BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G65000.1

Length=680
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg925359 jgi|Araly1|925359|scaffold_200920.1                        446    1e-124


> Ahg925359 jgi|Araly1|925359|scaffold_200920.1
Length=295

 Score =  446 bits (241),  Expect = 1e-124
 Identities = 279/297 (94%), Gaps = 4/297 (1%)
 Strand=Plus/Plus

Query  91   TTGATTACAGTGTTCTTCGAGAATGGAGAAGAAGGAGATGGAGAAGTTGTGCCAAAGGTG  150
            ||| || |||||||| || | |||||||| |||||||||||||||||||||||||| |||
Sbjct  2    TTGGTTTCAGTGTTCATCAACAATGGAGACGAAGGAGATGGAGAAGTTGTGCCAAAAGTG  61

Query  151  CAAACAAAGCTACACAGA-TCTTTCAAACGAAACTTCCTCTTGCCGTTTTCATCCTTCCT  209
            |||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||
Sbjct  62   CAAACAAAGCTACACAGATTC-TTCAAACGACACTTCCTCTTGCCGTTTTCATCCTTCCT  120

Query  210  TCTTCGTTTGTCGTCGTCACGATGACCAGAAAAGGTACTATGAATTGAAACCAGATGATC  269
            |||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct  121  TCTTTGTTTGTCGTCGTCACGATGACCAGAAAAGGTACTATGAACTGAAACCAGAGGATC  180

Query  270  CACCGTATGCTGCCAAGTTCTATGATTGTTGCGGGGCAGAGGATCCTAATGCACCAGGTT  329
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  CACCGTATGCAGCCAAGTTCTATGATTGTTGCGGGGCAGAGGATCCTAATGCACCAGGTT  240

Query  330  GTGTCACAAACCCTCACATTTCATATGATGACTGATGTATGAGTGAGAGCTCTCATA  386
            ||||||| | |||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct  241  GTGTCACCAGCCCTCACATTTCATATGATGACTGATGTATGAGTGAG--CTCTCATA  295



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24970510635


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5