BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64980.1
Length=1235
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475501 jgi|Araly1|475501|fgenesh2_kg.2__631__AT1G64980.1 1749 0.0
> Ahg475501 jgi|Araly1|475501|fgenesh2_kg.2__631__AT1G64980.1
Length=1190
Score = 1749 bits (947), Expect = 0.0
Identities = 1133/1218 (93%), Gaps = 31/1218 (3%)
Strand=Plus/Plus
Query 14 TCTCTTTCTCCTTTGTTCCACATTTTAGTCCACAAATCTCCATTTCTGTCGGTGCTCCAA 73
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTTTCTCCTTTTTTCCACATTTTAGTCCACAAATCTCCATTTCTGTCGGTGCTCCAA 60
Query 74 GCTTTTTCTCAAGATCCAAGTTCTCATCATCTCCTCCAGATTCGAATTCTGCAACAACAA 133
||||||| |||||||||||| ||||||||| |||||||||| ||||||||||||||||||
Sbjct 61 GCTTTTTGTCAAGATCCAAGCTCTCATCATTTCCTCCAGATCCGAATTCTGCAACAACAA 120
Query 134 TGACAATTAGCAACGGAGATGTCAAATCTGAAACCTGCAACAATGGCTCTTCTGAGAAGA 193
|||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 121 TGACAATTAGCAACGGCGATGTCAAATCTGATACCTGCAACAATGGTTCTTCTGAGAAGA 180
Query 194 AACCATTCAGGATCTTCGTTGGTTACGATCCACGAGAAGATCTTGCCTACCAAGTTTGTC 253
|||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 181 AACCTTTCAGGATCTTTGTTGGTTACGATCCACGCGAAGATCTTGCTTACCAAGTCTGTC 240
Query 254 ATCATTCAATCACAAAAAGATCTTCAATCCCTGTAGAGATCACACCAATTATTCAATCAG 313
|||||||||||| |||||||||||||||||||||||||||| ||| ||| |||||||||
Sbjct 241 GTCATTCAATCACCAAAAGATCTTCAATCCCTGTAGAGATCATACCGATTGTTCAATCAG 300
Query 314 ATCTTCGAAAGAAAGGTCTGTATTGGAGAGAAAGAGGTCAGTTAGAGAGCACTGAGTTCT 373
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATCTTCGAAAGAAAGGTTTGTATTGGAGAGAAAGAGGTCAGTTAGAGAGCACTGAGTTCT 360
Query 374 CTTTCTCTCGTTTCTTGACTCCTCACTTGTCAGATTACCAAGGTTGGGCTATGTTCGTCG 433
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct 361 CTTTCTCTCGTTTCTTGACTCCTCATTTGTCCGATTACCAAGGTTGGGCTATGTTTGTCG 420
Query 434 ACTGTGATTTCCTCTACCTTGCTGATATCAAGGAACTCACTGATTTGATCGATGATAAAT 493
| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 421 ATTGCGATTTCCTCTACCTTGCTGATATCAAGGAACTTACTGATTTGATCGATGATAAAT 480
Query 494 ATGCGATCATGTGTGTTCAACATGATTATACTCCTAAGGAGACTACTAAGATGGATGGTG 553
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACGCGATCATGTGTGTTCAACATGATTATACTCCTAAGGAGACTACTAAGATGGATGGTG 540
Query 554 CGGTTCAAACTGTGTACCCGAGGAAGAACTGGTCTTCAATGGTGCTTTACAACTGTGGAC 613
|||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 541 CGGTTCAAACCGTGTACCCAAGGAAGAACTGGTCTTCAATGGTGCTTTACAATTGTGGAC 600
Query 614 ACCCTAAGAACAAGACTTTGAGCCCTGAGATTGTTAATACTCAGACTGGTGCGTTTCTCC 673
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 601 ATCCTAAGAACAAGACCTTGAGCCCTGAGATTGTTAATACTCAGACTGGTGCGTTTCTTC 660
Query 674 ATAGGTTCCAGTGGCTTGAGGATGAAGAGATTGGGTCTATTCCTTTTGTGTGGAACTTTC 733
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct 661 ATAGGTTCCAGTGGCTTGAGGACGAAGAGATTGGGTCTATTCCCTTTGTGTGGAATTTTC 720
Query 734 TTGAAGGGCACAATAGGGTTGTTGAGAAAGATCCCACCACGCAGCCTAAAGCGGTGCATT 793
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 721 TTGAAGGGCACAATAGGGTTGTTGAGAAGGATCCCACCACGCAGCCTAAGGCGGTGCATT 780
Query 794 ATACTCGTGGAGGGCCTTGGTTTGATGCTTGGAAGGATTGCGAGTTTGCGGATCTTTGGC 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 781 ATACTCGTGGAGGGCCTTGGTTTGATGCTTGGAAGGATTGCGAGTTTGCGGATCTCTGGC 840
Query 854 TTAATGAGATGGAAGAGTACAACAAAGAGAACAAGAAGGAAGCTGATAACGC-AA-A-GT 910
|||||||||||||||||||||||||||||| |||||| ||||| ||||| || || | ||
Sbjct 841 TTAATGAGATGGAAGAGTACAACAAAGAGAGCAAGAAAGAAGCCGATAATGCGAAGAAGT 900
Query 911 AGAAAGAAAGAAGTAAGAGGTATGTTGTTACTTACCAACACGAGTAGTGAACTTCCTTTA 970
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 901 AGAAAGAAAGAAGTAAGAGGTATGTTGTTACTTACCAACACGAGTAGTGCACTTCCGTTA 960
Query 971 CATAGTGTTGGCTTTGTAGAGCCAGGGATCATTAGTCTTGTGGAGGGCTATGGAGttttt 1030
|||||| ||||||||||||||||| ||| ||||||||||||||||||||||| ||||||
Sbjct 961 CATAGTTTTGGCTTTGTAGAGCCACGGAACATTAGTCTTGTGGAGGGCTATGAAGTTTT- 1019
Query 1031 tttAATTTCATTGAATTCGTTAAATCATTCGCAAACACTATTAGTACCTATATTGAGGTC 1090
| |||||||||||||||||||||||| |||| ||||| | |||| ||||| |||||
Sbjct 1020 ---A-TTTCATTGAATTCGTTAAATCATTTGCAA-CACTA--A-TACCAATATTAAGGTC 1071
Query 1091 ATATGGTATAATAACCCTATTCGTTTGTTTATTTGTTGTGTTTTGTACCTTTGATGGTAT 1150
||||||||||||||||||||| | |||| ||| | ||| | |||||||
Sbjct 1072 ATATGGTATAATAACCCTATT--T--GTTT----GTT-T-TTT---A------ATGGTAT 1112
Query 1151 TTTATTTGTATAATTGATATGTGAATTTATGTAGCATTTCTTTTTAATTGATCTATAATG 1210
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1113 TTTATTTGTATAATTGATATGTGACTTTATGTAGCACTTCTTTTTAATTGATCTATAATG 1172
Query 1211 AGCAGTAGCTCAACATAT 1228
|||| |||||||||||||
Sbjct 1173 AGCACTAGCTCAACATAT 1190
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46128729570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5