BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64970.1
Length=1415
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475500 jgi|Araly1|475500|fgenesh2_kg.2__630__AT1G64970.1 1842 0.0
Ahg475499 jgi|Araly1|475499|fgenesh2_kg.2__629__AT1G64960.1 139 5e-32
> Ahg475500 jgi|Araly1|475500|fgenesh2_kg.2__630__AT1G64970.1
Length=1314
Score = 1842 bits (997), Expect = 0.0
Identities = 1218/1320 (92%), Gaps = 34/1320 (3%)
Strand=Plus/Plus
Query 68 AATAATCCCTGACTTCGTCACGTTTCTTTGTATCTCC-AACGTCCAATAAATGAAAGCAA 126
|||||| ||||||| ||||||||||||||| ||||| |||| || |||||||||||| |
Sbjct 20 AATAATTTCTGACTTAGTCACGTTTCTTTGTTTCTCCAAACGGCC-ATAAATGAAAGCGA 78
Query 127 CTCTAGCAGCACCCTCTTCTCTCACAAGCCTCCCTTATCGAACCAACTCTTCTTTCGGCT 186
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 79 CTCTAGCAGCACCCTCTTCTCTCACAAGCCTCCCTTTTCGAACCAACGCTTCTTTCGGCT 138
Query 187 CAAAGTCATCGCTTCTCTTTCGGTCTCCATCCTCCTCCTCCTCAGTCTCTATG---ACGA 243
| | | |||||||||||||||||||||| | | || |||||||||||| || |
Sbjct 139 C--A-CCGTCGCTTCTCTTTCGGTCTCCAT--T-AT-CT--TCAGTCTCTATGACAACAA 189
Query 244 CAA---CGCGTGGAAACGTGGCTGTGGCGGCTGCTGCTACATCCACTGAGGCGCTAAGAA 300
||| |||| || |||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 190 CAACGGCGCGAGGGAACGTGGCTGTGGCCGCTGCTGCGACATCCACCGAGGCGCTAAGAA 249
Query 301 AAGGAATAGCGGAGTTCTACAATGAAACTTCGGGTTTGTGGGAAGAGATTTGGGGAGATC 360
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 250 AAGGAATAGCGGAATTCTACAATGAAACTTCGGGTTTGTGGGAAGATATTTGGGGAGATC 309
Query 361 ATATGCATCATGGCTTTTATGACCCTGATTCTTCTGTTCAACTTTCTGATTCTGGTCACA 420
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 310 ACATGCATCATGGCTTTTATGACCCTGATTCTTCTGTTCAACTCTCTGATTCTGGTCACC 369
Query 421 AGGAAGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTTGCCGGTGTTACTGATGAAG 480
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 370 GGGAAGCTCAGATCCGAATGATTGAAGAGTCTCTCCGTTTCGCCGGTGTTACTGATGAAG 429
Query 481 AGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGATTGGAGGAAGCTCAA 540
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 AAGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGATTGGAGGAAGCTCAA 489
Query 541 GATATCTTGCCTCTAAATTTGGAGCTGAATGCATTGGCATTACTCTCAGCCCTGTTCAGG 600
| |||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 490 GGTATCTTGCTTCTAAATTTGGAGCCGAATGCATTGGCATTACTCTAAGCCCTGTTCAGG 549
Query 601 CCAAGAGAGCCAATGATCTCGCGGCTGCTCAATCACTCGCTCATAAGGCT-TCCTTCCAA 659
|||||||||||||||| ||||||||||||||||||||| ||||||||| | || || |||
Sbjct 550 CCAAGAGAGCCAATGACCTCGCGGCTGCTCAATCACTCTCTCATAAGG-TATCTTTTCAA 608
Query 660 GTTGCGGATGCGTTGGATCAGCCATTCGAAGATGGAAAATTCGATCTAGTGTGGTCGATG 719
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 609 GTTGCGGATGCGTTGGATCAGCCATTCGAAGATGGAAAATTCGATCTGGTGTGGTCGATG 668
Query 720 GAGAGTGGTGAGCATATGCCTGACAAGGCCAAGTTTGTAAAAGAGTTGGTACGTGTGGCG 779
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 669 GAGAGTGGTGAGCATATGCCTGACAAGGCCAAGTTCGTGAAAGAGTTGGTACGTGTGGCG 728
Query 780 GCTCCAGGAGGTAGGATAATAATAGTGACATGGTGCCATAGAAATCTATCTGCGGGGGAG 839
||||||||||| |||||||||||||||||||||||||| ||||| ||||| | ||||||
Sbjct 729 GCTCCAGGAGGAAGGATAATAATAGTGACATGGTGCCACAGAAACCTATCCACCGGGGAG 788
Query 840 GAAGCTTTGCAGCCGTGGGAGCAAAACATCTTGGACAAAATCTGTAAGACGTTCTATCTC 899
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 789 AAAGCTTTGCAGCCATGGGAGCAAAACATCTTGGACAAAATCTGTAAGACATTCTATCTC 848
Query 900 CCGGCTTGGTGCTCCACCGATGATTATGTCAACTTGCTTCAATCCCATTCTCTCCAGGAT 959
||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 849 CCGGCGTGGTGCTCCACCGATGATTATGTCAAATTGCTGCAATCCCATTCTCTCCAGGAT 908
Query 960 ATTAAGTGTGCGGATTGGTCAGAGAACGTAGCTCCTTTCTGGCCTGCGGTTATACGGACT 1019
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 909 ATTAAGTGTGCGGATTGGTCAGAGAACGTAGCTCCTTTCTGGCCTGCCGTTATACGGACT 968
Query 1020 GCATTAACATGGAAGGGCCTTGTGTCTCTGCTTCGTAGTGGTATGAAAAGTATTAAAGGA 1079
||| |||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 969 GCACTAACATGGAATGGCCTTGTGTCTCTGCTTCGTAGTGGTATGAAGAGTATAAAAGGA 1028
Query 1080 GCATTGACAATGCCATTGATGATTGAAGGTTACAAGAAAGGTGTCATTAAGTTTGGTATC 1139
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1029 GCGTTGACAATGCCATTGATGATCGAAGGTTACAAGAAAGGTGTCATTAAGTTTGGCATC 1088
Query 1140 ATCACTTGCCAGAAGCCACTCTAAGTCTAAAGCTATACTAGGAGATTGAATAAGACTATA 1199
||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1089 ATCACTTGCCAGAAGCCCCTCTAAGTCTAAAGCTATACTAGGAGATTGAATAAGA----- 1143
Query 1200 AGAGTAGTGTCTCATGTGAAAGCATGAAATTCCTTAAAAACGTCAATGTTAAGCCTATGC 1259
| | |||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1144 -G--T-----CTCATGTGAATGCATGAGATTCCTTAAAAACGTCAATGTTAAGCCTATGC 1195
Query 1260 TTCGTTATTTGTTTTAGATAAATATCATTTCACTCTTGTCTAAGGTAGTTTCTATAAA-C 1318
||||||||||||||||| ||| ||| ||||||||||||||||||||||||||| |||| |
Sbjct 1196 TTCGTTATTTGTTTTAGCTAAGTATAATTTCACTCTTGTCTAAGGTAGTTTCT-TAAAAC 1254
Query 1319 AATAAATACCATGAATTAGCTCATGTTATCTGGTAAACTCTCGGAAGTGATTGTCATGGA 1378
|||||||||||||||||||||||| |||||||||||| |||| |||||||||||| |||
Sbjct 1255 AATAAATACCATGAATTAGCTCATATTATCTGGTAAATTCTCAAAAGTGATTGTCACGGA 1314
> Ahg475499 jgi|Araly1|475499|fgenesh2_kg.2__629__AT1G64960.1
Length=3747
Score = 139 bits (75), Expect = 5e-32
Identities = 92/100 (92%), Gaps = 2/100 (2%)
Strand=Plus/Minus
Query 1297 GTCTAAGGTAGTTTC-TATAAACAATAAATACCATGAATTAGCTCATGTTATCTGGTAAA 1355
||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||
Sbjct 3747 GTCTAAGGTAGTTTCTTA-AAACAATAAATACCATGAATTAGCTCATATTATCTGGTAAA 3689
Query 1356 CTCTCGGAAGTGATTGTCATGGATTAACTCATATTTACAT 1395
|||| |||||||||||| |||||| |||||||||||||
Sbjct 3688 TTCTCAAAAGTGATTGTCACGGATTAGCTCATATTTACAT 3649
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52907350305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5