BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65030.1
Length=1230
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925362 jgi|Araly1|925362|scaffold_200923.1 1714 0.0
> Ahg925362 jgi|Araly1|925362|scaffold_200923.1
Length=1080
Score = 1714 bits (928), Expect = 0.0
Identities = 1026/1073 (96%), Gaps = 8/1073 (1%)
Strand=Plus/Plus
Query 7 GAAACCTCTCACCGAAGCTACAATGAGTATCATCGCAGGCTCCTACGAGAGATTCATTTG 66
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAAACCTCTCATCGAAGCTACAATGAGTATCATCGCAGGCTCCTACGAGAGATTCATTTG 60
Query 67 GGGTTTCAAGCTTAAACCCACGAAGCACGACGCCGA-ATCTCAAACCCTAACTCTCTCCC 125
|||||||| |||||||||||| |||||||||||||| | | |||||||||||||||||||
Sbjct 61 GGGTTTCAGGCTTAAACCCACAAAGCACGACGCCGATAAC-CAAACCCTAACTCTCTCCC 119
Query 126 CTCTCTTCTCCTACCCTTCCCACATCTCCCCAATCACCACCGTCGCTTGTTCCGGTCCCG 185
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CTCTCTTCTCCTACCCATCCCACATCTCCCCAATCACCACCGTCGCTTGTTCCGGTCCCG 179
Query 186 CCGCAGCTTCCGGCGGCTCCGACGATACAATCCACCTCTACGACCTTCCCTCCGCTTCTT 245
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 180 CCGCAGCCTCCGGCGGCTCCGACGATACAATCCACCTCTACGACCTCCCCTCCGCTTCTT 239
Query 246 CCCTCGGCTCTCTCCTTGACCACAATCACGCAGCTTCAATCACCGCTCTCTCCTTCTACA 305
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 240 CCCTCGGCTCTCTCCTTGACCACAATCACGCAGCTTCTATCACTGCTCTCTCCTTCTACA 299
Query 306 CACCTTCTTCACTCTCCTTCCCTCGTAATCTAATCTCCGCCGCCGCAGATGGCTCCGTTG 365
| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 300 CTCCTTCGTCCCTCTCCTTCCCTCGTAATCTAATCTCCGCCGCCGCAGATGGCTCCGTCG 359
Query 366 CTATATTCGATACTGATCCTTTTGTTTTGCTTAAGTCGTTTCGTCCTCATAAGAAAGCGG 425
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CGATATTCGATACCGATCCTTTTGTTTTGCTTAAGTCGTTTCGTCCTCATAAGAAAGCGG 419
Query 426 TTAATGATTTAGCGATTCATCCTTCAGGGAAGCTTGCTTTAGCTGTTTATCGTGATGAGT 485
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 420 TTAATGATTTAGCGATTCATCCTTCAGGGAAACTTGCTTTAGCTGTTTATCGTGATGAGT 479
Query 486 TCTTTGCGATGTTGAATTTAGTTAGAGGAAAGAGGAGTTTTTGTTGTAGGTTAGGTCATG 545
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCTTTGCGATGTTGAATTTGGTTAGAGGAAAGAGGAGTTTTTGTTGTAGGTTAGGTCATG 539
Query 546 AAGCTAGTCTTGTGAAATTTGATCCTAGTGGTGAAAGGTTTTACATGGTTGTGAGTAATA 605
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 540 AAGCTAGTCTTGTGAAATTTGATCCTAGTGGTGAAAGGTTTTTCATGGTTGTGAGTAATA 599
Query 606 AAGTTGGAGTTCATCAGTCTGAAGATGCTAAGCTTCTTCTTGAGCTCGAGAATCCGAGCC 665
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 600 AAGTTGGAGTTCATCAGTCTGAAGATGCTAAGCTTCTTCTCGAGCTCGAGAATCCGAGCC 659
Query 666 GCAAGCGTATTCTCTGTGCTACTCCTGGAGAGAGTGGAACTCTGTTCACAGGTGGTGAGG 725
|||||||||| ||||| ||| |||| |||||||||||||||||||| |||||||||||||
Sbjct 660 GCAAGCGTATACTCTGCGCTGCTCCCGGAGAGAGTGGAACTCTGTTTACAGGTGGTGAGG 719
Query 726 ATCGGGCTATAACAGCTTGGGATACAAATAGTGGGAAGCTTGCATATTCCATAGAAGATG 785
|||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 720 ATCGGGCTATAACAGCTTGGGACACAAATAGCGGGAAGCTTGCTTATTCCATAGAAGATG 779
Query 786 CTCACCCAGCTCGAATCAAAGGTATTGTTGTGCTTACCAGGAATGATAGTGACGGCTCCT 845
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 780 CCCACCCAGCTCGAATCAAAGGTATTGTTGTGCTCACCAGGAATGATAGTGACGGCTCCT 839
Query 846 TGGAAGATCCATACTTGATTGGTTCTGCATCGTCTGAT-G-GG-ATCATACGTGTTTGGG 902
|||||||||||||||||||||||||||||||||||||| | || ||| | | |||||||
Sbjct 840 TGGAAGATCCATACTTGATTGGTTCTGCATCGTCTGATGGCGGAATC--A-GAGTTTGGG 896
Query 903 ACGTGCGAATGGCGGCTAAAGAAAATACAAAACCATTAGCCGAGACAAATACTAAATCAA 962
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 897 ATGTGCGAATGGCGGCTAAAGAGAATACAAAACCATTAGCCGAGACAAATACTAAATCAA 956
Query 963 GGCTTACTTGTCTTGCCGGGTCAGCTCTTAAATCTATGAGACGGCCACAGATTGGAAAGC 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 GGCTTACTTGTCTTGCCGGGTCAGCTCTTAAATCTATGAGACGGCCACAGATTGGAAAGC 1016
Query 1023 AGGAACCTCAGAAGGTAGACGAAGAGCATGAGGACTCAGAATAAGAGCTGATT 1075
|| || |||||||||||||||||| | | ||| ||||||||| ||||||||||
Sbjct 1017 AGCAAGCTCAGAAGGTAGACGAAGGGGACGAGAACTCAGAATGAGAGCTGATT 1069
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45938114985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5