BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64960.1
Length=3767
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475499 jgi|Araly1|475499|fgenesh2_kg.2__629__AT1G64960.1 5446 0.0
Ahg475500 jgi|Araly1|475500|fgenesh2_kg.2__630__AT1G64970.1 115 2e-24
> Ahg475499 jgi|Araly1|475499|fgenesh2_kg.2__629__AT1G64960.1
Length=3747
Score = 5446 bits (2949), Expect = 0.0
Identities = 3514/3783 (93%), Gaps = 53/3783 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAAAAGGCTCCGGTCATCTCTCAAGACATCCTCCGAAGAATTCCTCTCATCCGCC 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1 ATGGAGAAAAGGCTCCGGTCATCTCTCAAGACATCCGCCGAAGAATTCCTCTCCTCCGCC 60
Query 61 GTCAAATTAACCCTTAAATCCTCAAAACCCTCACTAAAAACCATCATCAACGCCGTCAAA 120
|||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 61 GTCAAATTAACCCTAAAATCCTCTAAACCCTCACTAAAAACCATCATCTACGCCGTCAAA 120
Query 121 CCTTCCTCTGACCTCTCATCTTCTCTCCCACTCGCTCTTCACAACTCCATCCTCCACCAC 180
|| || || ||||||||||||||||||||||||||||||| |||||||||| |||| ||
Sbjct 121 CCCTCGTCGGACCTCTCATCTTCTCTCCCACTCGCTCTTCTCAACTCCATCATCCAAAAC 180
Query 181 ACAGAATCCTTCCAAAAACTC-CTCGACGAAGTTAATAACAACAATACCTATATCCCTTC 239
||||| ||||||||||||||| | || ||||| || | |||||| ||||| |||||||
Sbjct 181 ACAGAGTCCTTCCAAAAACTCGC-CGGCGAAG---ATGATAACAATCCCTATGTCCCTTC 236
Query 240 TCCTTCCAATTCGCCTCCAACGAAACGACACCGTGGTACCACCGGAACCTCACCAGATTC 299
||||||||||||||||||||||||||| ||||| ||| |||||||| | ||| |||||
Sbjct 237 TCCTTCCAATTCGCCTCCAACGAAACGCCACCGCGGT---ACCGGAACTTTACCCGATTC 293
Query 300 GGATTTGGATCAACGTAAGCATCAGATCCTTGCTTCTCTTCAGATTCTCTCTTATGTTCT 359
|||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||| |
Sbjct 294 GGATTTGGATCAGCGTAAGCTTCAGATCCTTGCTTCTCTTCAGATTCTCTCTCATGTTGT 353
Query 360 TCATTTATGTCTTTTAAATCCGAAGAATGCGTTTCCTACTTCCGATTTACTTCCCGCTGC 419
||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||
Sbjct 354 TCATTTATGTCTTTTAAGTCCGAAGAAAGCGTTTTCTACTTCCGATTTACTTCCCGCTGC 413
Query 420 TCAAGCTTTGCATAATAATCTTAGA-TTGTTCGAATCGGATTCGGTTTTGTGTCTTGAGA 478
||||| |||||||||| |||||||| || ||||| |||||||||||||||||||||||||
Sbjct 414 TCAAGTTTTGCATAATCATCTTAGACTT-TTCGAGTCGGATTCGGTTTTGTGTCTTGAGA 472
Query 479 TTGCT-GGAGTTTGTGAGTGTTGGTGGAAGGAAGGTTTAGTGGGAAGAGAATCTTTGATT 537
| ||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 473 TCGCTGGGA-TTTGTGAGTGTTGGTGGAAGGAAGGTTTAGTGGAAAGAGAATCTTTGATT 531
Query 538 TCTCAGTCGTTACCGTTTTTGCTATCGAGGTCATTGACATTGAAGAAGAAAGTTGATGTT 597
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 532 TCTCAGTCGTTACCGTTTTTGCTTTCGAGGTCATTGACATTGAAGAAGAAAGTAGATGTT 591
Query 598 CATAGAGTTTATATGCTT-AGAGAAGCTTTTACATTGTTTGATTTTGAGGATGAGAGTAT 656
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 592 CATAGAGTTTATATG-TTGAGAGAAGCTTTTACATTGTTTGATTTTGAGGATGAGAGTAT 650
Query 657 AGAAGATCTTAGGATGTTGCTT-ATGCGGTGTGTTGTTTCGCCGTTGTATGTGAAGACTG 715
|||||||| ||||||||| || ||||| ||||| ||||||||||||||||||||||| |
Sbjct 651 TGAAGATCTGAGGATGTTG-TTGATGCGATGTGTGGTTTCGCCGTTGTATGTGAAGACCG 709
Query 716 AAGATGGTCAGAGATTTGTTTCTTTTGCTTTCGGGCTTAGTCGACAGTTGATGAAATCTG 775
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 710 AAGATGGTCAGAGATTTGTTTCTTTTGCTTTCGGGCTTAGTCGACAGTTGATGAAAGCTG 769
Query 776 GTCTTGCTGTTGTTAAGGCTCAGATTCCTTTGGGGAGCAAATCTGTGCTTGAAGGTTTTG 835
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 770 GCCTTGCTGTTGTTAAGGCTCAGATTCCTTTGGGGAGGAAATCTGTGCTTGAAGGCTTTG 829
Query 836 GTGGGATTTTGTTTAGAGCTTGGAAAGAAGTGGAGTTAGATTTAAAAGGTGAGATTGAAG 895
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 830 GTGGGATTTTGTTTAGAGCTTGGAAAGAAGTGGAGCTAGATTTGAAAGGTGAGATTGAAG 889
Query 896 ATGGGTTTTTGCAGGGGATTATTGATAGTGCTATTCACGCTAGTTCGTCCGCCTTTGCTG 955
|||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||
Sbjct 890 ATGGGTTTTTGCAGGGGATTATCGATAGTGCTATTCACGCCAGTTCGTGCGCCTTTGCTG 949
Query 956 CCTCGTTAAGGAGGGTTTTAGGCG-GGTTT-ATTAGTCAGCGGACCTCTCAAGGTGTTGA 1013
||||||||||||||||||| || | ||||| || ||||||||||| ||||||| |||||
Sbjct 950 CCTCGTTAAGGAGGGTTTT-GG-GAGGTTTCATCAGTCAGCGGACAACTCAAGGAGTTGA 1007
Query 1014 GAAGCTTCTCTTTA-CTCTTGCTGAGCCTATGATATTTCGCTCGTTACAGGTTGCAAATT 1072
|||||||||||||| | ||||||||||||||||||||||| || || |||||||||||||
Sbjct 1008 GAAGCTTCTCTTTAGC-CTTGCTGAGCCTATGATATTTCGATCATTGCAGGTTGCAAATT 1066
Query 1073 CAAATGTTCGTTTAAATGCTTTACATTTGCTTCTGGATCTTTTCCCCATGGAGGATCCAG 1132
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1067 CAAATGTTCGTTTAAATGCTTTACATTTGCTTCTGGATCTTTTCCCCATGGAGGATCCCG 1126
Query 1133 ATGCAACAAAAGAAGCAAAAGATACTCTGCTTGACAAACAGTTCTACTTGTTGGAAAAAT 1192
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1127 ATGCAACAAAAGAAGCAAAAGATACCCTGCTTGACAAACAGTTCTACTTGTTGGAAAAAT 1186
Query 1193 T-ATTGAGTGATGAATGCCCAGATGTGAGGTCTGTTGCTGTGGAAGGTCTCTCTCGAGTT 1251
| | |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1187 TGA-TGAGTGATGAATACCCAGATGTGAGGTCTGTTGCTGTGGAAGGTCTCTGTCGAGTT 1245
Query 1252 TTCTATCTTTTCTGGGAAGTGATCCCATCAGCAACAATTACCAAGGTCCTCACGAAAATT 1311
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1246 TTCTATCTTTTCTGGGAAGTGATCCCATCAACAACAATTACCAAGGTCCTCACAAAAATT 1305
Query 1312 TTCGATGATATGTCACATGAATCGTGCAGTGAGGTTAGACTTTCAACGGTTAATGGTATA 1371
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1306 TTCGATGATATGTCACATGAATCGTGCAGTGAGGTTAGACTTTCAACCGTTAATGGTATA 1365
Query 1372 ACTTATCTCCTCGCGAACCCACAATCCCATGGCATTCTTAAAGTGATTCTGCCAAGACTG 1431
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 1366 ACTTATCTCCTCGCGAACCCACAATCCCATGGAATTCTTAAAGTGGTTCTGCCAAGACTG 1425
Query 1432 GGGCATTTGATGCTAGATAGTGTTACTTCAGTACGCGTTGCAATGGTAGATCTACTGCTT 1491
|||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||
Sbjct 1426 GGGCATTTGATGCTAGATAGTGTTACTTCAATACGTGTTGCGATGGTAGATCTACTGCTT 1485
Query 1492 CTTATACGAGATGTTCGCGCTTTCCAGTTTAACACGGTAGTGAGCTTGGATGTGTTATTA 1551
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1486 CTTTTACGAGATGTTCGCGCTTTCCAGTTCAACACGGTAGTGAGCTTGGATGTGTTATTA 1545
Query 1552 TCTGTGCTTGCCTCTGATCAGACTCATGTTGCTAAGGGAATCGCTCGACTGCTAATACCA 1611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1546 TCTGTGCTTGCCTCTGATCAGACTCATGTTGCTAAGGGAATCGCTCGACTGCTAATACCA 1605
Query 1612 TCATACTTTCCATCACGAAAGAGAGCTGAGGAGGCATGCCAGCGATGTAGGACACTCATA 1671
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1606 TCATACTTTCCATCAAGAAAGAGAGCTGAGGAGGCATGCCAGCGATGTAGGACACTCATA 1665
Query 1672 AACAGAAACCCAAAGGCTGGTGCAAGATTTTGCGAATTTTTAGTATCTCTAGGAGCAACC 1731
||||||||||||| |||||||||||| |||| ||||||||| |||||| |||||||||||
Sbjct 1666 AACAGAAACCCAATGGCTGGTGCAAGGTTTTCCGAATTTTTGGTATCTTTAGGAGCAACC 1725
Query 1732 GTTAAATCTGTACTGCACCTTGTTGGATTCTTCTTGAATTCAGTTTTGTCAGGTGATAAG 1791
||| |||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 1726 GTTCAATCTGTACTGCACCTCGTTGGGTTCTTCTTGAATTCAGTCTTGTCAGGTGATAAG 1785
Query 1792 CTATTGGAGAATCAGACTGAAGGCTTGCTTCGTGCTGCGTACTATCTCTGTAAAGATTTG 1851
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1786 CTAGACGAGAATCAGACTGAAGGCTTGCTTCGTGCTGCGTACCATCTCTGTAAAGATTTG 1845
Query 1852 GTTGCTGATTCTGGGTGTATGGCCTCCCTGAAAGAGTTGTTACCTGGAGAAAAATTGAAA 1911
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1846 GTTGCTGATTCTGGGTGTATGGCCTCCCTGAAAGAGTTGTTACCTGGAGAAAAAATGAAA 1905
Query 1912 AGCTTGCTAGCTTTCGCACCCACTGCACAGGCTCAGTCATCTGTCATTGATATAATCACT 1971
|||||||| ||||| |||||||||||||||||| |||| ||||| |||||||||| ||
Sbjct 1906 AGCTTGCTTGCTTTTGCACCCACTGCACAGGCTGTGTCAGCTGTCTTTGATATAATTGCT 1965
Query 1972 ATGGTCTCCCCTGATATTGTCTCTGAAGTCCTTGAAGATTGCATGAATTTAGTTGTTAAT 2031
||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||| |||
Sbjct 1966 ATGGTCTCCCCTGATATCGTCTCTGAAGTCCTAGAAGATTGCATGAATTTAGCTGTAAAT 2025
Query 2032 TGTGGTGGTTTGCCTAGTGATGCAGGACGACAGACGGAGTTGAGATCTGTACACAAGTTA 2091
||||||||||| ||| | ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2026 TGTGGTGGTTTACCTGGGGATGCAGGACGACAGACCGAGTTGAGATCTGTACACAAGTTA 2085
Query 2092 CTCCTGTCTTCTAATGCCTTTTGTGACCTCATTGGAACTTTTACCAGTATCATGCAGAAG 2151
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 2086 CTCCTGTCTTCTAATGCCTTTCGTGACCTCATTGGAACTTTTACCAGTATCGTGCAGAAG 2145
Query 2152 ACTGCGTACCGTTGTCAAATCAATTTTGGCTATGAAGTAGAAAGAAAGAATTTACAGTCC 2211
|||||||||||||||||||||||||||||||| |||||||||||||||||| | || |||
Sbjct 2146 ACTGCGTACCGTTGTCAAATCAATTTTGGCTACGAAGTAGAAAGAAAGAATGTGCATTCC 2205
Query 2212 ATGAAGAGGAAGAAATCAAAATCCTCTGGAAAATCTTCGGTAAGGTGGAAACATGTTAGC 2271
||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 2206 ATGAAGAGGAAAAAATCAAAGTCCTCTGGAAAATCTTCGGCAAGGTGGAAACATGTTAGC 2265
Query 2272 GGAAAAAATGCAATCAGTTTCGAGGAAGATTATTTGGTTGCTGTAGGAATAGCATGGCAA 2331
||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||
Sbjct 2266 GGAAAAAATGCAATCCGTTTCGAGGAAGATTATTCGGTTTCTGTAGGAATAGCATGGCAG 2325
Query 2332 ATAAAGGATTTACTCACTACCGAAGATGCACGTAAATCTATACTGGAGTCTGATATTGAG 2391
||||||||||||||||||| ||||| |||||||||| |||||||||||||||| |||||
Sbjct 2326 ATAAAGGATTTACTCACTATCGAAGCTGCACGTAAAGCTATACTGGAGTCTGACATTGAA 2385
Query 2392 GAGCTGCTCCTTTCCTTAAAAGTCGTCTCACACACTAGCATTTTGCAAGCCACTTGTTGT 2451
||||| |||||| |||| ||||||||||| || ||||||||| ||||||||||||||||
Sbjct 2386 GAGCTACTCCTTGCCTTGAAAGTCGTCTCCCAGACTAGCATTCTGCAAGCCACTTGTTGC 2445
Query 2452 GAATACATGGACGTGAATCCAGATATTATGGACCAAACAATGGATCACATCCTAGTCTGT 2511
||||||||||||||| | |||||||| ||||||| |||||||||||||||||||| ||||
Sbjct 2446 GAATACATGGACGTGTACCCAGATATCATGGACCGAACAATGGATCACATCCTAGGCTGT 2505
Query 2512 ACAGATGAACTATTTCAGGCAGGTGACATTGGAACGCCAGGCACCACATCTCCAGAGGCT 2571
|||||||||||||||||| |||| |||| |||||||||||||| ||||||||||||||||
Sbjct 2506 ACAGATGAACTATTTCAGACAGGGGACAGTGGAACGCCAGGCATCACATCTCCAGAGGCT 2565
Query 2572 AACCTTAGCAAGAAACCGACTACAAGTAACGGCAACCAACCAAAACGAAGAAATAGAAAT 2631
||||||||||| ||||| |||||||||||||||| |||||||||| ||||| || | |
Sbjct 2566 AACCTTAGCAAAAAACCCACTACAAGTAACGGCAGCCAACCAAAAAGAAGACATTCCATT 2625
Query 2632 GCTCGTGATGATGCTTCTGAAGGATCAAAGGAAGGAGGTGTACTGAACAAGGTCAAAATG 2691
||| |||||||||||||||| |||||||||||||||||||| || ||||| |||||||||
Sbjct 2626 GCTGGTGATGATGCTTCTGAGGGATCAAAGGAAGGAGGTGTGCTTAACAATGTCAAAATG 2685
Query 2692 CTAACTGCGATTTTCAAGTTTTTTGTTGAGTCTACAGAGATGGGTCTAGCTTCCAACTTT 2751
||||||| |||| ||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 2686 CTAACTGTGATTCTCAAGTTTTTTGTTGAGTCTACAGATATGGGTCTAGCTTCCCACTTC 2745
Query 2752 CAAGCAAGTATGTTTAAGTTTTCATCTGCGTATCTAAAGTATGTCATCTCCATTTTCAAC 2811
|||||||| ||||| ||||| ||||||| ||||||||||||| ||||| ||||||||
Sbjct 2746 CAAGCAAGGATGTTGAAGTTCACATCTGCATATCTAAAGTATGCCATCTTGATTTTCAAT 2805
Query 2812 GACCATTCAACCGGTAAGTTAGAATTTGAGGACGCTGATATGAAGGAAATGATTCTGTGT 2871
||||||||||||||||||||| |||||||||| || ||||||||||| ||||||||||||
Sbjct 2806 GACCATTCAACCGGTAAGTTACAATTTGAGGATGCAGATATGAAGGACATGATTCTGTGT 2865
Query 2872 ACAAAAAGCTCCACCAGTTATGCCGGAAAGTTCATAAACCTAGTGATGAGACATGCAACC 2931
||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||
Sbjct 2866 ACAAAAAGCTCCACCAGTTATGCTGGAAAATTCATAAACCTAGTGCTGAGACATGCAACC 2925
Query 2932 GAAGCTTCACGCCCTTTGTTTGAATCATTTGACCTTGCAAATGACCTGCTTGATCTCTTC 2991
|||||||| | |||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 2926 GAAGCTTCTCATCCTTTGTTTGAAGCTTTTGACCTTGCAAATGACCTGCTTGATCTCTTC 2985
Query 2992 ACCATGGTTGAGAAATCGT-TAGGCTCGGCTTATGCATCAAGAATTGTGTCAGCTTTAAA 3050
||||||||||||| ||| | ||||||| ||||||||||||||| ||||| | ||||||||
Sbjct 2986 ACCATGGTTGAGATATC-TCTAGGCTCAGCTTATGCATCAAGACTTGTGACCGCTTTAAA 3044
Query 3051 CCCTTGGATTCCAGATTTGGTTCTTGCACTAGGACCTTGTTTCATCAACAACGACA---- 3106
||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 3045 CCCCTGGATACCAGATTTGGTTCTTGCACTAGGACCCTGTTTCATCAACAACGACAACTT 3104
Query 3107 -G-CGAAGAAAGTTCATACACCAGCTCATTCAACCACATCAAACTCTGCTTTCCTTCATG 3164
| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 3105 CGACGAAGAAAGTTCATACACCAGCTCATTCAACCACATCAAACTCTGCGTTCCATCATG 3164
Query 3165 GCTTCTTACATGTGCGAAGATCGAACTACATGAAATTAACAAAGAAGATGTGACTGAGAC 3224
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 3165 GCTTCTTACATGTGCGAAGATCGAACTACATGAAATTAACAAAGAAGATGAGACTGAGAC 3224
Query 3225 CTCGGGTTTCCTGGCATTaaaaaaaCTGAGAAACACTATATTTACATTGGTGAAAGGTAA 3284
| ||| ||||| ||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 3225 CCCGGATTTCCCGGCATTAAAAAGACTGAGAAACACCATATTTACATTGGTGAAAGGTAA 3284
Query 3285 CACCAAGGTGTTAGATGCAATTGGTTATGTTCTTTTGTTATGTTTGGCAGTCTGTATAGA 3344
|||||||||| |||||| ||||||||||||||||||| | ||||||||||| ||||||||
Sbjct 3285 CACCAAGGTGATAGATGGAATTGGTTATGTTCTTTTGATGTGTTTGGCAGTGTGTATAGA 3344
Query 3345 GAAGAGGGATTACAGTACGGCTCTCGGGTTGCTACACTTGGTATGTGTGAAGTTGGTAGG 3404
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 3345 GAAGAGGGATTACAGTACGGCTCTCGGGTTGCTACACTTTGTATGTGTGAAGTTGGTAGG 3404
Query 3405 TAGTGAAGATAGAGAGTGGAAAGAGCTGGACACAATGTTGGTCTTACTTCCGAGAATTTA 3464
||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||| ||
Sbjct 3405 TAGTGAAGATAGAGAATGGAAAGAGCTGGACACAATGTTGGTCTCACTTCCAAGAATATA 3464
Query 3465 CCCGATAATAGAGCGAGAGATTGGTGAAGGAAGAGATGAAGATGAAGTGAAGACGCTGGA 3524
|||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 3465 CCCGATAATAGAGCAAGAGATTGGTGAAGAAAGAGATGAAGATGAAGTGAAGAAGCTGGA 3524
Query 3525 GGCTGCAAGAGAACTGCTTCAACCTGTGTGGATGTACCATGTCTACGAAACCGGAAGGTT 3584
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3525 GGCTGCAAGAGAATTGCTTCAACCTGTGTGGATGTACCATGTCTACGAAACCGGAAGGTT 3584
Query 3585 CCACATGATGGATGAGGAAGAAGAATAGATAAGAATGTAACATTATTCGAGAGCAGTACT 3644
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 3585 CCACATGATGGATGAAGAAGAAGAATAGATAAGAAAGTAACATTATTCGAGAGCAGTACC 3644
Query 3645 GTATTATGAGTTACTGCTGAAGCATGTAAATATGAGTTAATCCATGACAATCACTTCCGA 3704
|||| ||| | | || | | | ||| |||||| |||||||||||| ||
Sbjct 3645 GTAT-ATG--T-A------AA---T--A--T--GAGCTAATCCGTGACAATCACTTTTGA 3685
Query 3705 GAGTTTACCAGATAACATGAGCTAATTCATGGTATTTATTGTTTATA-GAAACTACCTTA 3763
|| |||||||||||| |||||||||||||||||||||||||||| || ||||||||||||
Sbjct 3686 GAATTTACCAGATAATATGAGCTAATTCATGGTATTTATTGTTT-TAAGAAACTACCTTA 3744
Query 3764 GAC 3766
|||
Sbjct 3745 GAC 3747
> Ahg475500 jgi|Araly1|475500|fgenesh2_kg.2__630__AT1G64970.1
Length=1314
Score = 115 bits (62), Expect = 2e-24
Identities = 77/84 (92%), Gaps = 2/84 (2%)
Strand=Plus/Minus
Query 3685 TCCATGACAATCACTTCCGAGAGTTTACCAGATAACATGAGCTAATTCATGGTATTTATT 3744
||| |||||||||||| |||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1314 TCCGTGACAATCACTTTTGAGAATTTACCAGATAATATGAGCTAATTCATGGTATTTATT 1255
Query 3745 GTTTATA-GAAACTACCTTAGACA 3767
|||| || ||||||||||||||||
Sbjct 1254 GTTT-TAAGAAACTACCTTAGACA 1232
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 142335323020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5