BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65020.1
Length=1233
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475506 jgi|Araly1|475506|fgenesh2_kg.2__636__AT1G65020.1 1788 0.0
Ahg896233 jgi|Araly1|896233|Al_scaffold_0005_199 95.3 9e-19
> Ahg475506 jgi|Araly1|475506|fgenesh2_kg.2__636__AT1G65020.1
Length=1081
Score = 1788 bits (968), Expect = 0.0
Identities = 1046/1084 (96%), Gaps = 3/1084 (0%)
Strand=Plus/Plus
Query 4 GGGGttttttcttttttCTTAATTTCCAAGAATCGTCTCTTTTCTCTCAATCCTCCAATT 63
|||| |||||||||||||||||||||||||||||||||||| ||||| | | ||||||||
Sbjct 1 GGGG-TTTTTCTTTTTTCTTAATTTCCAAGAATCGTCTCTTCTCTCT-ATTTCTCCAATT 58
Query 64 CCCAAATTTCAACAACAAGACGAAGCAAACGATGTGGATTGAAATCATCTGCGGTCTCGT 123
||||||| ||||||| |||| | ||| ||||||||||||||| |||||||||||||||||
Sbjct 59 CCCAAATATCAACAAGAAGAAGCAGC-AACGATGTGGATTGAGATCATCTGCGGTCTCGT 117
Query 124 CATCTACAAACTCGTCCGCCGTTTCTTCTACGACGACGAATTCTCCGACGTCGAAACTTC 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 118 CATCTACAAACTCGTCCGCCGTTTCTTCTACGACGACGAATTCTCCGACGTCGAGACTTC 177
Query 184 CGATTCCACTGCTCTCTTCTCCGTTGCTCACAGACTTGAGAAACTTTATGGTGGAAAAGC 243
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 178 CGATTCCACTGCTCTCTTCTCCGTTGCTCACAGACTTGAGAAACTTTACGGTGGAAAAGC 237
Query 244 TTATGTAGGACTTCGAATTCCAGATGCCGACACTGCTTCTAGACAAGACATTGATGTTGT 303
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 238 TTATGTAGGACTTCGAATTCCAGATGCCGACACTGCTTCTAGACAGGACATTGATGTTGT 297
Query 304 TCTTGTTACTAAAGGAGATGTTGTAGTGATTTCTGTGAAGAATCTATCGGGGATTGTTAC 363
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TCTTGTTACTAAAGGAGAAATTGTAGTGATTTCTGTGAAGAATCTATCGGGGATTGTTAC 357
Query 364 GGTAACTAGTGATGGTAGCTGGGTTTGTGAAGGTGGCAAGCATCATACTACTGAGACTTT 423
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 358 GGTAACTAGTGATGGTAGCTGGGTTTGTGAAGGTGGCAAGCATCATACCACTGAGTCTTT 417
Query 424 CCCTGATCCTCTGGCGGAGGTCAAGAAACAAGCTTCAGTTCTTGAATCATATCTTGAACA 483
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CCCTGATCCTCTGGCCGAGGTCAAGAAACAAGCTTCAGTTCTTGAATCATATCTTGAACA 477
Query 484 GAGGGGAGTTACTTTACTAGAAGGAAATGTGTCTTGCAAAGTTGTCATTCCCAATCCAAG 543
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 478 GAGGGGAGTTACTTTACTAGAAGGAAATCTGTCTTGCAAAGTTGTCATTCCCAATCCAAG 537
Query 544 TTTTCGTACAATTCATGCATTCCCGAGTGAGGTAATTACCTATGAAGATTGGCAACAGCT 603
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 538 TTTTCGTACAATTCATGCATTCCCTAGTGAGGTAATTACCTATGAAGATTGGCAACAGCT 597
Query 604 AAAACCAGTATCAAAAAGTAAAATTTCTGGTTGGGTTAAAGGCGCATTCAGCACCGGAAA 663
||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 598 GAAACCAGCATCAAGAAGTAAATTTTCTGGTTGGGTTAAAGGCGCATTCAGCACAGGAAA 657
Query 664 AGAGATGCAGGAATCTTCGCATCAAAAACTTAATTTCATCCTTGGCACAGCACCAACGTG 723
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 AGAGATGCAGGAATCATCGCATCAAAAACTTAATTTCATCCTTGGCACAGCACCAACGTG 717
Query 724 GGATAGAGTGGAGCTTAAAAGTAGCAAAATTGTGTTAGGGGAATTCCTCGAGTTTAAAGG 783
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 718 GGATAGAGTGGAGCTTAGAAGTAGCAAAATTGTGTTAGGGGAATTCCTTGAGTTTAAAGG 777
Query 784 AAAGCAGGAAGATACCCTGGCTTTAAGAAATATCAAAAGGTCAAAAGTCGACCGTGTCTC 843
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 778 AAAGCAGGAAGATACCCTGGCTTTAAGAAATATCAAAAGATCAAAAGTCGATCGTGTCTC 837
Query 844 TATTCAGAAAACAAGCATGTTTGGATTAGCTCCTTCGAGGTTGCAGGTTCTGTATTCGTA 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TATTCAGAAAACAAGCATGTTTGGATTAGCTCCTTCGAGGTTGCAGGTTCTGTATTCGTA 897
Query 904 TAGGGACTACAGAAGTGAAGGCAGTTCAGGGGCAGAGTCGAAAGAAGTGACTGTCAGGTC 963
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 898 TAGGGACTACAGAAGTGAAGGCAGTTCAGGGGCAGAGTCGAAAGAAGTGACCGTCCGGTC 957
Query 964 GAGCACTGAGGTTCTGTTTCAGCCACGAGACTCCACAAAGATGAAGAAATTCAAGCTATC 1023
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AAGCACTGAGGTTTTGTTTCAGCCACGAGACTCCACAAAGATGAAGAAATTCAAGCTATC 1017
Query 1024 GTCGCTTGTCTCCATTTCACTAAGTGCCTAACTATGAAGTGAGCTTATTAGCATGCAGCA 1083
|||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1018 GTCGCTCGTCTCCATTTCACTAAGTGCCTAACTGTGAAGTGAGCTTATTAGTATGCAGCA 1077
Query 1084 GAGG 1087
||||
Sbjct 1078 GAGG 1081
> Ahg896233 jgi|Araly1|896233|Al_scaffold_0005_199
Length=330
Score = 95.3 bits (51), Expect = 9e-19
Identities = 57/60 (95%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 435 TGGCGGAGGTCAAGAAACAAGCTTCAGTTCTTGAATCATATCTTGAACAGAGGGGAGTTA 494
|||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 88 TGGCTGAGGTCAAGAAACAAGCTTCTGTTCTGGAATCATATCTTGAACAGAGGGGAGTTA 147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46052483736
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5