BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64990.1
Length=1715
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475503 jgi|Araly1|475503|fgenesh2_kg.2__633__AT1G64990.1 2695 0.0
Ahg945284 jgi|Araly1|945284|scaffold_701513.1 1568 0.0
Ahg925826 jgi|Araly1|925826|scaffold_201387.1 204 2e-51
> Ahg475503 jgi|Araly1|475503|fgenesh2_kg.2__633__AT1G64990.1
Length=1668
Score = 2695 bits (1459), Expect = 0.0
Identities = 1578/1635 (97%), Gaps = 9/1635 (1%)
Strand=Plus/Plus
Query 90 AAGAGAGATCTGGAATTTGGCGACGATGAGTTACGGATGGGCGATATACGAAGGCACGGT 149
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 34 AAGAGAGATCTGAAATTTGGCGACGATGAGTTACGGATGGGCGATATACGAAGGCACGGT 93
Query 150 GGTGATAGCTTCACTAAGTCTCTTAGGATGGGCAGGTTTATGGTTTCTTAATCGGAGATT 209
||| || |||||||| |||| |||||||||||||||||||||||||||||||||||| |
Sbjct 94 GGTTATGGCTTCACTGTGTCTTTTAGGATGGGCAGGTTTATGGTTTCTTAATCGGAGACT 153
Query 210 ATACAAAGAGTATGAAGAGAAACGAGCTTTGGTTCAAATCATTTTCAGTGTCGTCTTCGC 269
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 154 ATACAAAGAGTACGAAGAGAAACGAGCTTTGGTTCAAATCATTTTCAGTGTCGTCTTCGC 213
Query 270 TTTCTCTTGTAATCTATTGCAGCTCGTTTTGTTCGAGATCATACCTGTTCTCTCTAGAGA 329
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 214 TTTCTCTTGTAATCTATTGCAGCTTGTTTTGTTCGAGATCATACCTGTTCTCTCTAGAGA 273
Query 330 GGCAAGGATGATAAACTGGAAGGTGGATCTTTTTTGTTTGATACTTCTTCTGGTTTTCAT 389
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
Sbjct 274 GGCAAGGATGATAAACTGGAAGGTGGATCTTTTTTGTTTAATACTTCTTCTCGTTTTCTT 333
Query 390 GTTGCCGTATTACCATTGCTATTTGATGCTTCGTAATAGTGGTGTAAGAAGGGAGCGTGC 449
|||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 334 GTTGCCATATTACCACTGCTATTTGATGCTTCGTAATAGTGGTGTAAGAAGGGACCGTGC 393
Query 450 CTCTGTTGGGGCTTTCTTATTCTTGTCAGCATTCCTTTACGCATTCTGGCGTATGGGAGT 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 CTCTGTTGGGGCTTTCTTATTCTTGTCAGCATTCCTTTACGCATTCTGGCGTATGGGAGT 453
Query 510 TCATTTCCCTATGCCTTCAGCAGATAAAGGGTTTTTTACCATGCCTCAGCTGGTCAGTAG 569
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 454 TCATTTCCCTATGCCTTCAGCAGATAAAGGTTTTTTTACCATGCCTCAGCTGGTCAGTAG 513
Query 570 AATTGGGGTCATTGGTGTGACCTTAATGGCTGTCTTATCAGGATTTGGAGCTGTAAATTT 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 AATTGGGGTCATTGGTGTGACCTTAATGGCTGTCTTATCAGGATTTGGAGCTGTAAATTT 573
Query 630 ACCCTACAGCTATATATCCCTCTTCATTAGGGAGATTGAAGAAGCAGATATAATATCTTT 689
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 574 GCCCTACAGCTATATATCCCTCTTCATAAGGGAGATTGAAGAAGCAGATATAATATCTTT 633
Query 690 GGAAAGGCAACTGATTCAGTCAACTGAGACGTGCATAGCAAAGAAGAAGAAAATTATTTT 749
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 GGAAAGGCAACTGATGCAGTCAACTGAGACGTGCATAGCAAAGAAGAAGAAAATTATTTT 693
Query 750 GTGTCAATTGGAGGTGGAACGAAATCAAGGATCAGAAGAGAATCAGAAACGTAGCTCTTT 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 GTGTCAATTGGAGGTGGAACGAAATCAAGGATCAGAAGAGAATCAGAAACGTAGCTCTTT 753
Query 810 CTTCAGAAGAATTGTTGGGACTGTTGTGCGGTCGGTTCAAGATGACCAAAAGGAACAAGA 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 CTTCAGAAGAATTGTTGGGACTGTTGTGCGGTCGGTTCAAGATGACCAAAAGGAACAAGA 813
Query 870 CATAAAAATATTGGAAGCGGAGGTGGAAGCCTTAGAGGAGCTGTCAAAACAGTTATTTTT 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 CATAAAAATATTGGAAGCGGAGGTGGAAGCCTTAGAGGAGCTGTCAAAACAGTTATTTTT 873
Query 930 GGAAGTATATGAGCTGCGTCAAGCAAAGGATGCTGCTGCTTATTCTAGAACTTGGAAGGG 989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 GGAAGTATATGAGCTGCGTCAAGCAAAGGATGCTGCTGCTTATTCTAGAACTTGGAAGGG 933
Query 990 TCATGTGCAGAACTTACTTGGTTATGCATGTTCCATTTATTGTGTGTATAAAATGTTGAA 1049
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 934 TCATGTGCAGAACTTACTTGGTTATGCATGCTCCATTTATTGTGTGTATAAAATGTTGAA 993
Query 1050 GTCTCTTCAAAGTGTTGTCTTCAAAGAGGCCGGTACAAAAGATCCTGTCACGACGATGAT 1109
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 994 GTCTCTACAAAGTGTTGTCTTCAAAGAGGCCGGTACAAAAGACCCTGTCACGACGATGAT 1053
Query 1110 CAGCATATTCTTGCGGTTGTTTGATATAGGAGTAGATGCTGCACTCCTCTCACAGTATAT 1169
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 CAGTATATTCTTGCGGTTGTTTGATATAGGAGTAGATGCTGCACTCCTCTCACAGTATAT 1113
Query 1170 ATCCCTGCTGTTCATTGGGATGTTGATTGTGATTTCTGTGAGGGGATTCCTGACGAACCT 1229
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1114 ATCCCTGTTGTTCATTGGGATGTTGATTGTGATTTCTGTGAGGGGATTCTTGACGAACCT 1173
Query 1230 GATGAAGTTTTTCTTTGCTGTCTCAAGAGTGGGAAGTGGGTCTTCAAGCAATGTTGTACT 1289
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1174 GATGAAGTTTTTCTTTGCAGTCTCGAGAGTGGGAAGTGGGTCTTCAAGCAATGTTGTGCT 1233
Query 1290 TTTCCTATCTGAAATCATGGGAATGTACTTTTTGTCTTCAATTCTTCTTATCAGAAAAAG 1349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1234 TTTCCTATCTGAAATCATGGGAATGTACTTTTTGTCTTCAATTCTTCTTATCAGAAAAAG 1293
Query 1350 CTTGAGAAATGAGTACAGGGGAATCATAACAGATGTGTTGGGTGGAGATATTCAGTTTGA 1409
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1294 CTTGAGAAATGAGTACAGGGGAATCATAACAGATGTGTTGGGTGGAGATATTCAATTTGA 1353
Query 1410 TTTCTATCATCGATGGTTTGATGCAATTTTTGTGGCGAGTGCTTTTCTTTCTCTCGTTTT 1469
|||||||||||||||||||||||||||||||||||| || |||||||| |||||| ||||
Sbjct 1354 TTTCTATCATCGATGGTTTGATGCAATTTTTGTGGCAAGCGCTTTTCTGTCTCTCCTTTT 1413
Query 1470 GCTTTCTGCACATTACACGTCTCGTCAATCTGATAAGCACGCCATCGAGTAAGTTTCTTA 1529
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1414 GCTTTCCGCACATTACACGTCTCGTCAATCTGATAAGCACGCCATCGAGTAAGTTTCTTA 1473
Query 1530 TTCAATAATGGTGCCTGAGAGAGTCTTATGATTGTTTGGCCTGACACAA-CGAAAATCAA 1588
|||||| |||||||||||||||||| ||| ||| |||||||| |||||| | ||||||||
Sbjct 1474 TTCAATTATGGTGCCTGAGAGAGTCCTATTATTATTTGGCCTTACACAAACTAAAATCAA 1533
Query 1589 TTTACTACTAGTAAAGGTGACTTAGTGTATAGCTTACAATTGGCTATTTGTTTGTTTTTG 1648
|||||||||||||| || | |||||||||||||||| ||||||||||||||| ||||||
Sbjct 1534 TTTACTACTAGTAATGGGGGCTTAGTGTATAGCTTATGATTGGCTATTTGTTTATTTTTG 1593
Query 1649 ACGCTTATGTGAAAGATTAAACTGATCAGTTCAAAATTTC----TTA-T---ACCATAAA 1700
|||||||||||||||||||||||||||||||||||||||| || | ||||| ||
Sbjct 1594 ACGCTTATGTGAAAGATTAAACTGATCAGTTCAAAATTTCACACTTTCTTGTACCATTAA 1653
Query 1701 CGTTGAATTATGTTT 1715
|||||||||||||||
Sbjct 1654 CGTTGAATTATGTTT 1668
Score = 58.4 bits (31), Expect = 2e-07
Identities = 35/37 (95%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 19 TCGTACAACAGAAGCTCTGGTGTTGAATCGCCATGAG 55
||| ||||||||||||||||||||||||||||| |||
Sbjct 2 TCGAACAACAGAAGCTCTGGTGTTGAATCGCCAAGAG 38
> Ahg945284 jgi|Araly1|945284|scaffold_701513.1
Length=1444
Score = 1568 bits (849), Expect = 0.0
Identities = 1233/1419 (87%), Gaps = 23/1419 (2%)
Strand=Plus/Plus
Query 114 GATGAGTTACGGATGGGCGATATACGAAGGCACGGTGGTGATAGCTTCACTAAGTCTCTT 173
|||| |||||||||||| ||| | ||| || | | ||||||| | || || |||||||
Sbjct 20 GATGGGTTACGGATGGGGGATCTTCGAGGGAATGCTGGTGATTGGATCTCTGTGTCTCTT 79
Query 174 AGGATGGGCAGGTTTATGGTTTCTTAATCGGA-GATTATACAAAGAGTATGAAGAGAAAC 232
||||| ||| ||| | |||||||| ||||||| | || ||||| ||||| |||||||| |
Sbjct 80 AGGATCGGCCGGTCTCTGGTTTCTCAATCGGAGGCTT-TACAAGGAGTACGAAGAGAAGC 138
Query 233 GAGCTTTGGTTCAAATCATTTTCAGTGTCGTCTTCGCTTTCTCTTGTAATCTATTGCAGC 292
||||||||||||||||||||||||| |||||||||||||||||||| || || || ||||
Sbjct 139 GAGCTTTGGTTCAAATCATTTTCAGCGTCGTCTTCGCTTTCTCTTGCAACCTTTTACAGC 198
Query 293 TCGTTTTGTTCGAGATCATACCTGTTCTCTCTAGAGAGGCAAGGATGATAAACTGGAAGG 352
||||| | ||||| ||||| |||||| | |||||||||||||||||| ||||||||||||
Sbjct 199 TCGTTCTCTTCGAAATCATCCCTGTTTTATCTAGAGAGGCAAGGATGGTAAACTGGAAGG 258
Query 353 TGGATCTTTTTTGTTTGATACTTCTTCTGGTTTTCATGTTGCCGTATTACCATTGCTATT 412
||||||| |||||||||||| | || || ||||||||||| || ||||| ||||||||||
Sbjct 259 TGGATCTCTTTTGTTTGATAGTGCTCCTTGTTTTCATGTTACCTTATTATCATTGCTATT 318
Query 413 TGATGCTTCGTAATAGTGGTGTAAGAAGGGAGCGTGCCT-CTGTTGGGGCTTTCTTATTC 471
|||||||||| |||| |||||| |||||||| |||| || |||||||||| || ||||||
Sbjct 319 TGATGCTTCGCAATACTGGTGTTAGAAGGGAACGTG-CTGCTGTTGGGGCCTTGTTATTC 377
Query 472 TTGTCAGCATTCCTTTACGCATTCTGGCGTATGGGAGTTCATTTCCCTATGCCTTCAGCA 531
||| |||| |||||||| || |||||||| |||||| ||||||| ||||||||||| |
Sbjct 378 TTGACAGCGTTCCTTTATGCTTTCTGGCGCATGGGAATTCATTTTCCTATGCCTTC-G-- 434
Query 532 GATAAAGGGTTT-TTTACCATGCCTCAGCTGGTCAGTAGAATTGGGGTCATTGGTGTGAC 590
|| ||| ||||| ||| | |||||||| |||||||| ||||| |||||||||||||||||
Sbjct 435 GACAAA-GGTTTCTTTTCAATGCCTCAACTGGTCAGCAGAATCGGGGTCATTGGTGTGAC 493
Query 591 CTTAATGGCTGTCTTATCAGGATTTGGAGCTGTAAATTTACCCTACAGCTATATATCCCT 650
| | ||||| |||||||| || ||||||||||| ||| | |||||||| |||||||| ||
Sbjct 494 CCTCATGGCCGTCTTATCGGGTTTTGGAGCTGTTAATCTGCCCTACAGTTATATATCGCT 553
Query 651 CTTCATTAGGGAGATTGAAGAAGCAGATATAATATCTTTGGAAAGGCAACTGATTCAGTC 710
|||||||||||||||||||||| |||| |||| ||| |||||||||||||||| || ||
Sbjct 554 CTTCATTAGGGAGATTGAAGAATCAGAAATAAAATCGCTGGAAAGGCAACTGATGCAATC 613
Query 711 AACT-GAGACGTGCATAGCAAAGAAGAAGAAAATTATTTTGTGTCAATTGGAGGTGGAAC 769
|| | ||||| |||||||| |||||||||||||||||||| |||||| ||||||||||||
Sbjct 614 AA-TGGAGACTTGCATAGCTAAGAAGAAGAAAATTATTTTATGTCAAGTGGAGGTGGAAC 672
Query 770 GAAATCAAGGATCAGAAGAGAATCAGAAAC-GTAGCTCTTTCTTCAGAAGAATTGTTGGG 828
||| || || |||||||||| |||| |||| ||| ||||||||||||||| |||| |||
Sbjct 673 GAAGTCTAGTATCAGAAGAGCATCA-AAACGGTAAATCTTTCTTCAGAAGATTTGTCGGG 731
Query 829 ACTGTTGTGCGGTCGGTTCAAGATGACCAAAAGGAACAAGACATAAAAATATTGGAAGCG 888
||||||||||| ||||||||||||||||| ||||| ||||| || ||| || |||| |||
Sbjct 732 ACTGTTGTGCGATCGGTTCAAGATGACCAGAAGGAGCAAGATATTAAACTAATGGAGGCG 791
Query 889 GAGGTGGAAGCCTTAGAGGAGCTGTCAAAACAGTTATTTTTGGAAGTATATGAGCTGCGT 948
|||||||||| ||||| ||||||||||| ||| |||| |||||| | ||||| || ||
Sbjct 792 GAGGTGGAAGGTTTAGAAGAGCTGTCAAAGCAGCTATTCTTGGAAATTTATGAACTCCGC 851
Query 949 CAAGCAAAGGATGCTGCTGCTTATTCTAGAACTTGGAAGGGTCATGTGCAGAACTTACTT 1008
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 852 CAAGCAAAGGATGCTGCTGCTTTTTCTCGAACTTGGAAGGGTCATGTGCAGAACTTACTT 911
Query 1009 GGTTATGCATGTTCCATTTATTGTGTGTATAAAATGTTGAAGTCTCTTCAAAGTGTTGTC 1068
|| ||||| ||||||||||| ||||||||||| ||||| |||||||| |||||||| ||
Sbjct 912 GGCTATGCGTGTTCCATTTACTGTGTGTATAAGATGTTAAAGTCTCTACAAAGTGTCGTT 971
Query 1069 TTCAAAGAGGCCGGTACAAAAGATCCTGTCACGACGATGATCAGCATATTCTTGCGGTTG 1128
||||| ||||| || || |||||||||||||||| |||||||||||||||||||| |||
Sbjct 972 TTCAAGGAGGCGGGCACGAAAGATCCTGTCACGATGATGATCAGCATATTCTTGCAGTTC 1031
Query 1129 TTTGATATAGGAGTAGATGCTGCACTCCTCTCACAGTATATATCCCTGCTGTTCATTGGG 1188
|||||||||||||||||||| ||| | |||||||||||||| |||||| | || ||||||
Sbjct 1032 TTTGATATAGGAGTAGATGCGGCATTGCTCTCACAGTATATTTCCCTGTTATTTATTGGG 1091
Query 1189 ATGTTGATTGTGATTTCTGTGAGGGGATTCCTGACGAACCTGATGAAGTTTTTCTTTGCT 1248
|||||||| ||||| || |||||||||||| |||| || ||||||||||| ||||||||
Sbjct 1092 ATGTTGATCGTGATATCAGTGAGGGGATTCTTGACAAATCTGATGAAGTTCTTCTTTGCA 1151
Query 1249 GTCTCAAGAGT-GGGAAGTGGGTCTTCAAGCAATGTTGTACTTTTCCTATCTGAAATCAT 1307
|| || || || ||| ||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct 1152 GTGTCGAGGGTAGGG-AGTGGATCTTCAAGCAATGTTGTGCTTTTTCTATCTGAAATCAT 1210
Query 1308 GGGAATGTACTTTTTGTCTTCAATTCTTCTTATCAGAAAAAGCTTGAGAAATGAGTACAG 1367
||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||
Sbjct 1211 GGGAATGTACTTTTTGTCTTCCATTCTTCTTATAAGAAAAAGTTTGAGAAATGAGTACAG 1270
Query 1368 -GGGAATCATAACAGATGTGTTGGGTGGAGATATTCAGTTTGATTTCTATCATCGATGGT 1426
||| || |||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1271 AGGG-ATAATAACAGATGTGTTAGGCGGAGATATTCAGTTTGATTTCTATCATCGATGGT 1329
Query 1427 TTGATGCAATTTTTGTGGCGAGTGCTTTTCTTTCTCT-CGTTTTGCTTTCTGCACATTAC 1485
|||||||||| || ||||| || |||||||||||||| | ||||||||||||| || |||
Sbjct 1330 TTGATGCAATATTCGTGGCCAGCGCTTTTCTTTCTCTGC-TTTTGCTTTCTGCGCACTAC 1388
Query 1486 ACGTCTCGTCAA-TCTGATAAGCACGCC-ATCGAGTAAG 1522
|| ||||||||| | |||||||||| || || || ||||
Sbjct 1389 ACATCTCGTCAAAT-TGATAAGCAC-CCGATAGACTAAG 1425
> Ahg925826 jgi|Araly1|925826|scaffold_201387.1
Length=244
Score = 204 bits (110), Expect = 2e-51
Identities = 120/125 (96%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 415 ATGCTTCGTAATAGTGGTGTAAGAAGGGAGCGTGCCTCTGTTGGGGCTTTCTTATTCTTG 474
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 21 ATGCTTCGTAATAGTGGTGTAAGAAGGGAGCGTGCCTCTGCTGGGGCTTTCTTATTCTTG 80
Query 475 TCAGCATTCCTTTACGCATTCTGGCGTATGGGAGTTCATTTCCCTATGCCTTCAGCAGAT 534
|||||||||||||| || || |||||||||||||||||||| ||||||||||||||||||
Sbjct 81 TCAGCATTCCTTTATGCTTTTTGGCGTATGGGAGTTCATTTTCCTATGCCTTCAGCAGAT 140
Query 535 AAAGG 539
|||||
Sbjct 141 AAAGG 145
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64334423805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5