BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64910.1
Length=1611
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475492 jgi|Araly1|475492|fgenesh2_kg.2__622__AT1G64910.1 2115 0.0
Ahg907745 jgi|Araly1|907745|Al_scaffold_0002_826 1358 0.0
Ahg950022 jgi|Araly1|950022|scaffold_801909.1 1247 0.0
> Ahg475492 jgi|Araly1|475492|fgenesh2_kg.2__622__AT1G64910.1
Length=1459
Score = 2115 bits (1145), Expect = 0.0
Identities = 1309/1388 (94%), Gaps = 11/1388 (1%)
Strand=Plus/Plus
Query 68 TTGGGAACGAAAAATGGGCCAAACGTTTCACGCCTTTATGTTCCCATGGTTCGCTTTTGG 127
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 48 TTGGGAACGAAAAATGGGCCAAAAGTTTCACGCCTTTATGTTCCCTTGGTTCGCTTTTGG 107
Query 128 TCATATGACTCCATACTTGCATTTAGCCAACAAGTTAGCTGAGAGAGGTCACAGAATCAC 187
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 108 TCATATGACTCCATACTTGCATTTAGCCAACAAGTTAGCTGAGAAAGGTCACAGAGTCAC 167
Query 188 TTTCTTGATCCCCAAGAAAGCTCAGAAGCAGCTTGAACATCTCAATCTGTTTCCAGACAG 247
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 TTTCTTGCTCCCCAAGAAAGCTCAGAAGCAGCTTGAACATCTCAATCTGTTTCCAGACAG 227
Query 248 CATCGTCTTTCACTCTCTTACTATTCCTCATGTTGATGGTCTCCCCGCTGGAGCCGAGAC 307
||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 228 CATCGTCTTTCACCCTCTTACTATGCCTCATGTTGATGGTCTCCCGGCTGGAGCCGAGAC 287
Query 308 TTTCTCGGATATCCCTATGCCATTGTGGAAGTTCTTGCCCCCAGCTATAGATCTCACACG 367
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 288 TTTCTCGGATATCCCTATGCCGTTGTGGAAGTTCTTGCCCCCAGCTATAGATCTCACACG 347
Query 368 CGATCAAGTTGAAGCAGCGGTT-AGTGCCTTGAGTCCGGACCTGATCTTGTTCGATATTG 426
|||||| || ||||| |||||| | ||||||||| ||||||||||| ||||||||| |||
Sbjct 348 CGATCAGGTAGAAGCCGCGGTTCA-TGCCTTGAGACCGGACCTGATATTGTTCGATCTTG 406
Query 427 CTTCATGGGTTCCAGAAGTGGCTAAAGAGTATAGAGTCAAGAGTATGTTGTACAACATCA 486
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 CTTCATGGGTTCCAGAAATGGCTAAAGAGTATAGAGTCAAGAGTATGTTGTACAACATCA 466
Query 487 TATCAGCTACTTCTATAGCTCATGACTTTGTCCCAGGTGGTGAACTTGGAGTTCCTCCAC 546
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 467 TATCAGCTACATCTATAGCTCATGACTTTGTCCCAGGTGGTGAACTAGGAGTTCCTCCAC 526
Query 547 CTGGTTATCCTTCCTCAAAGTTGTTGTACCGCAAACACGATGCTCACGCCTTGTTGTCCT 606
|||||||||| || ||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 527 CTGGTTATCCATCATCAAAGTTGTTGTACCGCAGACACGATGCTCACGCCTTGTTGACCT 586
Query 607 TCTCCGTCTACTACAAGAGGTTTTCTCATCGGCTCATCACAGGTCTTATGAATTGTGATT 666
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 587 TCTCCGTCTACTACAAGAGGTTTTCTCAGAGGCTCATCACAGGTCTTATGAATTGTGATT 646
Query 667 TCATTTCGATAAGGACATGCAAAGAAATCGAGGGTAAATTCTGCGAGTATCTTGAGCGTC 726
||||||| || ||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 647 TCATTTCAATCCGGACATGTAAAGAAATCGAGGGTAAATTCTGCGAGTATATTGAGCGTC 706
Query 727 AATACCATAAAAAGGTTTTCTTGACGGGTCCAATGCTTCCTGAGCCA-AACAAAGGTAAA 785
||||||||||||||||||||||||| |||||||||||||||| || | || |||| ||||
Sbjct 707 AATACCATAAAAAGGTTTTCTTGACAGGTCCAATGCTTCCTGTGCTAGAAAAAAG-TAAA 765
Query 786 CCACTGGAAGATCGATGGAGTCATTGGCTGAACGGGTTTGAACAAGGCT-CTGTAGTGTT 844
||||| |||||||||||||||||||||||||||||||||| |||||||| | ||||||||
Sbjct 766 CCACTTGAAGATCGATGGAGTCATTGGCTGAACGGGTTTGGACAAGGCTAC-GTAGTGTT 824
Query 845 CTGTGCATTGGGAAGTCAAGTCACTCTAGAGAAGGACCAGTTCCAAGAACTTTGTTTAGG 904
||||||||||||||||||| || |||||||||| ||||| ||||||||||||||||||||
Sbjct 825 CTGTGCATTGGGAAGTCAAATCTCTCTAGAGAAAGACCAATTCCAAGAACTTTGTTTAGG 884
Query 905 AATAGAGCTTACAGGTTTACCGTTTTTTGTAGCTGTAACACCACCAAAAGGCGCAAAGAC 964
|||||| |||||||||||||||||| ||||||| ||||| ||||||||||||||||||||
Sbjct 885 AATAGAACTTACAGGTTTACCGTTTCTTGTAGCGGTAACTCCACCAAAAGGCGCAAAGAC 944
Query 965 GATTCAAGATGCGTTACCAGAAGGGTTCGAGGAGAGGGTGAAAGATCGTGGAGTGGTTTT 1024
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 945 GATTCAAGAAGCGTTACCAGAAGGGTTCGAGGAGAGGGTAAAAGATCGTGGAGTGGTTTG 1004
Query 1025 GGGAGAATGGGTGCAACAACCGTTATTATTGGCTCATCCATCAGTAGGCTGCTTCT-TGA 1083
||||||||||||||||||||| ||| ||||||||||||||||||||||||| || | |||
Sbjct 1005 GGGAGAATGGGTGCAACAACCATTAATATTGGCTCATCCATCAGTAGGCTGTTT-TGTGA 1063
Query 1084 GTCATTGCGGATTCGGGTCAATGTGGGAATCTATAATGAGTGATTGCCAAATAGTTTTGC 1143
| |||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||
Sbjct 1064 GCCATTGCGGATTCGGGTCAATGTGGGAATCTCTAATGGGTGATTGCCAAATAGTCTTGC 1123
Query 1144 TTCCATTTTTGGCTGATCAAGTTCTCAACACAAGATTGATGACCGAAGAACTCAAGGTTT 1203
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1124 TTCCATTTTTGGCTGATCAAGTTCTCAACACAAGATTGATGACCGAAGAACTCGAGGTTT 1183
Query 1204 CGGTTGAAGTGCAAAGAGAAGAAACAGGATGGTTCTCGAAGGAGAGCTTGAGTGTTGCTA 1263
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1184 CGGTTGAAGTGCAAAGAGAAGAAACAGGATGGTTCTCGAAGGAGAGCTTGAGTGTTGCGA 1243
Query 1264 TCACATCTGTGATGGACCAAGCTAGTGAGATCGGGAATCTGGTGAGAAGGAACCATTCCA 1323
||||||||||||||||||||| ||| |||||||||||||||||||| |||||||| ||||
Sbjct 1244 TCACATCTGTGATGGACCAAGGTAGCGAGATCGGGAATCTGGTGAGGAGGAACCACTCCA 1303
Query 1324 AATTGAAGGAGGTTTTGGTTAGTGATGGATTATTAACCGGTTACACCGATAAATTTGTTG 1383
|||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1304 AATTGAAGGAGGTTTTTGTTAGTGATGGATTATTGACCGGTTATACCGATAAATTTGTTG 1363
Query 1384 ACACTTTGGAGAATCTTGTCAGCGAGACAAAGCGTGAATGAAATACTACAAT---AAAGA 1440
|||| ||||||||||| |||||||| ||||| | |||||||||||||||| | |||||
Sbjct 1364 ACACATTGGAGAATCTAGTCAGCGATACAAATCTTGAATGAAATACTACACTTGCAAAGA 1423
Query 1441 AGTACGTA 1448
||||||||
Sbjct 1424 AGTACGTA 1431
> Ahg907745 jgi|Araly1|907745|Al_scaffold_0002_826
Length=1356
Score = 1358 bits (735), Expect = 0.0
Identities = 1166/1371 (85%), Gaps = 42/1371 (3%)
Strand=Plus/Plus
Query 81 ATGGGCCAAACGTTTCACGCCTTTATGTTCCCATGGTTCGCTTTTGGTCATATGACTCCA 140
|||||||||| | |||| || ||||||||||| ||||| ||||||||||||||||||||
Sbjct 1 ATGGGCCAAAAGATTCATGCTTTTATGTTCCCGTGGTTTGCTTTTGGTCATATGACTCCG 60
Query 141 TACTTGCATTTAGCCAACAAGTTA-GC-TGAGAGAGGTCACAGAATCACTTTCTTGATCC 198
||||||||| |||||||| || || | ||| |||||| || | ||||||||| | |
Sbjct 61 TACTTGCATCTAGCCAAC-AG-TACACAACAGAAAGGTCATAGGGTTACTTTCTTGCTAC 118
Query 199 CCAAGAAAGCTCAGAAGCAGCTT-GAACATCTCAATCTGTTTCCAGACAGCATCGTCTTT 257
| |||||||||||||| || || | ||||| |||||||| ||| | | || ||||||
Sbjct 119 CTAAGAAAGCTCAGAAACA-ATTGGGACATCAGAATCTGTTCCCACATGGTATTGTCTTT 177
Query 258 CACT-CTCTTACTATTCCTCATGTTGATGGTCTCCCCGCTGGAGCCGAGACTTTCTCGGA 316
|| | |||||||||| |||||||||||||| ||||| ||||| |||||||| ||||||
Sbjct 178 CA-TCCTCTTACTATACCTCATGTTGATGGCCTCCCTGCTGGTGCCGAGACAGCCTCGGA 236
Query 317 TATCCCTATGC-CATT-GTGGAAGTTCTTGCCCCCAGCTATAGATCTCACACGCGATCAA 374
|||||| || | | || || |||||| ||| | ||| || ||||| |||||||||||
Sbjct 237 TATCCCCAT-CTCTTTGGT-GAAGTTTTTGTCTATAGCCATGGATCTTACACGCGATCAG 294
Query 375 GTTGAAGCAGCGGTTAGTGCCTTGAGTCCGGACCTGATCTTGTTCGATATT-GCTTC-AT 432
|||||||| ||| || ||||||||| || |||||||||||||||||| || || || ||
Sbjct 295 GTTGAAGCCGCGATTCTTGCCTTGAGACCAGACCTGATCTTGTTCGAT-TTAGC-TCAAT 352
Query 433 GGGTTCCAGAAGTGGCTAAAGAGT-ATAGAGTCAAGAGTATGTTGTACAACATCATATCA 491
|| |||||||| ||||||||| | ||| |||||||||||||||||||||| | || |||
Sbjct 353 GGATTCCAGAAATGGCTAAAG-CTCATAAAGTCAAGAGTATGTTGTACAACGTGATGTCA 411
Query 492 GCTACTTCTATAGCTCATGACTTTGTCCCAGGTGGTGAACTTGGAGTTCCTCCACCTGGT 551
||||| || || ||||| ||| |||||||||| |||||||| ||||||||||||||||||
Sbjct 412 GCTACCTCCATTGCTCACGACCTTGTCCCAGGAGGTGAACTAGGAGTTCCTCCACCTGGT 471
Query 552 TATCCTTCCTCAAAGTTGTTGTACCGCAAACACGATGCTCACGCCTTGTTGTCCTTCTCC 611
|||||||| |||||| |||||||| |||||||||||||||||| ||| || ||||||||
Sbjct 472 TATCCTTCATCAAAGGCGTTGTACCACAAACACGATGCTCACGCATTGCTGACCTTCTCC 531
Query 612 GTCTACTACAAGAGGTTTTCTCATCGGCTCATCACAGGTCTTATGAATTGTGATTTCATT 671
| || |||||||||||||| ||||||||||| |||||||||||||||||| |||||||||
Sbjct 532 GGCTTCTACAAGAGGTTTTATCATCGGCTCACCACAGGTCTTATGAATTGCGATTTCATT 591
Query 672 TCGATAAGGACATGCAAAGAAATCGAGGGTAAATTCTGCGAGTATCTTGAGCGTCAATAC 731
||||| |||||||||||||||||||| ||||||||||| || ||| | ||||||||||||
Sbjct 592 TCGATTAGGACATGCAAAGAAATCGAAGGTAAATTCTGTGACTATATCGAGCGTCAATAC 651
Query 732 CATAAAAAGGTTTTCTTGACGGGTCCAATGCTTCCTGAGCCAAACAAAG-GTAAACCACT 790
| || |||||| |||| || ||||||||||||||||||||| || ||| ||||||||||
Sbjct 652 GAGAAGAAGGTTCTCTTAACCGGTCCAATGCTTCCTGAGCCAGAC-AAGAGTAAACCACT 710
Query 791 GGAAGATCGATGGAGTCATTGGCTGAACGGGTTTGA-ACAAGGCTCTGTAGTGTTCTGTG 849
||||||| ||||||||| ||||||| |||||| | ||||||||||||| |||||||||
Sbjct 711 TGAAGATCAATGGAGTCACTGGCTGAGTGGGTTT-AGACAAGGCTCTGTACTGTTCTGTG 769
Query 850 CATTGGGAAGTCAAGTCACTCTAGAGAAGGACCAGTTCCAAGAACTTTGTTTAGGAATAG 909
|||||||||| ||| |||||||||||| |||| ||||||||||| |||||||||||||
Sbjct 770 CATTGGGAAGCCAAACCACTCTAGAGAAAAACCAATTCCAAGAACTCTGTTTAGGAATAG 829
Query 910 AGCTTACAGGTTTACCGTTTTTTGTAGCTGTAACA-CCACCAAAAGGCGCAAAGACGATT 968
|||||||||||||||||||| |||| || |||| | |||||||||||| ||||||| |||
Sbjct 830 AGCTTACAGGTTTACCGTTTCTTGTCGCGGTAA-AGCCACCAAAAGGCACAAAGACAATT 888
Query 969 CAAGATGCGTTACCAGAAGGGTTCGAGGAGAGGGTGAAAGATCGTGGAGTGGTTTTGGGA 1028
||||| ||||||||||||||||||||||| ||||||| | ||||||| |||||| ||||
Sbjct 889 CAAGAAGCGTTACCAGAAGGGTTCGAGGAAAGGGTGACCGGTCGTGGAATGGTTTGGGGA 948
Query 1029 GAATGGGTGCAACAACCGT--T---A----TT-AT-T-GGCTCATCCATCAGTAGGCTGC 1076
||||||||||||||||| | | | || || | ||||||||||||||||||||||
Sbjct 949 GAATGGGTGCAACAACCATACTGGCAACCATTGATATTGGCTCATCCATCAGTAGGCTGC 1008
Query 1077 TTCT-TGAGTCATTGCGGATTCGGGTCAATGTGGGAATCTATAATGAGTGATTGCCAAAT 1135
|| | |||| || ||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1009 TT-TGTGAGCCACTGCGGATTCGGGTCAATGTGGGAATCTCTAATGAGTGATTGTCAAAT 1067
Query 1136 AGT-TTTGCTTCCATTTTTGGCTGATCAAGTTCTCAACACAAGATTGAT-GACCGAAGAA 1193
||| ||| ||||| ||||| |||||||||||||| ||| ||||| || ||| ||||||
Sbjct 1068 AGTCTTTA-TTCCAGTTTTGAATGATCAAGTTCTCACCACTAGATT-ATTGACTGAAGAA 1125
Query 1194 CTCAAGGTTTCGGTTGAAGTGCAAAGAGAAGAAACAGGATGGTTCTCGAAGGAGAGCTTG 1253
||| |||| || ||||| || |||||||||||||||||||||||||| || || | ||||
Sbjct 1126 CTCGAGGTCTCCGTTGAGGTACAAAGAGAAGAAACAGGATGGTTCTCAAAAGAAAACTTG 1185
Query 1254 AGTGTTGCTATCACATCTGTGATGGACCAAGCTAGTGAGATCGGGAATCTGGTGAGAAGG 1313
|||| ||| |||| ||| |||||||| ||| ||| ||||| ||||| | |||||||||
Sbjct 1186 AGTGGTGCAATCATGTCTTTGATGGACAAAGATAGCGAGATAGGGAACCAAGTGAGAAGG 1245
Query 1314 AACCATTCCAAATTGAAGGAGGTTTTGGTTAGTGATGGATTATTAACCGGTTACACCGAT 1373
|||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||
Sbjct 1246 AACCATTCCAAATTGAAGGAAACTTTGGGTAGTCCTGGATTATTAACCGGTTACACCGAT 1305
Query 1374 AAATTTGTTGACACTTTGGAGAATCTTGTCAGCGAGACAAAGCGTGAATGA 1424
|| |||||||||||||||| |||||| |||| ||||||||| | |||||||
Sbjct 1306 AAGTTTGTTGACACTTTGGCGAATCTAGTCAACGAGACAAATCTTGAATGA 1356
> Ahg950022 jgi|Araly1|950022|scaffold_801909.1
Length=1384
Score = 1247 bits (675), Expect = 0.0
Identities = 1161/1390 (84%), Gaps = 55/1390 (4%)
Strand=Plus/Plus
Query 64 AATATTGGGAACGAAAAATGGGCCAAACGTTTCACGCCTTTATGTTCCCATGGTTCGCTT 123
||| || |||| ||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 5 AAT-TTAGGAAAGAAAAATGGGCCAAAAGTTTCACGCTTTTATGTTCCCATGGTTCGCTT 63
Query 124 TTGGTCATATGACTCCATACTTGCATTTAGCCAACAAGTTAGCTGAGAGAGGTCACAGAA 183
||||||||||||||| ||||||||| ||||||||||| ||||||||| |||||| ||
Sbjct 64 ATGGTCATATGACTCCGTACTTGCATCTAGCCAACAAGCTAGCTGAGAAAGGTCATAGGG 123
Query 184 TCACTTTCTTGATCCCCAAGAAAGCTCAGAAGCAGCTT-GAACATCTCAATCTGTTTCCA 242
| ||||||||| | || ||||||||||| || ||| || ||||||| |||||||||||||
Sbjct 124 TTACTTTCTTGCTGCCTAAGAAAGCTCAAAAACAG-TTGGAACATCACAATCTGTTTCCA 182
Query 243 GACAGCATCGTCTTTCACT-CTCTTACTATTCCTCATGTTGATGGTCTCCCCGCTGGAGC 301
||||||||||||||| | | ||||||||||||||||||||||||||||||| | ||| ||
Sbjct 183 GACAGCATCGTCTTTTA-TCCTCTTACTATTCCTCATGTTGATGGTCTCCCTGATGGCGC 241
Query 302 CGAGACTTTCTCGGATATCCCTATGC-CATTGTGGAAGTT-CTTGCCCCCAGCTATAGAT 359
|||||| |||||||||||| || | | ||| ||||||| || | || |||| || |||
Sbjct 242 CGAGACCGCCTCGGATATCCCCAT-CTCGTTGGGGAAGTTTCT-GACCGCAGCCATGGAT 299
Query 360 CTCACACGCGATCAAGTTGAAGCAGCGGTTAGTGCCTTGAGTCCGGACCTGATCTTGTTC 419
|||||||||||||| || ||||| |||||| |||| || | || |||||||| || ||
Sbjct 300 CTCACACGCGATCAGGTCGAAGCCGCGGTTCGTGCTTTAAAACCAGACCTGATATTTTTT 359
Query 420 GATATTGCTTCAT-GGGTTCCAGAAGTGGCTAAAGAGTATAGA-GTCAAGAGTATGTTGT 477
||| |||||| || ||||||| ||| |||| | ||| ||| | ||||||||| || | |
Sbjct 360 GATTTTGCTT-ATTGGGTTCCGGAAATGGCGAGAGAACATA-ACGTCAAGAGTGTGCTCT 417
Query 478 ACAACATCATATCAGCTA-CTTCTATAGCTCATGA-CTTTGTCCCAGGTGGTGAACTT-G 534
|| | |||| |||| || | ||||||||||| ||| ||||||||||||||| || |
Sbjct 418 ACTTTGTGGTATCGGCTAACTCC-ATAGCTCATGAACTT-GTCCCAGGTGGTGAA-TTAG 474
Query 535 GAGTTCCTCCACCTGGTTATCCTTCCTCAAA-GTTGTTGTACCGCAAACACGATGCTCAC 593
||||||||||||||||||||||||| |||| || ||||||||| |||||||||||||
Sbjct 475 GAGTTCCTCCACCTGGTTATCCTTCGACAAAAGT-GTTGTACCGTGGACACGATGCTCAC 533
Query 594 GCCTTGTTGTCCTTCT-CCGTCTACTACAAGAGGTTTTC-TCATCGGCTCATCA-CAGGT 650
|| |||||| | || | || ||| |||| ||||| || | | | ||| | | || |||||
Sbjct 534 GCTTTGTTGACTTT-TGCCATCTTCTACGAGAGGCTT-CATTACCGGATAA-CAACAGGT 590
Query 651 CTTATGAATTGTGATTTCATTTCGATAAGGACATGCAAAGAAATCGAGGGTAAATTCTGC 710
|| | |||||||||||| || || || ||||| || |||||| | || ||||||||||||
Sbjct 591 CTAAAGAATTGTGATTTTATCTCAATTAGGACTTGTAAAGAAGTTGAAGGTAAATTCTGC 650
Query 711 GAGTATCTTGAGC-GTCAATACCATAAAAAGGTT-TTCTTGACGGGTCCAATGCTTCCTG 768
|| ||| | ||| | |||||||| | |||||| || ||||| |||||||||||||| |
Sbjct 651 GACTATATCGAGAAG-CAATACCAGAGGAAGGTTCTT-TTGACAGGTCCAATGCTTCCAG 708
Query 769 AGCCAAACAA-AGGTAAACCACTGGAAGATCGATGG-AGTCATTGGCTGAA-CGGGTTT- 824
||||| |||| || || |||||| |||||||||||| | ||||||||| || | |||
Sbjct 709 AGCCAGACAACAG-TAGACCACTTGAAGATCGATGGGA-TCATTGGCTAAATCA--TTTC 764
Query 825 GAACAAGGCTCTGTAGTGT-TCTGTGCATTGGGAAGTCAAGTCACTCTAGAGAAGGACCA 883
|||| || || ||| | | | |||||||||||||||||| ||||| |||||||||| ||
Sbjct 765 GAACCCGGTTCGGTAATATAT-TGTGCATTGGGAAGTCAAATCACTTTAGAGAAGGATCA 823
Query 884 GTTCCAAGAACTTTGTTTAGGAATAGAGCTTACAGGTTTACCGTTTTTTGTAGCTGTAAC 943
||||||||||| ||||||||||| ||||| || |||||||||||| ||||||| ||||
Sbjct 824 ATTCCAAGAACTCTGTTTAGGAATGGAGCTCACTGGTTTACCGTTTCTTGTAGCGGTAA- 882
Query 944 A-CCACCAAAAGGCGCAAAGACGATTCAAGATGCGTTACCAGAAGGGTTCGAGGAGAGGG 1002
| ||||||||||||||||||||||| ||||| ||||| ||||||||||| | ||||||||
Sbjct 883 AGCCACCAAAAGGCGCAAAGACGATCCAAGAAGCGTTGCCAGAAGGGTTTGCGGAGAGGG 942
Query 1003 TGAAAGA-TCGTGGAGTGGTTTTGGGAGAATGGGTGCAACAACCGTT-ATTATTGGCTCA 1060
|||| || || ||||||||||| ||||||||||||||| ||||| || || |||||||||
Sbjct 943 TGAA-GAATCATGGAGTGGTTTGGGGAGAATGGGTGCAGCAACCATTGAT-ATTGGCTCA 1000
Query 1061 TCCATCAGTAGGCTGCTTCT-TGAGTCATTGCGGATTCGGGTCAATGTGGGAATCTATAA 1119
|||||||||||| ||||| | ||| |||||| || || || ||||||||||| ||| ||
Sbjct 1001 TCCATCAGTAGGATGCTT-TGTGAATCATTGTGGGTTTGGATCAATGTGGGAGTCTCTAG 1059
Query 1120 TGAGTGATTGCCAAATAGTTTTGCTTCCATTTTTG-GCTGATCAAGTTCTCAACACAAGA 1178
||||||||||||||||||| |||||||||| |||| | |||||||||||||||||| |||
Sbjct 1060 TGAGTGATTGCCAAATAGTATTGCTTCCATATTTGTG-TGATCAAGTTCTCAACACTAGA 1118
Query 1179 TTGATGACCGAAGAACTCAAGGTTTCGGTTGAAGTGCAAAGAGAAGAAACAGGATGGTTC 1238
||||||| || ||||| ||||||| || |||||| |||||||||||||||||||||||
Sbjct 1119 TTGATGAGTGAGGAACTTGAGGTTTCTGTGGAAGTGGAAAGAGAAGAAACAGGATGGTTC 1178
Query 1239 TCGAAGGAGAGCTTGA-GTGTTGCTATCACATCTG-TGATGGACCAAGCTAGTGAGATCG 1296
||||| |||||||| | ||||||| ||||| | || | |||||| ||| ||||||| | |
Sbjct 1179 TCGAAAGAGAGCTT-ATGTGTTGCGATCACCT-TGGTAATGGACAAAGATAGTGAGTTAG 1236
Query 1297 GGAATCTGGTGAGAAGGAACCATTCCAAATTGAAGGAGGTTTTGGTTAGTGATGGATTAT 1356
||||||||||||| | |||||| | |||||||| |||| |||||||||| |||||||||
Sbjct 1237 GGAATCTGGTGAGGACGAACCACGCTAAATTGAAAGAGGCTTTGGTTAGTCATGGATTAT 1296
Query 1357 TAACCGGTTACACCGATAAATTTGTTGACACTTTGGAGAATCTTGTCAGCGAGACAAAGC 1416
|||||| ||||||||||||||||||||| |||||| || |||| |||| ||| ||||| |
Sbjct 1297 TAACCGATTACACCGATAAATTTGTTGAAACTTTGCAGGATCTAGTCAACGATACAAATC 1356
Query 1417 GTGAATGAAA 1426
|||||||||
Sbjct 1357 TTGAATGAAA 1366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60373038325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5