BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G65080.1 Length=1757 Score E Sequences producing significant alignments: (Bits) Value Ahg475515 jgi|Araly1|475515|fgenesh2_kg.2__645__AT1G65080.1 2414 0.0 > Ahg475515 jgi|Araly1|475515|fgenesh2_kg.2__645__AT1G65080.1 Length=1681 Score = 2414 bits (1307), Expect = 0.0 Identities = 1578/1705 (93%), Gaps = 33/1705 (2%) Strand=Plus/Plus Query 37 AATGGCAGTGTGGAGGAGTTGTTTACGCGCCTCCTCCT-CTCGT-CAC-CGTTTAtc-tt 92 ||||||||||||||||| |||||||||||||||||||| ||| | | | || | | | || Sbjct 1 AATGGCAGTGTGGAGGACTTGTTTACGCGCCTCCTCCTCCTCCTCCTCTCG-TCACCGTT 59 Query 93 ctctcttcttctcccaccacctcaaaccctcctccttcatctcccattctcctcctctct 152 ||||| | |||| || ||| || ||||| ||||||| || |||||||||||| Sbjct 60 -TCTCTAC-TCTCTTTCC-CCT------CTTCTCCTCCATCTCCAATCCTCCTCCTCTCT 110 Query 153 tctctccctcgccgtcaccatctccgacgtgtttctctcctctccACCGATTAC-TCTCT 211 |||||||||||||||||||||| ||| |||||||| | ||||||| |||||| | ||||| Sbjct 111 TCTCTCCCTCGCCGTCACCATCGCCGCCGTGTTTCCCCCCTCTCCGCCGATT-CATCTCT 169 Query 212 TCTGGACCAGAATTCCCAATTGGGTCTCAAGAAATC---ATCCCTACCGATGATTCTTCT 268 ||| |||||||||||||| |||||||||||| ||||||| |||||| |||||| Sbjct 170 TCTTCCCCAGAATTCCCAATCATTTCTCAAGAAATCATAATCCCTAACGATGACTCTTCT 229 Query 269 TTACCTGTTCTCGCCGTCGTTGATTTCCTCGAAGGCTTTCATGAATTCACAGGATTGCCT 328 |||||||||||| |||||||||||| ||||| || |||||||||||||||||||||||| Sbjct 230 TTACCTGTTCTCTTCGTCGTTGATTTTCTCGACGGGTTTCATGAATTCACAGGATTGCCT 289 Query 329 TGGTGGATGATTATTGCATCTTCTACTGTTGCTGTTAGATTAGCTTTATTGCCTTTACTC 388 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 290 TGGTGGATGATTATTGCATCTTCTACTGTTGCTGTTAGATTAGCTTTATTGCCTTTACTC 349 Query 389 ATACTTCAACTCAAGAAATTGAAGACCATTTCAGAGCTGCTACCGAAGTTGCCTATGCCG 448 |||||||||||||||||||||||||||||||| ||| || |||| |||||||||||||| Sbjct 350 ATACTTCAACTCAAGAAATTGAAGACCATTTCTGAGTTGTTACCTCAGTTGCCTATGCCG 409 Query 449 ATCCCAGAGACTCCAACGTTGAAAGGATCTATTGACCAGTTTTCTCATTTTCTTAAAGAG 508 |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 410 ATCCCAGAGACTCCTACGTTGAAAGGATCTATTGACCAATTTTCTCATTTTCTTAAAGAG 469 Query 509 AGTCGAGCAATTGGGTGCCCCTCCTTTTTGTGGTTCTTCCCATACTTATCTGTCCAGCTC 568 |||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 470 AGTCGAGCTATTGGGTGTCCCTCCTTTTTGTGGTTCTTCCCATACTTATCGGTCCAGCTC 529 Query 569 CCATGCTTTTTCTTGTTGATGGCTAGCATCCGGAAGATGTCACTAGATGGTCACCCTGGC 628 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 530 CCATGCTTTTTCTTGTTGATGGCTAGCATCCGGAAGATGTCACTAGATGGTCACCCTGGC 589 Query 629 TTTGATTCTGGTGGTGTCTTATGGTTCCAGAACTTGAGTGATCTTCCTGGTGGCTCTTTT 688 |||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||| Sbjct 590 TTTGATTCTGGTGGTGCCTTATGGTTCCAGAATTTGAGTGATCTTCCTGTTGGCTCTTTT 649 Query 689 GGACCAGTCTTCCCAATTTTAATTGCTACCTTCCATTACATTAATATACAGATTTCTTTT 748 ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 650 GGACCAGTCTTTCCAATTTTAATTGCTGCCTTCCATTACATTAATATACAGATTTCTTTT 709 Query 749 GATACATCCACAATTCGTCAAACTACCGGCTTGACTGGGCTGCTCATGAGATATTACAAG 808 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 710 GATACATCCACAATTCGTCAAACTACCGGCTTGACCGGGCTGCTCATGAGATATTACAAG 769 Query 809 TTATATCTGGAGATCTTAAGCGTTCCTCTGTTTTTTGTTGGCTATGCTATTCCACAGGGA 868 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 770 TTATATCTGGAGATCTTAAGTGTTCCTCTGTTTTTTGTTGGCTATGCTATTCCACAGGGA 829 Query 869 AGTCTTGTCTACTGGGTAACCAACAGCTCAGTAAATATCTTTCAGCAATTATCTCTCAAG 928 ||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 830 AGTCTTGTCTATTGGGTAACCAACAGCTCAGTTAATATATTTCAGCAATTATCTCTCAAG 889 Query 929 CACCCTACTGTAGGAGCAAAACTTGGTTTACTGAGTCAGGGGGCCACTCCAGGCATGGGA 988 || ||||| ||||||||||||||||||||||||||||| |||||| ||||| || | | | Sbjct 890 CATCCTACGGTAGGAGCAAAACTTGGTTTACTGAGTCAAGGGGCCTCTCCAAGCGTTGAA 949 Query 989 CATTCCATGGAGATCAGCGAATCTGTGATCAAGTATGTGGACTCTGACTCAAAAGAACAG 1048 ||||||||||||||||| ||||| ||||||||||||||||| ||||||| |||||| || Sbjct 950 CATTCCATGGAGATCAGTGAATCCGTGATCAAGTATGTGGATTCTGACTTAAAAGAGCAT 1009 Query 1049 ACCCTTTCTCTACAGACTCTAACACCAGAAGAACTTCTTTCTCTTTCAGTTCAGGTCTTG 1108 |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| Sbjct 1010 ACCCTTTCTCTACAGACTTTAACACCAGAAGAACTTCTTTCTCTCTCAGTTCAGGTCTTG 1069 Query 1109 TCCAAAGGTGATAAAGAAACATCCATTCAGTTGCTTCGATTAGCTCTTGAAAAGGATCCT 1168 | |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1070 GCAAAAGATGATAAAGAAACATCCATTCAGTTGCTTCGGTTAGCTCTTGAAAAGGATCCT 1129 Query 1169 GGATATGTAAGAGGTTTGGTTCTCATGGGGCAGGCGTTGTTACAGAAGAC-GCAGTTGTC 1227 ||||||||||||||||||||||||||||||||||| ||||| |||||||| | ||||||| Sbjct 1130 GGATATGTAAGAGGTTTGGTTCTCATGGGGCAGGCTTTGTTGCAGAAGACAG-AGTTGTC 1188 Query 1228 AGAAGCTACTGAATATTTAGAGCTTGCTATCTCCAAGCTCCTTGATGAGGATCCATCTGA 1287 |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1189 AGAAGCTACTAAATATTTAGAGCTTGCTATCTCCAAGCTTCTTGATGAGGATCCATCTGA 1248 Query 1288 TGCTGAGGATGTTGAACTTTTAATGCTTGCATCTCAGTGGGCTGGTGCTGCATACGTACA 1347 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1249 TGCTGAGGATGTTGAACTTTTAATGCTTGCGTCTCAGTGGGCTGGTGCTGCATACGTACA 1308 Query 1348 ACAGGGAAAACTGAAAAGCGGAATCATACACTTGGAAAGAGTAGCGAAACTGAGAGAACC 1407 |||||||||| ||||||||||||||| |||||||||||||||||| ||||||| |||||| Sbjct 1309 ACAGGGAAAAATGAAAAGCGGAATCACACACTTGGAAAGAGTAGCAAAACTGAAAGAACC 1368 Query 1408 TGGTGATCCTAAAAGCAAAGAGCATTACTTTGAGGCATTGCTGCTTCTTTCAAGCGCTTT 1467 |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1369 CGGTGATCCGAAAAGCAAAGAGCATTACTTTGAGGCATTGCTGCTTCTTTCAAGTGCTTT 1428 Query 1468 GTACAAAGAAGGGCAGAGTGATGAAGCTGCAAAGATTTTACGAGTAGTAGTGGATCACAA 1527 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1429 GTACAAAGAAGGGCAGAGTGATGAAGCCGCAAAGATTTTACGAGTAGTAGTGGATCACAA 1488 Query 1528 TCCGGCGTACAAGCCTCTGCTGGAACAGTGTGAAGATGAGAATGAGCTAGTTAGCGATCT 1587 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1489 TCCGGCGTACAAGCCTCTGCTGGAACAGTGTGAAGATGAGAATGAGCTGGTTAGCGATCT 1548 Query 1588 TGTCAGTCGCAGAAAGGATCATTTCTGATTTTCTCCACGTGTGCAAACCGCATTGTAAGT 1647 |||||||||||| ||||||||||||||||||||||||| || |||||||| Sbjct 1549 TGTCAGTCGCAGGAAGGATCATTTCTGATTTTCTCCAC-----CA-------TTGTAAGT 1596 Query 1648 ATTTGAATACTACGAGAGCGTTCAACTTTCAATAGTTCATAACCTTGTAGGTTAGTAATA 1707 || ||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||| Sbjct 1597 ATCTGAATACAACGAGAGCGTTCATCTTTCAAAAGTTCATAACCTTGTAGGTTAGTAATA 1656 Query 1708 CTGTAAATGTGTAATCCCATTGATG 1732 ||||||||| |||||| ||||||| Sbjct 1657 GTGTAAATGTATAATCCAATTGATG 1681 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65934214095 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5