BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65032.1
Length=644
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925363 jgi|Araly1|925363|scaffold_200924.1 490 5e-138
> Ahg925363 jgi|Araly1|925363|scaffold_200924.1
Length=318
Score = 490 bits (265), Expect = 5e-138
Identities = 296/311 (95%), Gaps = 2/311 (1%)
Strand=Plus/Plus
Query 105 TTTTGTTA-AA-GACGAAGCCATGAAGAGTCTGATATGGTTAACAGCAGAAGAGGCTGCA 162
||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTGGTTATAAGGACGAAGCCATGAAGAGTCTGATATGGTTAACAGCAGAAGAGGCTGCA 60
Query 163 AAGAACAGAGGAAAAGTTCTTTCTTTGTATCGACAATTACTTAGGAGCATTAACTCGCCA 222
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 61 AAGAACAGAGGAAAAGTTCTTTCTTTGTATCGACAATTACTTCGGAGCATCAACTCGCCG 120
Query 223 AAATTGCAGCTTAGTTATGCTTCAAGACTTGCGAAGAAAGCTGAGGTTAGGACCATCTTC 282
||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||
Sbjct 121 AAATTGCAGCTTAGTTATGCTGCAAGACTTGCAAAGAAAGCTGAGGTTAAGACCATCTTC 180
Query 283 TTGTTTGGCTCTGAGGAGATTTCGAAACACAATGTCGCTGATCTCATCCGTACTGGTGAA 342
||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 181 TTGTTTGGCTCCGAGGAGATTTCGAAACACAATGTCGCTGATCTCATCCGTACCGCTGAA 240
Query 343 TATGCTCTTTCTCAATTGAAACAAGGCAAAATCCCCAACAACTCTACTCAGTATTGAGTC 402
|||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 241 TATGCTCTTTCTCAGTTGAAACAAGGCAAAATCCCCAACAACACCACTCAGTATTGAGTC 300
Query 403 ATCATTGTCAC 413
|||||||||||
Sbjct 301 ATCATTGTCAC 311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23598085623
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5