BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65170.1
Length=780
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475526 jgi|Araly1|475526|fgenesh2_kg.2__656__AT1G65170.1 1112 0.0
Ahg338628 jgi|Araly1|338628|fgenesh1_pg.C_scaffold_2000727 488 2e-137
Ahg315476 jgi|Araly1|315476|fgenesh1_pm.C_scaffold_2000509 422 2e-117
> Ahg475526 jgi|Araly1|475526|fgenesh2_kg.2__656__AT1G65170.1
Length=759
Score = 1112 bits (602), Expect = 0.0
Identities = 709/761 (93%), Gaps = 6/761 (1%)
Strand=Plus/Plus
Query 1 ATGATACTCAAGTCTCTGTGGCAAATTAGCGTTTTCGCAAGACAGAACATAGTACGTCAA 60
||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||
Sbjct 1 ATGATACTCAAGTCTCTGTGGCAAATTAGCGTTTTTGAAAGACAGAACAAAGTACGTCAG 60
Query 61 AGCTTCACAGGCTCATTTCTTAAGGAAGACATACTTCGTATTTCCTTTATCAACAATCTC 120
|| ||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 61 AGATTCACAGGCTCTTTTCTTAAGGAAGACATACTTCGTCTTTCTTTTATCAACAATCTC 120
Query 121 AGTCTCAGTCAACCTCCGGAAGCAAATAACATCTTTGACCTATTTGTATACATCTTGGAG 180
||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||
Sbjct 121 AGTCTCAGTCAACCTCCGGAAGCAAATAATGTCTTTGAACTGTTTGTATACATCTTGGAG 180
Query 181 AACTTACCTCCGTGGAATCCATACTTTGAAGTGTACGAATTGGCGAACAAGATTTGCAAT 240
|| |||||||| ||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 181 AATTTACCTCCCTGGAACCCGTACTTTGAAGTGTACGAATTGGCGAAAAAGATTTGCAAT 240
Query 241 AGATGCAAGATGGATTTGGAGTATCCAGGATTATTCGAGAATCTTACATTCGAGAAGTTC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 241 AGATGCAAGATGGATTTGGAGTATCCAGGATTATTCGAGAATCTTACATTCGAGAAGATC 300
Query 301 GTTCAAATCATCAGGATAAGCTTAAAGATGCCTTGTGATAAGGAAGGATGTGGGAAACGA 360
||||| ||||| |||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 301 GTTCAGATCATAAGGATAGGCTTAAAGATGCCTTGTGATAAGGAAGGATGTAGGAAACGA 360
Query 361 AACTATGTTCAACGTATGATAAATAAACTTCCAACTGTTTTCACAATTGCGCTTGAGTGG 420
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 361 AACTATGTTCAACGTATGATAAATAAACTTCCATCTGTTTTCACAATTGCACTTGAGTGG 420
Query 421 GA-ACACAATGAGACTGAAGGAGAGATATTTGATACAACTTCTGTTCTGGCGACTGAGAT 479
|| | | ||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 421 GAGA-AGAATGAGACTGAAGGAGAGATATTCGATACAACTTCTGTTCTAGCGACTGAGAT 479
Query 480 TGATGTTAGTGTGATATACCAATACGAAGGTGATAGTGCATTTACCAAATACCGTCTTGT 539
|||| |||||| ||||||| |||||||||||| |||||||| || ||||||||||||||
Sbjct 480 TGATATTAGTGCAATATACCGATACGAAGGTGACAGTGCATTCACTAAATACCGTCTTGT 539
Query 540 CTCAATGGTTTGCTCGGATGGAGATCGATACAACTGCGTAGCTTATGAAGACAATAGATG 599
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 540 CTCAATGGTTTGCTCGGATGGAGATCGATACAACTGTGTAGCTTATGAAAACAATAGATG 599
Query 600 GGTCAGACA-TGTTGGTTCTCAGAAAAAGGTTATTGGAGACTGGGATGGTGTTCTCAGCA 658
||||||||| | ||| |||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 600 GGTCAGACACTTTTG-TTCTCAGAAAGAGGTTATTGGAGAGTGGGATGGTGTTCTCAGCA 658
Query 659 TTTTTCGAGAACTGCATATTCGATCTGAGATTCTGTTTTTTGAAAAT-GGAA-CAGATGT 716
|||||||| |||||||||||||| |||||||||| |||||||||||| || | |||||||
Sbjct 659 TTTTTCGAAAACTGCATATTCGACCTGAGATTCTATTTTTTGAAAATAGGGAGCAGATGT 718
Query 717 TTTCCGCGCAGGGATCTCAAGCCTCGTGTGTTATTTCTTAG 757
|||||||| |||||||| ||| |||||||||||||||||||
Sbjct 719 TTTCCGCGAAGGGATCTGAAGACTCGTGTGTTATTTCTTAG 759
> Ahg338628 jgi|Araly1|338628|fgenesh1_pg.C_scaffold_2000727
Length=1254
Score = 488 bits (264), Expect = 2e-137
Identities = 382/438 (87%), Gaps = 12/438 (3%)
Strand=Plus/Plus
Query 272 TATTCGAGAATCTTACATTCGAGAAGT-TCGTTCAA-ATCATCAGGAT-AAGCTTAAAGA 328
||||| || || ||||||| ||||| | ||||| || |||||| ||| || ||||||||
Sbjct 410 TATTCAAGCATTTTACATTTGAGAA-TATCGTT-AAGGTCATCAAGATGAA-CTTAAAGA 466
Query 329 TGCCTTGTGATAAGGAAGGATGTGGGAAACGAAACTATGTTCAACGTATGATAAATAAAC 388
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 467 TGCCTTGTGATAAGGAAGGATGTGGAAAACGGAACTATGTTCAACGTATGATAAATAAAC 526
Query 389 TTCCAACTGTTTTCACAATTGCGCTTGAGTGGGA-ACACAATGAGACTGAAGGAGAGATA 447
||||| |||||||||||||||| ||||||| ||| | | |||||||||| |||||| |||
Sbjct 527 TTCCATCTGTTTTCACAATTGCACTTGAGT-GGACAAAGAATGAGACTGCAGGAGAAATA 585
Query 448 TTTGATACAACTTCTGTTCTGGCGACTGAGATTGATGTTAGTGTGATATACCAATACGAA 507
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 586 TACGATACTGCTTCTGTTCTGGCGACTGAGATTGATGTTAGTGTGATATACCAATACAAA 645
Query 508 GGTGATAGTGCATTTACCAAATACCGTCTTGTCTCAATGGTTTGCTCGGATGGAGATCGA 567
||||| ||| ||| || |||||||||||||||||||||||||||||| ||||||| |||
Sbjct 646 GGTGACAGTACATGCACTAAATACCGTCTTGTCTCAATGGTTTGCTCGCATGGAGAACGA 705
Query 568 TACAACTGCGTAGCTTATGAAGACAATAGATGGGTCAGACATGTTGGTTCTCAGAAAAAG 627
|||||||| |||||||||||| ||||||||||||||||| || || ||||| ||| | ||
Sbjct 706 TACAACTGTGTAGCTTATGAAAACAATAGATGGGTCAGATATCTTCGTTCTGAGATAGAG 765
Query 628 GTTATTGGAGACTGGGATGGTGTTCTCAGCATTT-TTCGA-GAACTGCATATTCGATCTG 685
|||||||||||||||||| ||||| ||||||||| || | | | | ||||||| |
Sbjct 766 GTTATTGGAGACTGGGATAGTGTTGTCAGCATTTGTTTAACGCAGAG--TATTCGACCCC 823
Query 686 AGATTCTGTTTTTTGAAA 703
||||||||||||||||||
Sbjct 824 AGATTCTGTTTTTTGAAA 841
Score = 132 bits (71), Expect = 4e-30
Identities = 136/167 (81%), Gaps = 5/167 (3%)
Strand=Plus/Plus
Query 102 TTCCTTTATCAACAATCTCAGTCTCAGTCAACCTCCGGAAGCAAATAACATCTTTGACCT 161
|||| || ||||| |||| ||||||| || |||| |||||||||| | ||||||||
Sbjct 157 TTCC-TTCTCAACGATCTAAGTCTCAAACATCCTCTGGAAGCAAATGGTGTTTTTGACCT 215
Query 162 ATTTGTATACATCTTGGAGAAC-TTACCT-CCGTGGAATCCATACTTTGAAGTGTACGAA 219
||| || ||||||||||| | || ||| | ||| | | ||||||||||| ||||||
Sbjct 216 GTTTCTAAACATCTTGGAG-GCTTTGCCTAAC-TGGGGTTCGTACTTTGAAGTATACGAA 273
Query 220 TTGGCGAACAAGATTTGCAATAGATGCAAGATGGATTTGGAGTATCC 266
||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 274 ATGGCGAAAAAGATTTGCAATAGATGCAAGATGGATTTGGAATATCC 320
> Ahg315476 jgi|Araly1|315476|fgenesh1_pm.C_scaffold_2000509
Length=945
Score = 422 bits (228), Expect = 2e-117
Identities = 347/403 (86%), Gaps = 14/403 (3%)
Strand=Plus/Plus
Query 309 CATCAGGAT-AAGCT-TAAAGATGCCTTGTGATAAGGAAGGATGTGGGAAACGAAACTAT 366
||||||||| || | |||||| || |||||||||||||||||||| ||||||||||||
Sbjct 501 CATCAGGATCAA--TGTAAAGAGGCTTTGTGATAAGGAAGGATGTGAGAAACGAAACTAC 558
Query 367 GTTC-A-ACGTATGATAAATAAACTTCCAACTG-TTTTCACAATTGCGCTTGAGTGGGA- 422
| || | || |||||||| ||| |||||| ||| |||| | |||| ||| |||||||
Sbjct 559 G-TCGATAC-TATGATAAGTAACCTTCCATCTGCTTTT-ATTGTTGCACTTCAGTGGGAG 615
Query 423 ACACAATGAGACTGAAGGAGAGATATTT-GATACAACTTCTGTTCTGGCGACTGAGATTG 481
| |||||||||| ||| |||||| ||| || ||| ||||||||||||||||||| || |
Sbjct 616 A-ACAATGAGACCGAAAAAGAGAT-TTTGGACACAGCTTCTGTTCTGGCGACTGAAATAG 673
Query 482 ATGTTAGTGTGATATACCAATACGAAGGTGATAGTGCATTTACCAAATACCGTCTTGTCT 541
|| |||||| ||||||| ||||||||| || ||||| ||||||||||||||||||||||
Sbjct 674 ATATTAGTGCCATATACCGATACGAAGGCGACAGTGCGTTTACCAAATACCGTCTTGTCT 733
Query 542 CAATGGTTTGCTCGGATGGAGATCGATACAACTGCGTAGCTTATGAAGACAATAGATGGG 601
|||||||||| ||| ||||||||| ||||||||| |||||||||||| | ||||||||||
Sbjct 734 CAATGGTTTGGTCGCATGGAGATCTATACAACTGTGTAGCTTATGAAAATAATAGATGGG 793
Query 602 TCAGACATGTTGGTTCTCAGAAAAAGGTTATTGGAGACTGGGATGGTGTTCTCAGCATTT 661
|||||||| || ||||| ||| ||||||||||||||||||||||||||||||||| ||
Sbjct 794 TCAGACATTTTTGTTCTGAGATGGAGGTTATTGGAGACTGGGATGGTGTTCTCAGCAGTT 853
Query 662 TTCGAGAACTGCATATTCGATCTGAGATTCTGTTTTTTGAAAA 704
|||||||||||||||||||| |||||||||| || ||||||||
Sbjct 854 TTCGAGAACTGCATATTCGACCTGAGATTCTATTCTTTGAAAA 896
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28782802335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5