAAGGCTTAGGTGGCCTCGAAT 234
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 ACTTCTTACCTTTCCTTGGAACCCTCCAGTGGCTCCGGGAAGGCTTAGGTGGCCTCGAAT 186
Query 235 CCTATCTCCGCTCTGTCCACCACCGTCTAGGCCCCATCGTCACCCTCCGCATCACTTCCC 294
| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 187 CTTATCTCCGCTCCGTCCACCACCGTCTAGGCCCCATCGTTACCCTCCGCATCACTTCAC 246
Query 295 GCCCCGCCATATTCGTTGCCGATCGTTCCCTAACTCACGAGGCTCTCGTCCTGAACGGCG 354
||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 247 GCCCCGCCATATTTGTTGCCGACCGTTCCCTTACTCACGAGGCTCTCGTCCTGAACGGCG 306
Query 355 CCGTCTATGCGGACCGTCCACCACCTGCTGTAATTAGCAAGATAGTTGACGAACACAACA 414
|||||||||| |||||||||||||| | |||| | ||||||||||||||| |||||||||
Sbjct 307 CCGTCTATGCAGACCGTCCACCACCAGATGTAGTCAGCAAGATAGTTGACAAACACAACA 366
Query 415 TCAGCTCCGGGTCATACGGAGCCACGTGGCGGCTTCTCCGTCGAAACATCACCTCTGAGA 474
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 367 TCAGCTCAGGGTCATACGGAGCAACGTGGCGGCTTCTCCGTCGAAACATCACCTCTGAGA 426
Query 475 TTCTTCACCCCTCGCGCGTGAGATCTTACTCCCACGCTCGTCACTGGGTTCTTGAGATCC 534
|||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 427 TTCTTCACCCCTCGCGTGTGCGATCTTACTCCCACGCCCGTCACTGGGTTCTTGAGATCC 486
Query 535 TCTTTGAACGGTTCCGTAACCATGGAGGCGAAGAACCGATCGTCCTCATCCACCATCTCC 594
||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 487 TCTTTGACCGGTTCCGTAACCACGGAGGTGAAGAACCGATCGTCCTCATCCACCATCTCC 546
Query 595 ACTATGCAATGTTTGCGCTTCTTGTCCTTATGTGTTTTGGAGATAAGCTTGATGAGAAGC 654
|||||||||||||||||||||||||||| ||||||||||| || ||||| || |||||||
Sbjct 547 ACTATGCAATGTTTGCGCTTCTTGTCCTCATGTGTTTTGGGGACAAGCTCGACGAGAAGC 606
Query 655 AAATCAAAGAAGTGGAGTTCATTCAAAGACTACAGCTCCTTAGCTTGACCAAATTTAACA 714
|||||||| ||||||| |||||||| |||||||||||||| |||||| ||| ||||||||
Sbjct 607 AAATCAAACAAGTGGAATTCATTCAGAGACTACAGCTCCTCAGCTTGTCCAGATTTAACA 666
Query 715 TCTTCAACATCTGGCCTAAGTTCACCAAACTGATTCTGCGTAAGAGATGGCAAGAATTTC 774
|||||||||| |||||||||||||||||| ||||||| || |||||||||||||||||||
Sbjct 667 TCTTCAACATTTGGCCTAAGTTCACCAAATTGATTCTACGAAAGAGATGGCAAGAATTTC 726
Query 775 TCCAGATACGGAGACAGCAGCGGGATGTTTTGCTTCCCCTGATTCGTGCCCGGAGGAAGA 834
||||||| ||||||||||||||||| ||||||||||| |||||||||||||||| |||||
Sbjct 727 TCCAGATTCGGAGACAGCAGCGGGACGTTTTGCTTCCGCTGATTCGTGCCCGGATGAAGA 786
Query 835 TCGTTGAAGAGAGAAAGAGATCGGAGCAAGAAGACAAGAAAGACTATGTGCAATCATATG 894
|||| |||||||| ||||||| ||| |||||||||| ||||||||||||||||||||||
Sbjct 787 TCGTGGAAGAGAGGCAGAGATCCGAGGAAGAAGACAAAAAAGACTATGTGCAATCATATG 846
Query 895 TTGATACTCTACTCGATCTAGAGCTTCCAGAGGAAAATAGGAAGTTGAACGAGGAAGATA 954
|||||||||| |||||||||||||||||||| || || |||||| | |||||||| || |
Sbjct 847 TTGATACTCTTCTCGATCTAGAGCTTCCAGAAGAGAAGAGGAAGCTCAACGAGGACGACA 906
Query 955 TTATGAACTTGTGCTCGGAGTTTCTCACGGCCGGGACTGACACGACGGCCACGGCGCTGC 1014
| |||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||
Sbjct 907 TCATGAACTTGTGCTCGGAGTTTCTCACTGCCGGGACTGACACAACGGCCACCGCGCTGC 966
Query 1015 AATGGATCATGGCCAACCTAGTGAAATATCCAGAAATCCAGGAGAGATTACACGAGGAGA 1074
||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||
Sbjct 967 AATGGATCATGGCCAACCTCGTGAAATATCCAGAAATACAGGAGAGACTACACGAGGAGA 1026
Query 1075 TCAAGA-GCGTGGTTGGGGAAGAAGCAAAGGAGGTGGAGGAAGAAGATGTGGAGAAGATG 1133
||| || |||| || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1027 TCA-GAAGCGTAGTGGGGGAAGAAGCAAAGGAGGTGGAGGAAGAAGATGTGGAGAACATG 1085
Query 1134 CCGTATCTAAAGGCAGTGGTGTTAGAGGGACTCCGGAGACACCCTCCAGGACACTTTTTA 1193
|||||||||||||| |||||||| |||||||| ||| |||||||||| |||||||||||
Sbjct 1086 CCGTATCTAAAGGCTGTGGTGTTGGAGGGACTACGGCGACACCCTCCCGGACACTTTTTG 1145
Query 1194 CTCCCACACAGTGTCACGGAGGACACTGTGTTAGGAGGATACAAAGTACCGAAGAACGGG 1253
||||| || |||||||||||||| ||||| || ||||| ||||| ||||||||||| |||
Sbjct 1146 CTCCCGCATAGTGTCACGGAGGATACTGTATTGGGAGGGTACAAGGTACCGAAGAATGGG 1205
Query 1254 ACGATCAACTTCATGGTGGCGGAGATAGGGAGGGATCCAGTGGAGTGGGAAGAACCAATG 1313
||||||||||||||||| || || |||||||||||||||| |||||||||||||||||||
Sbjct 1206 ACGATCAACTTCATGGTTGCAGAAATAGGGAGGGATCCAGCGGAGTGGGAAGAACCAATG 1265
Query 1314 GCGTTTAAGCCAGAGAGGTTTATGGGAGAAGAAGAAGCGGTGGACCTCACCGGAAGTAGA 1373
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1266 GCGTTTAAGCCAGAGAGGTTTATGGGAGAAGACGAAGCGGTGGACCTAACCGGAAGTAGA 1325
Query 1374 GGGATAAAGATGATGCCGTTCGGAGCAGGAAGAAGGATATGTCCGGGCATAGGTCTAGCA 1433
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 1326 GGGATAAAGATGATGCCGTTCGGAGCAGGAAGGAGGATATGTCCGGGTATAGGGCTAGCT 1385
Query 1434 ATGTTGCATCTGGAGTACTACGTCGCCAACATGGTCAGAGAGTTCCAATGGAAAGAGGTC 1493
|||||||||| ||||||||| | ||||| ||||||||||||||||||||||||||||||
Sbjct 1386 CTGTTGCATCTCGAGTACTACATTGCCAATATGGTCAGAGAGTTCCAATGGAAAGAGGTC 1445
Query 1494 CAAGGTCATGAAGTGGACTTGACGGAGAAGCTCGAATTCACTGTCGTCATGAAGCATCCG 1553
||||| | ||||| ||||||||||||||||| || || || ||||||||||||||||||
Sbjct 1446 GAAGGTTACGAAGTTGACTTGACGGAGAAGCTTGAGTTTACCGTCGTCATGAAGCATCCG 1505
Query 1554 CTTAAGGCTCTTGCTGTTCCTAGGAGATGTCA 1585
||||||||| ||||||||| ||||||| ||||
Sbjct 1506 CTTAAGGCTTTTGCTGTTCATAGGAGAAGTCA 1537
> Ahg475495 jgi|Araly1|475495|fgenesh2_kg.2__625__AT1G64940.1
Length=1542
Score = 1443 bits (781), Expect = 0.0
Identities = 1302/1552 (84%), Gaps = 41/1552 (3%)
Strand=Plus/Plus
Query 69 ATGGAGATATGGTTACTCATATTGGcctctctc-tccggatctctccttctccatctcct 127
||||||||||||||||| || |||| ||||||| ||| |||||||||||| |||||||
Sbjct 1 ATGGAGATATGGTTACTTATCTTGGGCTCTCTCTTCC-TCTCTCTCCTTCTCAATCTCCT 59
Query 128 cctc---cgccgccgtaactcctcctcc-c-c-tccgttacctcctGACCCTAACTTCTT 181
|||| ||||||||| ||||||||||| | | |||||||||||||||||||||||||||
Sbjct 60 CCTCTTTCGCCGCCGTGACTCCTCCTCCTCTCTTCCGTTACCTCCTGACCCTAACTTCTT 119
Query 182 ACCTTTCCTCGGAACCCTCCAGTGGCTCCGGGAAGGCTTAGGTGGCCTCGAATC--CTAT 239
|||||||| ||||||||||| ||||||||| |||| |||||||| ||| || | ||||
Sbjct 120 CCCTTTCCTTGGAACCCTCCAATGGCTCCGGCAAGGTTTAGGTGGTCTC-AA-CAACTAT 177
Query 240 CTCCGCTCTGTCCACCACCGTCTAGGCCCCATCGTCACCCTCCGCATCACTTCCCGCCCC 299
|||||| | |||||||||||||| || |||||| |||||||||| |||||||||||||||
Sbjct 178 CTCCGCACCGTCCACCACCGTCTCGGTCCCATCATCACCCTCCGTATCACTTCCCGCCCC 237
Query 300 GCCATATTCGTTGCCGATCGTTCCCTAACTCA-CGAGGCTCTCGTCCTGAACGGCGCCGT 358
|| || ||||| |||||||||||||| || | | ||||||| ||| ||||||| |||||
Sbjct 238 GCAATCTTCGTGGCCGATCGTTCCCTTGCTTATC-AGGCTCTAGTCTTGAACGGTGCCGT 296
Query 359 CTAT-GCGGACCGTCCACCACCTGCTGTAATTAGCAAGATAG-TT---G--ACGAACACA 411
| | || || |||||||| | ||| || || ||||| | || | || |||| |
Sbjct 297 -TTTCGCCGATCGTCCACCGGCGGCTCCGATCAGTAAGATTGTTTCGAGTAACCAACATA 355
Query 412 ACATCAGCTCCGGGTCATACGGAGCCACGTGGCGGCTTCTCCGTC-GAAACATCACCTCT 470
|||||||||| ||||||||||| |||||||||||||| || | ||| | |||| |||
Sbjct 356 ACATCAGCTCTTCATCATACGGAGCTACGTGGCGGCTTCTTCGCCGGAATC-TCACTTCT 414
Query 471 GAGATTCTTCACCCCTCGCGCGTGAGATCTTACTCCCACGCTCGTCACTGGGTTCTTGAG 530
|||||||||||||| || || |||| |||||| || ||||| || |||||||||| |
Sbjct 415 GAGATTCTTCACCCGTCACGGGTGAAATCTTATTCTCACGCGCGGGGTTGGGTTCTTGGG 474
Query 531 ATCCTCTTTGAACGGTTCCGTAACCATGGAGGCGAAGAACCGATCGTCCTCATCCACCAT 590
|| |||||||| || || ||||| | || || ||||||||||| || | | | |||
Sbjct 475 ATACTCTTTGATCGTTTTCGTAAGAACGGCGGTGAAGAACCGATTGTTGTGGTTGATCAT 534
Query 591 CTCCACTATGCAATGTTTGCGCTTCTTGTCCTTATGTGTTTTGGAGATAAGCTTGATGAG 650
|| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 535 CTTCACTATGCAATGTTTGCGCTTCTTGTTCTCATGTGTTTTGGAGATAAGCTTGATGAG 594
Query 651 AAGCAAATCAAAGAAGTGGAGT-TCATTCAAAGACTACAGCTCCTTAGCTTGACCAAATT 709
|||||||||||| | ||| | | | |||| |||| |||||| ||| |||| ||| |||
Sbjct 595 AAGCAAATCAAACAGGTGCAATAT-GTTCAGAGACGACAGCTTCTTCGCTTTTCCAGATT 653
Query 710 TAACATCTTCAA-CATCTGGCCTAAGTTCACCAAACTGATTCTGCGTAAGAGATGGCAAG 768
||||||| |||| | | ||||||||||| || ||| ||||| |||| ||||||||| |||
Sbjct 654 TAACATCCTCAATC-TTTGGCCTAAGTTTACTAAATTGATTTTGCGAAAGAGATGGGAAG 712
Query 769 AATTTCTCCAGATACGGAGACAGCAGCGGGATGTTTTGCTTCCCCTGATTCGTGCCCGGA 828
| ||| ||||||| |||||| |||||| |||||||||||||| ||||||||||| ||||
Sbjct 713 AGTTTTTCCAGATGCGGAGAGAGCAGCATGATGTTTTGCTTCCGCTGATTCGTGCTCGGA 772
Query 829 GGAAGATCGTTG-A-AGA-G-AGAA-AGA-GATCGGAGCA---AGAAGACAAGAAAGACT 879
| ||||| || | | ||| | |||| ||| ||||||| | ||||| ||| ||||| |
Sbjct 773 GAAAGATTGTCGAAGAGAGGAAGAATAGATCATCGGAGGAGGCAGAAGTCAACAAAGAGT 832
Query 880 ATGTGCAATCATATGTTGATACTCTACTCGATCTAGAGCTTCCAGAGGAAAATAGGAAGT 939
|||| |||||||| ||||||||| | |||||||| ||||||||||| || || ||||||
Sbjct 833 ATGTACAATCATACGTTGATACTTTGCTCGATCTGGAGCTTCCAGATGAGAAGAGGAAGC 892
Query 940 TGAACGAGGAAGATATTATGAACTTGTGCTCGGAGTTTCTC-ACGGCCGGGACTGACACG 998
||| |||||| || ||| ||| || ||||| ||||||||| |||| |||||||| ||
Sbjct 893 TGACCGAGGATGAGATTGTGAGTTTATGCTCTGAGTTTCTCAACGG-TGGGACTGATACA 951
Query 999 ACGGCCACGGCGCTGCAATGGATCATGGCCAACCTAGTGAAATATCCAGAAATCCAGGA- 1057
|||||||| ||| |||||||||||||||| ||||| |||||| | || || || || ||
Sbjct 952 ACGGCCACCGCGTTGCAATGGATCATGGCGAACCTTGTGAAAAACCCGGAGATTCA-GAG 1010
Query 1058 GAGATTACACGAGGAGATCAAGAGCGTGGTTGGGGAAGAAGCAAAGGAGGTGGAGGAAGA 1117
||| ||| ||||||||||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct 1011 GAGGTTATACGAGGAGATCAAAAGCGTAGTTGGGGAAGAAGCAAAGGAAGTGGAGGAAGA 1070
Query 1118 AGATGTGGAGAAGATGCCGTATCTAAAGGCAGTGGTGTTAGAGGGACTCCGGAGACACCC 1177
||| | | | ||||||||||||||||||||||||||| | ||||| || ||||| || ||
Sbjct 1071 AGACGCGCAAAAGATGCCGTATCTAAAGGCAGTGGTGATGGAGGGTCTTCGGAGGCATCC 1130
Query 1178 TCCAGGACACTTTTTACTCCCACACAGTGTCACGGAGGACACTGTGTTAGGAGGATACAA 1237
||| ||||||||| | ||||| || |||||||||||||||||||| || |||||||||||
Sbjct 1131 TCCGGGACACTTTGTGCTCCCGCATAGTGTCACGGAGGACACTGTATTGGGAGGATACAA 1190
Query 1238 AGTACCGAAGAACGGGACGATCAACTTCATGGTGGCGGAGATAGGGAGGGATCCAGTGGA 1297
|||||||||||| |||||||| |||||||||||||| |||||||||||||||||| ||
Sbjct 1191 AGTACCGAAGAAGGGGACGATTAACTTCATGGTGGCAGAGATAGGGAGGGATCCAAAGGT 1250
Query 1298 GTGGGAAGAACCAATGGCGTTTAAGCCAGAGAGGTTTATGGGAGAAGAAGAAGCGGTGGA 1357
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1251 GTGGGAGGAACCAATGGCGTTTAAGCCAGAGAGGTTTATGGGAGAAGAAGAACCGGTGGA 1310
Query 1358 CCTCACCGGAAGTAGAGGGATAAAGATGATGCCGTTCGGAGCAGGAAGAAGGATATGTCC 1417
| | || ||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1311 CATAACAGGAAGTAGAGGGATAAAAATGATGCCGTTCGGAGCGGGAAGAAGGATATGTCC 1370
Query 1418 GGGCATAGGTCTAGCAATGTTGCATCTGGAGTACTACGTCGCCAACATGGTCAGAGAGTT 1477
||| || || ||||| ||| ||||||| |||||||| || || || ||||| || |||||
Sbjct 1371 GGGGATTGGGCTAGCGATGCTGCATCTCGAGTACTATGTGGCGAATATGGTGAGGGAGTT 1430
Query 1478 CCAATGGAAAGAGGTCCAAGGTCATGAAGTGGACTTGACGGAGAAGCTCGAATTCACTGT 1537
| ||||| |||||| ||||||||||||| |||||||| ||||||||||| |||||
Sbjct 1431 TGAGTGGAAGGAGGTCGAAGGTCATGAAGTTGACTTGACTGAGAAGCTCGAGTTCACCAC 1490
Query 1538 CGTCATGAAGCATCCGCTTAAGGCTCTTGCTGTTCCTAGGAGATGTCACTAG 1589
||||||||| ||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1491 CGTCATGAAACATCCTCTTAAGGCTCTTGCTGTTCCTAGGAGAAGTCACTAG 1542
> Ahg496290 jgi|Araly1|496290|fgenesh2_kg.8__2106__AT5G61320.1
Length=1392
Score = 248 bits (134), Expect = 1e-64
Identities = 250/306 (82%), Gaps = 8/306 (3%)
Strand=Plus/Plus
Query 1269 GTGGCGGA-GATAGGGAGGGATCCAGTGGAGTGGGAAGAACCAATGGCGTTTAAGCCAGA 1327
||||| || ||||||||| |||||| || |||||| || ||||||| ||||||||| ||
Sbjct 1051 GTGGC-GATGATAGGGAGAGATCCAACGGTGTGGGAGGAGCCAATGGAGTTTAAGCCGGA 1109
Query 1328 GAGGTTTATGGGAGAAGAAGAAGCGGTGGACCTCACCGGAAGTAGAGGGATAAAGATGAT 1387
||| || || ||||||||||||| ||||| | || |||||||||||||||||||||||
Sbjct 1110 GAGATTCATCGGAGAAGAAGAAGAAGTGGATGTTACTGGAAGTAGAGGGATAAAGATGAT 1169
Query 1388 GCCGTTCGGAGCAGGAAGAAGGATATGTCC-GGGCATAGG-TCTAGCAATGTTGCATCTG 1445
|||||||||||||||||| ||||| ||||| ||| ||||| | | || ||||||||| ||
Sbjct 1170 GCCGTTCGGAGCAGGAAGGAGGATTTGTCCAGGG-ATAGGAT-TGGCTATGTTGCATTTG 1227
Query 1446 GAGTACTACGTCGCCAACATGGTCAGAGAGTTCCAATGGAAAGAGGTCCAAGGTCATGAA 1505
||||| | || | || |||| | |||||| |||||||||| || ||||| |||||
Sbjct 1228 GAGTATTTTGTGGTGAATTTGGTGAAAGAGTTTGAATGGAAAGAAGTTGAAGGTGATGAA 1287
Query 1506 GTGGACTTGACGGAGAAGCTCGAA-TTCACTGTCGTCATGAAGCATCCGCTTAAGGCTCT 1564
|| |||||| | ||||| | | | |||||||| ||||||||| |||| ||||||||||
Sbjct 1288 GTTGACTTGTCTGAGAAA-TGGGAGTTCACTGTTGTCATGAAGTATCCTCTTAAGGCTCG 1346
Query 1565 TGCTGT 1570
||||||
Sbjct 1347 TGCTGT 1352
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66429387280
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5