BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65113.1
Length=468
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315475 jgi|Araly1|315475|fgenesh1_pm.C_scaffold_2000508 385 2e-106
Ahg925381 jgi|Araly1|925381|scaffold_200942.1 368 2e-101
Ahg323393 jgi|Araly1|323393|fgenesh1_pm.C_scaffold_5000937 189 2e-47
> Ahg315475 jgi|Araly1|315475|fgenesh1_pm.C_scaffold_2000508
Length=276
Score = 385 bits (208), Expect = 2e-106
Identities = 256/279 (92%), Gaps = 3/279 (1%)
Strand=Plus/Plus
Query 1 ATGAAATGTGGTGTTTTGTTTATGATTTCTTGTCTTCTGATCACATTCCTTGTTCTCAGC 60
|||||||| ||||| ||||||||| |||||||||||| |||||||||| ||||||| |
Sbjct 1 ATGAAATGCGGTGTATTGTTTATGGTTTCTTGTCTTC---TCACATTCCTCGTTCTCAAC 57
Query 61 CATGTTAGAGAGGTGGAATCCAAAACAAAATGGGGATGCGACATGAACAGACCATTTCCA 120
||| |||||| ||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 58 CATATTAGAGTGGTGGAATCCAAAACAAAATGGGGATGCGACATGAACAGGCCTTTTCCT 117
Query 121 GGAAAGTGTGGAACTAATGGAAAGGATACATGCATAAGCGACATCaaaaaaaTGCCTGGT 180
||| |||| ||| ||||||||||| ||||||| ||||||||||| |||||||| | ||||
Sbjct 118 GGACAGTGCGGACCTAATGGAAAGAATACATGTATAAGCGACATAAAAAAAATACATGGT 177
Query 181 GCGCCAAAAGATCTTGTCGTACGTTGCGAATGTTCTCAACGTTTTGTTTGGAAGGGTTAC 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 178 GCGCCAAAAGATCTTGTCGCACGTTGCGAATGTTCTCAACGTTTTGTTTGGAAGGGTAAC 237
Query 241 CCTCCCGAGCGTTTATGTAAATGTCAATATGATTGTTAA 279
|||||||||||||||||||||||||||||||||||||||
Sbjct 238 CCTCCCGAGCGTTTATGTAAATGTCAATATGATTGTTAA 276
> Ahg925381 jgi|Araly1|925381|scaffold_200942.1
Length=320
Score = 368 bits (199), Expect = 2e-101
Identities = 264/294 (90%), Gaps = 9/294 (3%)
Strand=Plus/Plus
Query 1 ATGAAATGTGGTGTTTTGTTTATGATTTCTTGTCTTCTGATCACATTCCTTGTTCTCAGC 60
|||||||| |||||| |||||||| |||||||||||| |||||||||| |||||||||
Sbjct 24 ATGAAATGCGGTGTTCTGTTTATGGTTTCTTGTCTTC---TCACATTCCTCGTTCTCAGC 80
Query 61 CATGTTAGAGAGGTGGAATCCAAAACAAAATGGGGATGCGACATGAACAGACCATTTCCA 120
|||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 81 CATGTTAGAGTGGTGGAATCCAAAACAAAATGGGGATGCGACATGAACAGGTCTTTTCCT 140
Query 121 GGAAAGTGTGGAACTAATGGAAAGGATACATGCATAAGCGACATCaaaaaaaT-GCCTGG 179
||| |||| ||| ||||||||||| ||||||||||||||||||| |||||||| ||||||
Sbjct 141 GGACAGTGCGGACCTAATGGAAAGAATACATGCATAAGCGACAT-AAAAAAATTGCCTGG 199
Query 180 TGCGCCAAAAGATCTTGTCGTACGTTGCGAATGTTCT-CAACGTTTTGTTTGGAAGGGTT 238
||| ||||||||||||||||||||||||||||||||| | | |||||||||| ||||
Sbjct 200 TGCACCAAAAGATCTTGTCGTACGTTGCGAATGTTCTGCCGC-TTTTGTTTGGCCGGGTC 258
Query 239 ACCCTCCC-GAGCGTTTATGTAAATGTCAATATGATTGTTAAGCTTTACTATAT 291
| |||||| | |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 259 AACCTCCCCG-GCGTTTATGTAAATGTCAATATGATTGTTAAGTTTTACTATAT 311
> Ahg323393 jgi|Araly1|323393|fgenesh1_pm.C_scaffold_5000937
Length=243
Score = 189 bits (102), Expect = 2e-47
Identities = 139/155 (90%), Gaps = 10/155 (6%)
Strand=Plus/Plus
Query 130 GGAACTAATGGAAAGGA-TACATGCATAAGCGACATCaaaaaaa-TGCCTGGTGCGCC-A 186
|||||||||||||| || |||||||||||||||| | ||||||| | | ||||||||| |
Sbjct 94 GGAACTAATGGAAA-GAGTACATGCATAAGCGACCTAAAAAAAACT-CTTGGTGCGCCAA 151
Query 187 AAAGATCTTGTCGTACGTTGCGAATGTTCTCAAC-GTTTTGTTTGGAAGGGTTA-CCCTC 244
|||| |||||||||||| |||||||||||| || |||||||||||||||| || |||||
Sbjct 152 AAAG-TCTTGTCGTACGCTGCGAATGTTCT-GACTGTTTTGTTTGGAAGGG-TAGCCCTC 208
Query 245 CCGAGCGTTTATGTAAATGTCAATATGATTGTTAA 279
|||||||||||||||||||||||||| ||||||||
Sbjct 209 CCGAGCGTTTATGTAAATGTCAATATAATTGTTAA 243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16941081516
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5