BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65140.1
Length=957
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315476 jgi|Araly1|315476|fgenesh1_pm.C_scaffold_2000509 1304 0.0
Ahg475526 jgi|Araly1|475526|fgenesh2_kg.2__656__AT1G65170.1 496 2e-139
Ahg338628 jgi|Araly1|338628|fgenesh1_pg.C_scaffold_2000727 401 4e-111
> Ahg315476 jgi|Araly1|315476|fgenesh1_pm.C_scaffold_2000509
Length=945
Score = 1304 bits (706), Expect = 0.0
Identities = 878/959 (92%), Gaps = 19/959 (2%)
Strand=Plus/Plus
Query 4 ATGGA-TCTATCAGAGGTTAAAGAAATGGAGAAAGACGAAGAAATTGATTCAGATCTCTC 62
||||| || |||||||||| ||||| |||||||| ||||||||||||| ||||||||||
Sbjct 1 ATGGATTC-ATCAGAGGTTCAAGAAGTGGAGAAACTCGAAGAAATTGATCCAGATCTCTC 59
Query 63 AGACTCAG-ATACAGAGGAGCCTGAAGAGAAGATACTCGACGCCACTTCACTTTCAGCTC 121
|||||| | |||||||||| |||||||| |||||||| ||| ||||| |||||||||
Sbjct 60 AGACTC-GAATACAGAGGAATCTGAAGAGGAGATACTCAACGAAACTTCTGTTTCAGCTC 118
Query 122 TTGATATGATACTCAAGTCTCTGTGGAACATTAGCGTTTTCGTAAGCAATCTT-TCGATG 180
||||||||||||| |||||||||||||||||||| |||||| |||||| | || | ||||
Sbjct 119 TTGATATGATACTAAAGTCTCTGTGGAACATTAGAGTTTTCTTAAGCACT-TTGTTGATG 177
Query 181 GATTATGTTCAAGAAGCGAATCAGAGCCTCACAGATAATGAATCTGTTCCTCTACAAGAC 240
||||||||||||||||| ||||||||||||||| || ||||||||||||||||| |||||
Sbjct 178 GATTATGTTCAAGAAGCAAATCAGAGCCTCACAAATGATGAATCTGTTCCTCTAGAAGAC 237
Query 241 ATTCTTCGTA-TTTTCATGCTCAACAATCTCAGTCTCACTCATCCTCTGGAAGCAAACGG 299
|||||||||| ||||| | |||||||||||||||||||||||||||||||||| ||||||
Sbjct 238 ATTCTTCGTATTTTTC-TACTCAACAATCTCAGTCTCACTCATCCTCTGGAAGAAAACGG 296
Query 300 TGTTTCTAAACTGTTTCTAAACATCTTGGAGCTTATCCCTCGCTGGAACT-ATCACTTTG 358
|||||||||||||||||||||| ||||||||||||||||||||||||| | | |||||||
Sbjct 297 TGTTTCTAAACTGTTTCTAAACGTCTTGGAGCTTATCCCTCGCTGGAATTCA-CACTTTG 355
Query 359 AAGTGAATGAAGTAGCGAAAACGATTTGCATTAGGTGCAAGACGGATATGGCATATTCAG 418
||||||| ||||| |||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 356 AAGTGAACGAAGTCGCGAAAACGATTTGCATTAGATGCAAGACTGATATGGCATATTCAG 415
Query 419 GTGAAACGTCTTATGGTATCATCATCAATGCTAATTCACTCAGAGTATACAAGTCTGCAT 478
|||||| |||||||||||| ||||||||||||||||||||| || | |||||||
Sbjct 416 GTGAAAGGTCTTATGGTATTATCATCAATGCTAATTCACTC--AG------A-TCTGCAT 466
Query 479 TCAAGGAGTTTACATTTGAGAATATCATTAAGGCCAGCATGATCAATGTAAAGATGCTTT 538
||||||| ||| |||||||||||||| ||||||||| || |||||||||||||| |||||
Sbjct 467 TCAAGGATTTTGCATTTGAGAATATCCTTAAGGCCATCAGGATCAATGTAAAGAGGCTTT 526
Query 539 GTGACAAGGAAGGATGTGGGAAACGAAACTATGTTGATACTATGATAAGTAACCTTCCAT 598
|||| ||||||||||||| |||||||||||| || |||||||||||||||||||||||||
Sbjct 527 GTGATAAGGAAGGATGTGAGAAACGAAACTACGTCGATACTATGATAAGTAACCTTCCAT 586
Query 599 CTGCTTTTATAGTTGCACTTCAGTGGGAGAACAATGAGACCGAAAAAGAGATATTCGATA 658
|||||||||| ||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 587 CTGCTTTTATTGTTGCACTTCAGTGGGAGAACAATGAGACCGAAAAAGAGATTTTGGACA 646
Query 659 CAGCTTCTGTTCTGGCGACTGAAATAGATATTAGTGCTATATATAGATATGTAGGTGACA 718
||||||||||||||||||||||||||||||||||||| ||||| |||| | ||| ||||
Sbjct 647 CAGCTTCTGTTCTGGCGACTGAAATAGATATTAGTGCCATATACCGATACGAAGGCGACA 706
Query 719 GTGCATTTACCAAATACCGTCTTGTCTCAATGGTTTGGTCGCATGGAAATCTATACAACT 778
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 707 GTGCGTTTACCAAATACCGTCTTGTCTCAATGGTTTGGTCGCATGGAGATCTATACAACT 766
Query 779 GTGTAGCTTATGAAAACAATAGATGGGTCAGACATTTTTGTTCTGAGATAGAGGTTATTG 838
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 767 GTGTAGCTTATGAAAATAATAGATGGGTCAGACATTTTTGTTCTGAGATGGAGGTTATTG 826
Query 839 GAGACTGGGATGGTGTTCTCCGCATTTTTCGAGAACTGCATATTCGACCTGAGATTCTAT 898
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 827 GAGACTGGGATGGTGTTCTCAGCAGTTTTCGAGAACTGCATATTCGACCTGAGATTCTAT 886
Query 899 TCTTTGAAAACGCTATTCTAAAGGACCAGATGTTTTCCGAGCAGGGATCTGAAGACTGA 957
|||||||||||||||| | | |||||||||||||||||||||||||||||||||||||
Sbjct 887 TCTTTGAAAACGCTATGCCGAGGGACCAGATGTTTTCCGAGCAGGGATCTGAAGACTGA 945
> Ahg475526 jgi|Araly1|475526|fgenesh2_kg.2__656__AT1G65170.1
Length=759
Score = 496 bits (268), Expect = 2e-139
Identities = 379/431 (88%), Gaps = 13/431 (3%)
Strand=Plus/Plus
Query 527 TAAAGATGCTTTGTGACAAGGAAGGATGTGGGAAACGAAACTATGTTGATAC-TATGATA 585
||||||||| |||||| |||||||||||| ||||||||||||||||| | || |||||||
Sbjct 323 TAAAGATGCCTTGTGATAAGGAAGGATGTAGGAAACGAAACTATGTTCA-ACGTATGATA 381
Query 586 AGTAACCTTCCATCTGCTTTT-ATAGTTGCACTTCAGTGGGAGAACAATGAGACCGAAAA 644
| ||| |||||||||| |||| | | |||||||| |||||||||| |||||||| |||
Sbjct 382 AATAAACTTCCATCTG-TTTTCACAATTGCACTTGAGTGGGAGAAGAATGAGACTGAAGG 440
Query 645 AGAGATATTCGATACAGCTTCTGTTCTGGCGACTGAAATAGATATTAGTGCTATATATAG 704
|||||||||||||||| |||||||||| |||||||| || ||||||||||| ||||| |
Sbjct 441 AGAGATATTCGATACAACTTCTGTTCTAGCGACTGAGATTGATATTAGTGCAATATACCG 500
Query 705 ATATGTAGGTGACAGTGCATTTACCAAATACCGTCTTGTCTCAATGGTTTGGTCGCATGG 764
||| | ||||||||||||||| || |||||||||||||||||||||||||| ||| ||||
Sbjct 501 ATACGAAGGTGACAGTGCATTCACTAAATACCGTCTTGTCTCAATGGTTTGCTCGGATGG 560
Query 765 AAATCTATACAACTGTGTAGCTTATGAAAACAATAGATGGGTCAGACATTTTTGTTCTGA 824
| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 561 AGATCGATACAACTGTGTAGCTTATGAAAACAATAGATGGGTCAGACACTTTTGTTCTCA 620
Query 825 GATAGAGGTTATTGGAGACTGGGATGGTGTTCTCCGCATTTTTCGAGAACTGCATATTCG 884
|| ||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||
Sbjct 621 GAAAGAGGTTATTGGAGAGTGGGATGGTGTTCTCAGCATTTTTCGAAAACTGCATATTCG 680
Query 885 ACCTGAGATTCTATTCTTTGAAAACGCTATTCTAAAGGACCAGATGTTTTCCGAGCAGGG 944
||||||||||||||| |||||||| || ||| ||||||||||||| | ||||
Sbjct 681 ACCTGAGATTCTATTTTTTGAAAA---TAG------GGAGCAGATGTTTTCCGCGAAGGG 731
Query 945 ATCTGAAGACT 955
|||||||||||
Sbjct 732 ATCTGAAGACT 742
> Ahg338628 jgi|Araly1|338628|fgenesh1_pg.C_scaffold_2000727
Length=1254
Score = 401 bits (217), Expect = 4e-111
Identities = 372/445 (84%), Gaps = 18/445 (4%)
Strand=Plus/Plus
Query 472 TCTGCATTCAAGGAGTTTACATTTGAGAATATCATTAAGGCCAGCATGATCAA-TGTAAA 530
|||| ||||||| | |||||||||||||||||| |||||| || || ||| || | ||||
Sbjct 406 TCTGTATTCAAGCATTTTACATTTGAGAATATCGTTAAGGTCATCAAGATGAACT-TAAA 464
Query 531 GATGCTTTGTGACAAGGAAGGATGTGGGAAACGAAACTATGTTGATAC-TATGATAAGTA 589
||||| |||||| |||||||||||||| ||||| ||||||||| | || |||||||| ||
Sbjct 465 GATGCCTTGTGATAAGGAAGGATGTGGAAAACGGAACTATGTTCA-ACGTATGATAAATA 523
Query 590 ACCTTCCATCTGCTTTT-ATAGTTGCACTTCAGTGGGA-GAACAATGAGACCGAAAAAGA 647
| |||||||||| |||| | | |||||||| ||| ||| || |||||||| | | |||
Sbjct 524 AACTTCCATCTG-TTTTCACAATTGCACTTGAGT-GGACAAAGAATGAGACTGCAGGAGA 581
Query 648 GATATTCGATACAGCTTCTGTTCTGGCGACTGAAATAGATATTAGTGCT-ATATA-TAGA 705
|||| |||||| |||||||||||||||||||| || ||| |||||| | ||||| | |
Sbjct 582 AATATACGATACTGCTTCTGTTCTGGCGACTGAGATTGATGTTAGTG-TGATATACCA-A 639
Query 706 TATGTAGGTGACAGTGCATTTACCAAATACCGTCTTGTCTCAATGGTTTGGTCGCATGGA 765
|| |||||||||| ||| || |||||||||||||||||||||||||| |||||||||
Sbjct 640 TACAAAGGTGACAGTACATGCACTAAATACCGTCTTGTCTCAATGGTTTGCTCGCATGGA 699
Query 766 -AATCTATACAACTGTGTAGCTTATGAAAACAATAGATGGGTCAGACATTTTTGTTCTGA 824
|| | |||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 700 GAA-CGATACAACTGTGTAGCTTATGAAAACAATAGATGGGTCAGATATCTTCGTTCTGA 758
Query 825 GATAGAGGTTATTGGAGACTGGGATGGTGTTCTCCGCATTT-TTCGA-GAACTGCATATT 882
||||||||||||||||||||||||| ||||| || |||||| || | | | | ||||
Sbjct 759 GATAGAGGTTATTGGAGACTGGGATAGTGTTGTCAGCATTTGTTTAACGCAGAG--TATT 816
Query 883 CGACCTGAGATTCTATTCTTTGAAA 907
||||| ||||||| || |||||||
Sbjct 817 CGACCCCAGATTCTGTTTTTTGAAA 841
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35530558644
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5