BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65080.1
Length=1757
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475515 jgi|Araly1|475515|fgenesh2_kg.2__645__AT1G65080.1 2414 0.0
> Ahg475515 jgi|Araly1|475515|fgenesh2_kg.2__645__AT1G65080.1
Length=1681
Score = 2414 bits (1307), Expect = 0.0
Identities = 1578/1705 (93%), Gaps = 33/1705 (2%)
Strand=Plus/Plus
Query 37 AATGGCAGTGTGGAGGAGTTGTTTACGCGCCTCCTCCT-CTCGT-CAC-CGTTTAtc-tt 92
||||||||||||||||| |||||||||||||||||||| ||| | | | || | | | ||
Sbjct 1 AATGGCAGTGTGGAGGACTTGTTTACGCGCCTCCTCCTCCTCCTCCTCTCG-TCACCGTT 59
Query 93 ctctcttcttctcccaccacctcaaaccctcctccttcatctcccattctcctcctctct 152
||||| | |||| || ||| || ||||| ||||||| || ||||||||||||
Sbjct 60 -TCTCTAC-TCTCTTTCC-CCT------CTTCTCCTCCATCTCCAATCCTCCTCCTCTCT 110
Query 153 tctctccctcgccgtcaccatctccgacgtgtttctctcctctccACCGATTAC-TCTCT 211
|||||||||||||||||||||| ||| |||||||| | ||||||| |||||| | |||||
Sbjct 111 TCTCTCCCTCGCCGTCACCATCGCCGCCGTGTTTCCCCCCTCTCCGCCGATT-CATCTCT 169
Query 212 TCTGGACCAGAATTCCCAATTGGGTCTCAAGAAATC---ATCCCTACCGATGATTCTTCT 268
||| |||||||||||||| |||||||||||| ||||||| |||||| ||||||
Sbjct 170 TCTTCCCCAGAATTCCCAATCATTTCTCAAGAAATCATAATCCCTAACGATGACTCTTCT 229
Query 269 TTACCTGTTCTCGCCGTCGTTGATTTCCTCGAAGGCTTTCATGAATTCACAGGATTGCCT 328
|||||||||||| |||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 230 TTACCTGTTCTCTTCGTCGTTGATTTTCTCGACGGGTTTCATGAATTCACAGGATTGCCT 289
Query 329 TGGTGGATGATTATTGCATCTTCTACTGTTGCTGTTAGATTAGCTTTATTGCCTTTACTC 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 TGGTGGATGATTATTGCATCTTCTACTGTTGCTGTTAGATTAGCTTTATTGCCTTTACTC 349
Query 389 ATACTTCAACTCAAGAAATTGAAGACCATTTCAGAGCTGCTACCGAAGTTGCCTATGCCG 448
|||||||||||||||||||||||||||||||| ||| || |||| ||||||||||||||
Sbjct 350 ATACTTCAACTCAAGAAATTGAAGACCATTTCTGAGTTGTTACCTCAGTTGCCTATGCCG 409
Query 449 ATCCCAGAGACTCCAACGTTGAAAGGATCTATTGACCAGTTTTCTCATTTTCTTAAAGAG 508
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 410 ATCCCAGAGACTCCTACGTTGAAAGGATCTATTGACCAATTTTCTCATTTTCTTAAAGAG 469
Query 509 AGTCGAGCAATTGGGTGCCCCTCCTTTTTGTGGTTCTTCCCATACTTATCTGTCCAGCTC 568
|||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 470 AGTCGAGCTATTGGGTGTCCCTCCTTTTTGTGGTTCTTCCCATACTTATCGGTCCAGCTC 529
Query 569 CCATGCTTTTTCTTGTTGATGGCTAGCATCCGGAAGATGTCACTAGATGGTCACCCTGGC 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 CCATGCTTTTTCTTGTTGATGGCTAGCATCCGGAAGATGTCACTAGATGGTCACCCTGGC 589
Query 629 TTTGATTCTGGTGGTGTCTTATGGTTCCAGAACTTGAGTGATCTTCCTGGTGGCTCTTTT 688
|||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 590 TTTGATTCTGGTGGTGCCTTATGGTTCCAGAATTTGAGTGATCTTCCTGTTGGCTCTTTT 649
Query 689 GGACCAGTCTTCCCAATTTTAATTGCTACCTTCCATTACATTAATATACAGATTTCTTTT 748
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 650 GGACCAGTCTTTCCAATTTTAATTGCTGCCTTCCATTACATTAATATACAGATTTCTTTT 709
Query 749 GATACATCCACAATTCGTCAAACTACCGGCTTGACTGGGCTGCTCATGAGATATTACAAG 808
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 710 GATACATCCACAATTCGTCAAACTACCGGCTTGACCGGGCTGCTCATGAGATATTACAAG 769
Query 809 TTATATCTGGAGATCTTAAGCGTTCCTCTGTTTTTTGTTGGCTATGCTATTCCACAGGGA 868
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 770 TTATATCTGGAGATCTTAAGTGTTCCTCTGTTTTTTGTTGGCTATGCTATTCCACAGGGA 829
Query 869 AGTCTTGTCTACTGGGTAACCAACAGCTCAGTAAATATCTTTCAGCAATTATCTCTCAAG 928
||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 830 AGTCTTGTCTATTGGGTAACCAACAGCTCAGTTAATATATTTCAGCAATTATCTCTCAAG 889
Query 929 CACCCTACTGTAGGAGCAAAACTTGGTTTACTGAGTCAGGGGGCCACTCCAGGCATGGGA 988
|| ||||| ||||||||||||||||||||||||||||| |||||| ||||| || | | |
Sbjct 890 CATCCTACGGTAGGAGCAAAACTTGGTTTACTGAGTCAAGGGGCCTCTCCAAGCGTTGAA 949
Query 989 CATTCCATGGAGATCAGCGAATCTGTGATCAAGTATGTGGACTCTGACTCAAAAGAACAG 1048
||||||||||||||||| ||||| ||||||||||||||||| ||||||| |||||| ||
Sbjct 950 CATTCCATGGAGATCAGTGAATCCGTGATCAAGTATGTGGATTCTGACTTAAAAGAGCAT 1009
Query 1049 ACCCTTTCTCTACAGACTCTAACACCAGAAGAACTTCTTTCTCTTTCAGTTCAGGTCTTG 1108
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1010 ACCCTTTCTCTACAGACTTTAACACCAGAAGAACTTCTTTCTCTCTCAGTTCAGGTCTTG 1069
Query 1109 TCCAAAGGTGATAAAGAAACATCCATTCAGTTGCTTCGATTAGCTCTTGAAAAGGATCCT 1168
| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1070 GCAAAAGATGATAAAGAAACATCCATTCAGTTGCTTCGGTTAGCTCTTGAAAAGGATCCT 1129
Query 1169 GGATATGTAAGAGGTTTGGTTCTCATGGGGCAGGCGTTGTTACAGAAGAC-GCAGTTGTC 1227
||||||||||||||||||||||||||||||||||| ||||| |||||||| | |||||||
Sbjct 1130 GGATATGTAAGAGGTTTGGTTCTCATGGGGCAGGCTTTGTTGCAGAAGACAG-AGTTGTC 1188
Query 1228 AGAAGCTACTGAATATTTAGAGCTTGCTATCTCCAAGCTCCTTGATGAGGATCCATCTGA 1287
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1189 AGAAGCTACTAAATATTTAGAGCTTGCTATCTCCAAGCTTCTTGATGAGGATCCATCTGA 1248
Query 1288 TGCTGAGGATGTTGAACTTTTAATGCTTGCATCTCAGTGGGCTGGTGCTGCATACGTACA 1347
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1249 TGCTGAGGATGTTGAACTTTTAATGCTTGCGTCTCAGTGGGCTGGTGCTGCATACGTACA 1308
Query 1348 ACAGGGAAAACTGAAAAGCGGAATCATACACTTGGAAAGAGTAGCGAAACTGAGAGAACC 1407
|||||||||| ||||||||||||||| |||||||||||||||||| ||||||| ||||||
Sbjct 1309 ACAGGGAAAAATGAAAAGCGGAATCACACACTTGGAAAGAGTAGCAAAACTGAAAGAACC 1368
Query 1408 TGGTGATCCTAAAAGCAAAGAGCATTACTTTGAGGCATTGCTGCTTCTTTCAAGCGCTTT 1467
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1369 CGGTGATCCGAAAAGCAAAGAGCATTACTTTGAGGCATTGCTGCTTCTTTCAAGTGCTTT 1428
Query 1468 GTACAAAGAAGGGCAGAGTGATGAAGCTGCAAAGATTTTACGAGTAGTAGTGGATCACAA 1527
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1429 GTACAAAGAAGGGCAGAGTGATGAAGCCGCAAAGATTTTACGAGTAGTAGTGGATCACAA 1488
Query 1528 TCCGGCGTACAAGCCTCTGCTGGAACAGTGTGAAGATGAGAATGAGCTAGTTAGCGATCT 1587
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1489 TCCGGCGTACAAGCCTCTGCTGGAACAGTGTGAAGATGAGAATGAGCTGGTTAGCGATCT 1548
Query 1588 TGTCAGTCGCAGAAAGGATCATTTCTGATTTTCTCCACGTGTGCAAACCGCATTGTAAGT 1647
|||||||||||| ||||||||||||||||||||||||| || ||||||||
Sbjct 1549 TGTCAGTCGCAGGAAGGATCATTTCTGATTTTCTCCAC-----CA-------TTGTAAGT 1596
Query 1648 ATTTGAATACTACGAGAGCGTTCAACTTTCAATAGTTCATAACCTTGTAGGTTAGTAATA 1707
|| ||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 1597 ATCTGAATACAACGAGAGCGTTCATCTTTCAAAAGTTCATAACCTTGTAGGTTAGTAATA 1656
Query 1708 CTGTAAATGTGTAATCCCATTGATG 1732
||||||||| |||||| |||||||
Sbjct 1657 GTGTAAATGTATAATCCAATTGATG 1681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65934214095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5