BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65070.2
Length=2845
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907778 jgi|Araly1|907778|Al_scaffold_0002_859 3692 0.0
> Ahg907778 jgi|Araly1|907778|Al_scaffold_0002_859
Length=2676
Score = 3692 bits (1999), Expect = 0.0
Identities = 2413/2609 (92%), Gaps = 43/2609 (2%)
Strand=Plus/Plus
Query 121 TCACGCGCCGCCTCACCGTCATCATTACGCGTCGCTTCTCCGTTAATTATACGCGCCGCC 180
||||||||| |||||| ||| || |||||||||||||||||||||||| |||||||||||
Sbjct 79 TCACGCGCCTCCTCACTGTCTTCTTTACGCGTCGCTTCTCCGTTAATTCTACGCGCCGCC 138
Query 181 TCCTCAGACGACTCACAGTCAGTCGAAAACCAAACTCTAGAAGTCCTCGAATGGCGTGCC 240
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 139 TCCTCAGACGACTCACAGTCAGTCGAAAACCAAACTCTAGAGGTCCTCGAATGGCGTGCT 198
Query 241 CTCTGCAATCAGCTCTCTCCGTTCGCTTCCACAACCATGGGCCTTTCCGCCACCAAAAAC 300
||||||||||||||| |||| ||||| |||||||||||||| ||||||||||||||||||
Sbjct 199 CTCTGCAATCAGCTCGCTCCATTCGCCTCCACAACCATGGGACTTTCCGCCACCAAAAAC 258
Query 301 GCCGAAATTCCGGTGGGAAACTCGCCGGAAGAAAGCAGGAATCTCCTTAACGAGACCTCA 360
|||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||| |
Sbjct 259 GCCGAAATTCCGGTGGGAAATTCGCCGGAAGAGAGCAGGAATCTCCTTGACGAGACGGCG 318
Query 361 GCTGCATTAGCTGCTATGGAGATGATGAAATCGCGAG-GATTAGGTCTTTCTGAAATCCA 419
||||| ||||| |||||||||| |||| |||||| || |||||||||||||||| |||||
Sbjct 319 GCTGCGTTAGCAGCTATGGAGAAGATGGAATCGC-AGCGATTAGGTCTTTCTGAGATCCA 377
Query 420 AGACTTGTCTGATATCGTTGAGCGTGCTGTGTCCGGTCAATTGCTTACCGTTAGAGAACT 479
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 378 AGACTTGTCTGATATCGTTGAGCGTGCTGTGGCCGGTCAATTGCTTACCGTTAGAGAGCT 437
Query 480 CTG-TACCGTTCGAAGCACGTTAACGGCTGCTACATCAACGTTTCAGAAACTCCGAAAAG 538
||| | | |||||||||||||||| ||| ||||||||| ||||||||||||||||||||
Sbjct 438 CTGCT-CTGTTCGAAGCACGTTAATGGCGGCTACATCAGTGTTTCAGAAACTCCGAAAAG 496
Query 539 CAGCCATTAGTGATAACAGGGTTACTCCACTTGTAGATATACTACAGGGTTGTGATTTCA 598
|||||||||||||||| ||||||||||||||||||| | || | ||||||||||||||||
Sbjct 497 CAGCCATTAGTGATAAGAGGGTTACTCCACTTGTAGGTTTAGTTCAGGGTTGTGATTTCA 556
Query 599 AGGATACATTACAGCAGAAGATTAGTTTTTGTATAGACTGCAACATGACTATGATTCTTG 658
|||||||||| |||||||||||| | |||||||| |||||||||||| ||||||||||||
Sbjct 557 AGGATACATTGCAGCAGAAGATTGGATTTTGTATCGACTGCAACATGTCTATGATTCTTG 616
Query 659 ATAGAGCTAGTGAAGATTTAGAGATTATAAGATCTGAACGGAGGAGAAACATGGAGAATT 718
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 617 ATAGAGCTAGTGAAGATTTAGAGATTATAAGATCTGAACGGAGGAGAAACATGGAGAAAT 676
Query 719 TGGATTCTCTTTTGAAGAAAATATCAACTAAGATTTTTCTA-GCTGGGGGGATTAACAAG 777
||||||||||||||||| | ||||||||| ||||||||| | |||||||||||| | | |
Sbjct 677 TGGATTCTCTTTTGAAGCAGATATCAACTCAGATTTTTC-AGGCTGGGGGGATTGATAGG 735
Query 778 CCTTTGATAACGCAGAGGAGATCAAGGATGTGTGTAGCTATTAGAGCTACACACAAAAGT 837
|| |||||||||||| | ||||||||||||||||||||||||||||| || |||||||||
Sbjct 736 CCCTTGATAACGCAGCGCAGATCAAGGATGTGTGTAGCTATTAGAGCGACGCACAAAAGT 795
Query 838 TTACTTCCAGGTGGTGTTGTTTTAAGTGTTAGTAGCTCTAGGGCAACATGCTTTATAGAA 897
|||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||
Sbjct 796 TTACTTCCAGGTGGTGTTGTTTTAAGTGTTAGTAGCTCAAGGGCAACGTGCTATATAGAA 855
Query 898 CCGAAAGAGGCAGTGGAGCTTAATAATATGGAAGTGAGACATGCGAACTCCGAGAAAGCT 957
|||||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||
Sbjct 856 CCGAAAGAGGCAGTGGAGCTTAATAACATGGAAGTGAGGCATGCAAACTCGGAGAAAGCT 915
Query 958 GAGGAAATGGCGATTTTGAGCATTTTGACATCTGAGGTGGT-GATGGCGCAG-AGAGAGA 1015
||||||||||| ||||||||||||||||||||||| || || | ||||||| || || |
Sbjct 916 GAGGAAATGGCAATTTTGAGCATTTTGACATCTGAAGT-GTCAACGGCGCAGAAG-GATA 973
Query 1016 TATTGCATTTGTTGGATAGAATATTAGAACTTGACATTGCTTTTGCAAGAGCATCACATG 1075
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 974 TATTGCATTTGTTGGATAGAATACTAGAACTTGACATTGCTTTTGCAAGAGCATCTCATG 1033
Query 1076 CAAATTGGATTAATGGTGTCTATCCCAACGTAACTTCAGAACACACAAAAACA-C----- 1129
|||| ||||| |||||||||||||| |||||||||||||||||||| |||||| |
Sbjct 1034 CAAAATGGATGAATGGTGTCTATCCTAACGTAACTTCAGAACACACTAAAACAGCGGGTT 1093
Query 1130 ----CGG-G---------C-TTAGCTGTAGACATTGATTCTGCGCAGCACCCGCTACTTC 1174
|| | | ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1094 TGGGTGGAGACCATAAATCATTATCTGTAGACATTGATTCTGCGCAGCACCCGCTACTTC 1153
Query 1175 TTGGTTCAGTATTAGGCAGCCCAAATGGTGGAGACA-TTTTCCCTGTGCCAGTAGACATT 1233
||||||||||||||||||||||||||| |||| | |||| ||||||||| ||||||||
Sbjct 1154 TTGGTTCAGTATTAGGCAGCCCAAATGATGGA-ATGGTTTTTCCTGTGCCAATAGACATT 1212
Query 1234 AAAGTTGAAAGCAGTGCCAAAGTAGTCGTCATCTCGGGTCCAAACACAGGAGGAAAGACC 1293
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 AAAGTTGAAAGCAGAGCCAAAGTAGTCGTCATCTCGGGTCCAAACACAGGAGGAAAGACT 1272
Query 1294 GCTTTGTTAAAGACATTGGGATTATTGTCTCTTATGTCCAAGTCCGGGATGTATTTGCCT 1353
||||| |||||||||||||||||| | ||||||||||||||||| |||||||||||||||
Sbjct 1273 GCTTTATTAAAGACATTGGGATTAATATCTCTTATGTCCAAGTCGGGGATGTATTTGCCT 1332
Query 1354 GCTAAGAACTGCCCAAGGTTGCCTTGGTTTGATCTTATTCTGGCTGACATTGGAGATCCT 1413
|||||||| |||||||||||||||||||||||| |||||||||| || || || |||||
Sbjct 1333 GCTAAGAATTGCCCAAGGTTGCCTTGGTTTGATTTTATTCTGGCAGATATCGGGGATCCG 1392
Query 1414 CAGTCTTTGGAGCAAAGTCTTTCAACCTTTAGTGGCCACATCTCACGGATACGACAGATA 1473
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1393 CAGTCTTTGGAGCAAAGTCTCTCAACCTTTAGTGGCCACATCTCACGGATACGTCAGATA 1452
Query 1474 CTTGACATTGCTTCAGAAAATTCACTTGTCTTACTAGACGAAATATGTAGTGGAACTGAT 1533
||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||
Sbjct 1453 CTTGACATTGCTTCAGAAAATTCGCTTGTCCTACTAGACGAAATTTGTAGTGGAACTGAT 1512
Query 1534 CCTTCAGAAGGGGTTGCACTTGCTACTAGCATCCTACAGTATATTAAAAACCGTGTTAAT 1593
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1513 CCTTCAGAAGGGGTTGCACTTGCTACTAGTATCCTACAATATATTAAAAACCGTGTTAAT 1572
Query 1594 GTGGCAGTTGTATCAACACATTACGGTGACTTAAGTCGCTTGAAGGATAATGAACCTCGA 1653
||||| ||||| ||||||||||||||||||||||||||| ||||||||||||| |||| |
Sbjct 1573 GTGGCTGTTGTGTCAACACATTACGGTGACTTAAGTCGCCTGAAGGATAATGAGCCTCAA 1632
Query 1654 TTCCAAAATGCTGCAATGGAGTTCTCCATGGAAACTTTGCAGCCTACATTTCGAGTACTC 1713
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1633 TTCCAAAATGCTGCAATGGAGTTCTCCATGGAAACTTTGCAGCCTACATTCCGAGTACTC 1692
Query 1714 TGGGGAAGTACTGGTCTATCAAATGCATTGAGAGTAGCTAAGTCCATTGGTTTCAATAAA 1773
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1693 TGGGGAAGTACTGGTCTATCAAATGCATTGACAGTAGCTAAGTCCATTGGTTTCAATACA 1752
Query 1774 AGAATATTAGAGAATGCGCATAAGTGGACGGAGAAATTGAATCCCGAGCAGGATGTAGAG 1833
|||||||||||||||| ||||| ||||| |||||||| ||||| |||||||||||||||
Sbjct 1753 GGAATATTAGAGAATGCACATAAATGGACAGAGAAATTAAATCCGGAGCAGGATGTAGAG 1812
Query 1834 CGGAAAGGCTCACTCTTTCAGTCCCTTATGGAAGAAAGAAATAAACTAAAGCTTCAGGCA 1893
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1813 CGGAAAGGCTCACTCTTTCAGTCCCTTGTGGAAGAAAGAAATAAGCTAAAGCTTCAGGCA 1872
Query 1894 ACTAAGACTGCAGCTTTTCATAGAGACTTAATGAACCTTTACCACGAGCTTGAGCATGAG 1953
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1873 TCTAAGACTGAAGCTTTTCATAGAGACTTAATGAACCTTTACCACGAGCTTGAGCATGAG 1932
Query 1954 TCGCATGATCTTGATAAACGTGAGAGGGCTCTTCTGAAAAAAGAAACGCAAAAGGTGCAA 2013
|||||||||||||| ||||||||||||||||||||||| ||||| || |||||||| |||
Sbjct 1933 TCGCATGATCTTGAAAAACGTGAGAGGGCTCTTCTGAAGAAAGAGACCCAAAAGGTACAA 1992
Query 2014 GAAGATCTAAACTCTGCTAAGTC-AAAGATGGAGAGACTGGTGGCTGAATTTGAAAGTCA 2072
|||||||| |||||||||||||| ||| ||| ||| ||||||||||||||| |||||||
Sbjct 1993 GAAGATCTGAACTCTGCTAAGTCGAAA-ATGCAGAAACTGGTGGCTGAATTCAAAAGTCA 2051
Query 2073 ACTAGAAATCACTCAAGCTGATCAATACAATTCCTTAATCCTGAAAACCGAAGAGGCAGT 2132
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2052 ACTAGAAATCGCTCAAGCTGATCAATACAATTCCTTAATTCTGAAAACCGAAGAGGCAGT 2111
Query 2133 TGCAGAGATTATTGAAGCTTGCTGTCCTATGGATCCTGATTCC-TTAGAAGAAGAATACA 2191
|||||||||||||||||||||||||||| | |||||||||||| || |||||| ||||
Sbjct 2112 TGCAGAGATTATTGAAGCTTGCTGTCCTGTCGATCCTGATTCCATT-GAAGAACCGTACA 2170
Query 2192 GTGACTACTCACCACAAGCTGGTGAAAAAGTTCTTGTAACTGGACTGGGAGATAAGTTAG 2251
| |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 2171 GAGACTACTCGCCACAAGCAGGTGAAAAAGTTCTTGTAACTGGACTTGGAGATAAGTTAG 2230
Query 2252 GTACTGTGGTTGAAGAACCTGGAGATGATGATGATACAGTTCTAGTCCAGCATGGTAAGA 2311
||||||| || |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 2231 GTACTGTTGTGGAAGAACCTGGAGATGATGA-GA--CAGTTCTAGTCCAGCATGGTAAGA 2287
Query 2312 TAAGAGTACGCATAAAGAAAAAGGACATAAAGCCCCTTCCTCGTAGCACAAGTAGCCAAA 2371
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2288 TAAGAGTACGTATAAAGAAAAAGGACATAAAGCCCCTTCCTCGTAGCACAAGTAGCCAAA 2347
Query 2372 CATCCAATCGTTCTCTACGTTCGAAGAGACAGATAAACATGAAAGAGCTAGGCAGTGTGT 2431
|||||||||||||| ||| ||| ||||||||| |||||||||||||||||||||||||||
Sbjct 2348 CATCCAATCGTTCTATACATTCAAAGAGACAGGTAAACATGAAAGAGCTAGGCAGTGTGT 2407
Query 2432 TGCAAATGCA--A-AGCGAACCAGTGCGGATTCAAACGTCAAAGAACACATTGGATCTAA 2488
|||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2408 TGCAGATGCAGCAGAGCGAACCAGTGCGGATTCAAACGTCAAAGAACACATTGGATCTAA 2467
Query 2489 GAGGAATGCGGGCGGAAGAAGCGGTTCACCAGCTAGACATGGCCATCTCGGGAAGAGACT 2548
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2468 GAGGAATGCGGGCAGAAGAAGCGGTTCACCAGCTAGACATGGCCATATCGGGAAGAGACT 2527
Query 2549 CGGGCTCGATCCTATTTATTATTCATGGAATGGGGGCAGGCATTATAAAGGAGCTAGTGC 2608
||||||||||||| ||||| ||||||||||||||| |||| ||||||||||||| ||||
Sbjct 2528 CGGGCTCGATCCTCTTTATCATTCATGGAATGGGGACAGGGGTTATAAAGGAGCTGGTGC 2587
Query 2609 TTGAGAGGTTAAGAAAGAACACTCGTGTCTCAAGGTATGAACAGGCAAATCCTATGAACC 2668
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2588 TTGAGAGGTTAAGAAAGCACACTCGTGTCTCAAGGTATGAACAGGCAAATCTTATGAACC 2647
Query 2669 ATGGATGTACAGTTGCTTACATTAAATGA 2697
|||||||||||||||||||||||||||||
Sbjct 2648 ATGGATGTACAGTTGCTTACATTAAATGA 2676
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107376400655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5