BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65040.2
Length=1790
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315468 jgi|Araly1|315468|fgenesh1_pm.C_scaffold_2000501 1397 0.0
> Ahg315468 jgi|Araly1|315468|fgenesh1_pm.C_scaffold_2000501
Length=1467
Score = 1397 bits (756), Expect = 0.0
Identities = 822/854 (96%), Gaps = 4/854 (0%)
Strand=Plus/Plus
Query 670 GTATATGATTCTGGCAACAACAACTGTTTCTATTATTGTGAAGTATGCCTTCTATGTCAC 729
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 615 GTATATGATTCTGGCAACAACAACTGTTTCTATTATTGTAAAGTATGCCTTCTATGTCAC 674
Query 730 TGATATGCTCAAGGAAGGTCAATGGGAAGGAAAACCAGTATACACTTTCTATCTGGAGCT 789
|||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 675 TGATATACTCAAGGAAGGTCAATGGGAAGGGAAACCGGTATACACTTTCTATCTGGAGCT 734
Query 790 TGTTCGTGACTTGCTTCACTTGTCCATGTATCTTTGCTTCTTCCTGATGATATTCATGAA 849
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 735 TGTTCGTGACTTGCTTCACTTGTCCATGTATCTTTGCTTCTTCCTTATGATATTCATGAA 794
Query 850 CTATGGCCTTCCCTTGCATCTAATACGGGAGCTCTACGAAACGTTCAGAAACTTCAAGAT 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 CTATGGCCTTCCCTTGCATCTAATACGGGAGCTCTACGAAACGTTCAGAAACTTCAAGAT 854
Query 910 TCGTGTGACTGATTACCTTC-GATATCGGAAAATCACTTCCAATATGAATGATCGGTTTC 968
|||||||||||||||||| | ||||||| ||||||||||||||||||||||| |||||||
Sbjct 855 TCGTGTGACTGATTACCT-CAGATATCGTAAAATCACTTCCAATATGAATGAACGGTTTC 913
Query 969 CTGATGCAACTCCTGAAGAACTTAGTTCAAATGATGCCACTTGTATCATATGTCGTGAAG 1028
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 914 CTGATGCAACTCCTGAAGAACTTAGTGCAAATGATGCCACTTGTATCATATGTCGTGAAG 973
Query 1029 AAATGACCTCAGCGAAGAAATTAGTATGTGGCCATCTATTTCATGTACATTGTCTTCGGT 1088
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 974 AAATGACCTCAGCGAAGAAATTAGTATGTGGCCATCTATTTCATGTGCATTGTCTGCGGT 1033
Query 1089 CATGGTTGGAACGACAGAACACATGTCCCACTTGCAGAGCACTGGTTGTCCCAGCTGAGA 1148
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1034 CATGGTTGGAACGACAGAACACATGTCCCACCTGCAGAGCACTGGTTGTCCCAGCTGAAA 1093
Query 1149 ATGCTACATCAACAGCTTCTGGAAACCGTGGGCCACACCAAGAATCCCTGCAGCAAGGAA 1208
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1094 ATGCTACATCAACAGCTTCTGGAAACCGTGGACCACACCAAGAATCCCTGCAGCAAGGAA 1153
Query 1209 CCGGTACTTCAAGTTCTGATGGTCAGGGTTCTTCTGTTTCTGCTGCTGCCAGTGAGAATA 1268
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1154 TCGGTACTTCAAGTTCTAATGGTCAGGGTTCTTCTGTTTCTGCTGCTCCCAGTGAGAATA 1213
Query 1269 TGAGCAGGCACGAGGCTAGGTTTCAAGCCGCTGCTTCTGCAGCCTCTATATATGGGAGAT 1328
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1214 TGAGCAGGCACGAGGCTAGGTTTCAAGCTGCTGCTTCTGCAGCCTCTATATATGGGAGAT 1273
Query 1329 CCATTGTTTATCCATCTTCTGCAAACACACTAGTATGGTCTCAAGGTAATTCATTACTTC 1388
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1274 CCGTTGTTTATCCATCTTCTGCAAACACACTAGTATGGTCTCAAGGTTATTCATTGCTTC 1333
Query 1389 CTCAGACGGAGGTAGAAGCTCAAAGAAGATTTCTTGAGTCCCAAATCGAGGTGTTAACGA 1448
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1334 CTCAGACGGAGTTAGAAGCTCAAAGAAGATTTCTTGAGTCCCAAATCGAGGTGTTA-CAA 1392
Query 1449 A-CCAACTTCGGCTTTTGGAGAAACCGACAACTGTAGATACGAAAGGAAAGTCCGTTGCG 1507
| ||||||||||||| ||||||| ||| ||||||||||||||||||||||||| ||||||
Sbjct 1393 AACCAACTTCGGCTTCTGGAGAAGCCGGCAACTGTAGATACGAAAGGAAAGTCAGTTGCG 1452
Query 1508 GATACTGCATAGTG 1521
|| |||||| ||||
Sbjct 1453 GAAACTGCAGAGTG 1466
Score = 798 bits (432), Expect = 0.0
Identities = 502/536 (94%), Gaps = 4/536 (1%)
Strand=Plus/Plus
Query 137 ATGATTCAGCTAAAGGTTTACGCGGGTCTGAGTACTCTCGCGACATTGGTTGTGATATAT 196
||||||||||||| ||||||||| ||||| |||||||| ||| ||||||||||||| |||
Sbjct 1 ATGATTCAGCTAAGGGTTTACGCTGGTCTAAGTACTCTTGCGGCATTGGTTGTGATTTAT 60
Query 197 CATGCTTTTAGTAGCAGAGGTCAATTTTACCCAGCGACTGTGTATCTATCAACGTCTAAG 256
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 CATGCTTTTAGTAGCAGAGGTCAATTTTACCCAGCGACTGTGTATCTATCAACGTCCAAG 120
Query 257 ATCAATTTGGTAGTTCTTTTGAACATGGGTTTGGTATTAATGTTGAGTTTATGGAATCTT 316
||||||||||| ||||||||||||||||||||||| |||||| | |||||||||||||||
Sbjct 121 ATCAATTTGGTGGTTCTTTTGAACATGGGTTTGGTCTTAATGCTCAGTTTATGGAATCTT 180
Query 317 GTCAAAATTGTGTTTTTGGGTTCTCTTAGAGAAGCTGAAGTTGAGCGTTTGAATGAGCAA 376
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTCAAAATTGTGTTTCTGGGTTCTCTTAGAGAAGCTGAAGTTGAGCGTTTGAATGAGCAA 240
Query 377 GCTTGGAGAGAACTGATGGAGATTCTCTTTGCTATTACTATTTTTAGACAAGATTTCTCT 436
|||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 241 GCTTGGAGAGAACTCATGGAGATTCTCTTTGCTATTACTATTTTTAGACAGGACTTCTCT 300
Query 437 GTTGGGTTTATCTCTTTGGTTGTGACTCTTTTGTTGATTAAGGGTTTGCATTGGATGGCT 496
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 301 GTTGGTTTTATCTCTTTGGTTGTGACTCTTTTGTTGATCAAGGGTTTGCATTGGATGGCT 360
Query 497 CAAAAGAGAGTGGAGTATATTGAGACTACTCCTTCTGTGACTTTGCTCTCTCATGTCCGT 556
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 CAGAAGAGAGTGGAGTATATTGAGACTACTCCTTCTGTGACTTTGCTCTCTCATGTTCGT 420
Query 557 ATAGTTTCTTTTATGGT-TTTCCTCCTTA-TCTTAGATTGTCTCCTTACGTATAGTTCTA 614
|| ||||| ||| |||| |||| | || |||||||| |||| ||||||||||||||||
Sbjct 421 ATTGTTTCGTTTCTGGTGTTTCTT--TTGCTCTTAGATGGTCTTCTTACGTATAGTTCTA 478
Query 615 TACAGCAATTGATTCAGTCACGTAAAGCTTCAATGTCAGTCTTCTTCACGTTTGAG 670
||| ||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 479 TACGGCAATTGATTCAGTCCCGGAAGGCTTCAATGTCAGTCTTCTTCACGTTTGAG 534
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67191192180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5