BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65160.1
Length=930
Score E
Sequences producing significant alignments: (Bits) Value
Ahg338628 jgi|Araly1|338628|fgenesh1_pg.C_scaffold_2000727 603 1e-171
Ahg475526 jgi|Araly1|475526|fgenesh2_kg.2__656__AT1G65170.1 424 8e-118
> Ahg338628 jgi|Araly1|338628|fgenesh1_pg.C_scaffold_2000727
Length=1254
Score = 603 bits (326), Expect = 1e-171
Identities = 403/439 (92%), Gaps = 9/439 (2%)
Strand=Plus/Plus
Query 418 TCTGCATTCAAGGATTTTACATTTGAGAATATCATTAAGGTCATCAAGATGAACTTAAAG 477
|||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 406 TCTGTATTCAAGCATTTTACATTTGAGAATATCGTTAAGGTCATCAAGATGAACTTAAAG 465
Query 478 ATGCCTTGTGATAAGGAAGGATGTGGGAAAC-AAAGCTATGTTCACCGTATGATAACCAA 536
|||||||||||||||||||||||||| |||| || ||||||||| |||||||||| ||
Sbjct 466 ATGCCTTGTGATAAGGAAGGATGTGGAAAACGGAA-CTATGTTCAACGTATGATAAATAA 524
Query 537 ACTTCCATCTGTTTTCACAATTGCACTTGAGTGGACAAAGAATGAGACTGCAGGAGAAAT 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 ACTTCCATCTGTTTTCACAATTGCACTTGAGTGGACAAAGAATGAGACTGCAGGAGAAAT 584
Query 597 ATTCGATACAGTTTCTGTTCTGGCGACTGAGATTGATGTTAATGTGATATACCAATGCGA 656
|| |||||| | ||||||||||||||||||||||||||||| |||||||||||||| | |
Sbjct 585 ATACGATACTGCTTCTGTTCTGGCGACTGAGATTGATGTTAGTGTGATATACCAATACAA 644
Query 657 AGGTGACA-TTCGATATACCAAGTACCGTCTTGTCTCAATGGTTTGCTTGCATGGA-AAT 714
|||||||| | | || || || ||||||||||||||||||||||||| ||||||| ||
Sbjct 645 AGGTGACAGTAC-ATGCACTAAATACCGTCTTGTCTCAATGGTTTGCTCGCATGGAGAA- 702
Query 715 CGATACAACTGTGTAGCTTATGAAAACAATAGATGGGTCAGATATCTTCGTTCTGAGATA 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 CGATACAACTGTGTAGCTTATGAAAACAATAGATGGGTCAGATATCTTCGTTCTGAGATA 762
Query 775 GAGGTTATTGGAGACTGGGAGAATGTTGTCAGCATTTGTTTAAAG-A-A-TATCCGTCCA 831
|||||||||||||||||||| | |||||||||||||||||||| | | | ||| || ||
Sbjct 763 GAGGTTATTGGAGACTGGGATAGTGTTGTCAGCATTTGTTTAACGCAGAGTATTCGACCC 822
Query 832 CAGATTCTGTTTTTCGAAA 850
|||||||||||||| ||||
Sbjct 823 CAGATTCTGTTTTTTGAAA 841
Score = 538 bits (291), Expect = 3e-152
Identities = 347/374 (93%), Gaps = 4/374 (1%)
Strand=Plus/Plus
Query 46 GATCCAGATCTCTCACTAACGCAAGACGATGCAGAGGAACCTATAGGGAAGCTAAACGCC 105
|||||||||| ||| ||||||||||||||||||||||| || ||| ||| | |||||||
Sbjct 4 GATCCAGATCGATCAGTAACGCAAGACGATGCAGAGGAATCTGTAGTGAAACGAAACGCC 63
Query 106 ACCTGTGTTTCAGCTCTTGCTATGATACTCAAGTCTATATGGAACATTAACGTTTTCGCA 165
|| ||||||||||||||| ||||||| |||||||| ||||| |||||||||||||||||
Sbjct 64 ACTTGTGTTTCAGCTCTTAATATGATAATCAAGTCTCTATGGGACATTAACGTTTTCGCA 123
Query 166 AGCTCCAGAGAAGATGAATCTGTTTTTCATGAGTTCCTTCTCAACGATCTAAGTCTCAAG 225
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 124 AGCTCCAGAGAAGATGAACCTGTTTTTCATGAGTTCCTTCTCAACGATCTAAGTCTCAAA 183
Query 226 CATCCTCTGGAAGCAAATGGTGTTTTTGACCTGTTTCTAAACATCTTGGAGGCTCTGCCT 285
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 184 CATCCTCTGGAAGCAAATGGTGTTTTTGACCTGTTTCTAAACATCTTGGAGGCTTTGCCT 243
Query 286 AACTGGGGTTTGTACTTTGAAGTATACGAAGTGGCTAAAAAGATTTGCAATAGATGCAA- 344
|||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 244 AACTGGGGTTCGTACTTTGAAGTATACGAAATGGCGAAAAAGATTTGCAATAGATGCAAG 303
Query 345 ACTGGATTTGGAATATCCTG-CTGAACGTTCTTTTCGTCTTATCATCAGTGCTAGTTCAC 403
| |||||||||||||||| | |||||||||||||| |||||||||||| |||||||||||
Sbjct 304 A-TGGATTTGGAATATCC-GACTGAACGTTCTTTTGGTCTTATCATCAATGCTAGTTCAC 361
Query 404 TTAGAGAAGTCAAG 417
| ||||||||||||
Sbjct 362 TCAGAGAAGTCAAG 375
> Ahg475526 jgi|Araly1|475526|fgenesh2_kg.2__656__AT1G65170.1
Length=759
Score = 424 bits (229), Expect = 8e-118
Identities = 374/441 (85%), Gaps = 21/441 (5%)
Strand=Plus/Plus
Query 423 ATTCAAGGATTTTACATTTGAGAATATCATTAAGGTCATCAA-GATGA-ACTTAAAGATG 480
|||| || || ||||||| ||||| ||| || || |||| || ||| | ||||||||||
Sbjct 273 ATTCGAGAATCTTACATTCGAGAAGATCGTTCAGATCAT-AAGGAT-AGGCTTAAAGATG 330
Query 481 CCTTGTGATAAGGAAGGATGTGGGAAAC-AAAGCTATGTTCACCGTATGATAACCAAACT 539
||||||||||||||||||||| |||||| ||| ||||||||| |||||||||| |||||
Sbjct 331 CCTTGTGATAAGGAAGGATGTAGGAAACGAAA-CTATGTTCAACGTATGATAAATAAACT 389
Query 540 TCCATCTGTTTTCACAATTGCACTTGAGT-GGACAAAGAATGAGACTGCAGGAGAAATAT 598
||||||||||||||||||||||||||||| ||| ||||||||||||| |||||| ||||
Sbjct 390 TCCATCTGTTTTCACAATTGCACTTGAGTGGGA-GAAGAATGAGACTGAAGGAGAGATAT 448
Query 599 TCGATACAGTTTCTGTTCTGGCGACTGAGATTGATGTTAATGTGATATACCAATGCGAAG 658
|||||||| ||||||||| ||||||||||||||| ||| || ||||||| || |||||
Sbjct 449 TCGATACAACTTCTGTTCTAGCGACTGAGATTGATATTAGTGCAATATACCGATACGAAG 508
Query 659 GTGACA-TTCGATAT-ACCAAGTACCGTCTTGTCTCAATGGTTTGCTTGCATGGAAATCG 716
|||||| | | || | || || ||||||||||||||||||||||||| | ||||| ||||
Sbjct 509 GTGACAGTGC-AT-TCACTAAATACCGTCTTGTCTCAATGGTTTGCTCGGATGGAGATCG 566
Query 717 ATACAACTGTGTAGCTTATGAAAACAATAGATGGGTCAGATA-TCTTCGTTCTGAGATAG 775
|||||||||||||||||||||||||||||||||||||||| | | || ||||| ||| ||
Sbjct 567 ATACAACTGTGTAGCTTATGAAAACAATAGATGGGTCAGACACTTTT-GTTCTCAGAAAG 625
Query 776 AGGTTATTGGAGACTGGGA-GAATGTTGTCAGCATTTGTTT-AAA---GAATATCCGTCC 830
||||||||||||| ||||| | |||| ||||||||| || ||| | |||| || ||
Sbjct 626 AGGTTATTGGAGAGTGGGATGG-TGTTCTCAGCATTT-TTCGAAAACTGCATATTCGACC 683
Query 831 ACAGATTCTGTTTTTCGAAAA 851
||||||| ||||| |||||
Sbjct 684 TGAGATTCTATTTTTTGAAAA 704
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34501239885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5