BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65190.1
Length=1685
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315482 jgi|Araly1|315482|fgenesh1_pm.C_scaffold_2000515 749 0.0
Ahg925419 jgi|Araly1|925419|scaffold_200980.1 747 0.0
Ahg917565 jgi|Araly1|917565|Al_scaffold_0008_2316 276 4e-73
Ahg925502 jgi|Araly1|925502|scaffold_201063.1 250 3e-65
Ahg338701 jgi|Araly1|338701|fgenesh1_pg.C_scaffold_2000800 176 4e-43
Ahg907919 jgi|Araly1|907919|Al_scaffold_0002_1000 167 3e-40
> Ahg315482 jgi|Araly1|315482|fgenesh1_pm.C_scaffold_2000515
Length=1137
Score = 749 bits (405), Expect = 0.0
Identities = 665/783 (85%), Gaps = 48/783 (6%)
Strand=Plus/Plus
Query 111 ATGGGTTGGTTGTGGAGGAAGAAGAAAAAGAATAAGAAGCTAGA-ATTGGAGAGAGGAGC 169
||||||||||| ||||||||| || ||||||||||| | | |||||||||||| ||
Sbjct 1 ATGGGTTGGTTTTGGAGGAAG-AG-----GAATAAGAAGCGA-ACATTGGAGAGAGGGGC 53
Query 170 CAAGTTGTTAG-AAGAGCTCATCGAATGT-TGCGATGGCAAATCCAATCCCATCAAATTC 227
| | |||| | |||| || ||||||| | || |||||| |||||||||||||||||||
Sbjct 54 GATGGTGTT-GAAAGATCTGATCGAAT-TAGGCCATGGCATATCCAATCCCATCAAATTC 111
Query 228 TTCTCTGCTGATGAGATCCGCAAAGCCACCAACATTTTCAGCCACTCTAATCTTGTTCAT 287
||||||||||||||||||| |||||||||||||| ||||||| | ||||||| |||| |
Sbjct 112 TTCTCTGCTGATGAGATCCTCAAAGCCACCAACAATTTCAGCAAATCTAATCATGTT-TT 170
Query 288 CAGGA--AGAATT-TTACTGCC-AATGGTATTCAGGTAAGAACGAGAACCATCCCATGAT 343
| || || || ||||| || | |||||||||||||||||||||||||||||||||||
Sbjct 171 TA-GATTAG-CTTATTACT-CCGATTGGTATTCAGGTAAGAACGAGAACCATCCCATGAT 227
Query 344 ACTCATCAGGAAA---GAT-TCTAATGTGAG-GGGAGG--AGATCTTGTGTGCCGCAACA 396
|||||||| |||| | | || || ||| |||| ||||||| ||||||| |||
Sbjct 228 ACTCATCAAGAAACGTGCTCGCTTTTG-GAGCTTGAGGACAGATCTTATGTGCCGGGACA 286
Query 397 TAGCAGTTTCATCGATGGTGAGTGGTCACAAGAACTTTATGAAATTGGTTGGATGTTGTC 456
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 287 TAGCAGTTTCATCGATGGTGAGTGGTCACAAAAACTTTTTGAAATTGGTTGGATGTTGTC 346
Query 457 TTGAGTT-GAAATATCCAGTCACGGTCTATCATGGTGTTAAGAAACATTATGGATTAGA- 514
||||||| |||| | |||||| ||| ||||||||||| |||||||||||| |||| |
Sbjct 347 TTGAGTTGGAAA-AGCCAGTCTTGGTTTATCATGGTGTAAAGAAACATTATCAATTA-AT 404
Query 515 AAT-AGATGAGAAGCCGTGGAAAAGAAGAATGAAGATAGCAGAAGATATCGCCACTGCTT 573
||| || |||| || |||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 405 AATAAG-TGAGCAGACGTGGAAAAGGAGAATGAAGATAGCAGAAGATATCGCTACTGCTT 463
Query 574 TAGCTTACCTTCACACTGCCTTCCCTAGGCCCCTCGTATATATGATTTTGTCTCATCG-G 632
||||||||||||||||||| |||||||||||| ||||||||| || ||||||| || | |
Sbjct 464 TAGCTTACCTTCACACTGCGTTCCCTAGGCCCTTCGTATATACGAGTTTGTCT-ATTGAG 522
Query 633 AATATCTTATTGGATGAAGATGGTGTCGCGAAGCTGACTGATTTCTCTCACTGCGTCTCA 692
||||||||||||||||||||||| ||||| ||||||| ||||||||||| ||||||||||
Sbjct 523 AATATCTTATTGGATGAAGATGGGGTCGCCAAGCTGATTGATTTCTCTCTCTGCGTCTCA 582
Query 693 ATCCCAGAAGGAGAAACATTTGTCCGGGTTGA-GGCAGAAG--AT-GGATTCTATAGTTA 748
||||||||||||||||||||||||| |||||| | ||||| || ||| ||||||||
Sbjct 583 ATCCCAGAAGGAGAAACATTTGTCCAGGTTGACAG-AGAAGATATCTTATTATATAGTTA 641
Query 749 CTTTG-CTGATAATTAC--G-TTAACAGTGTTGTAGTCTCAGAGAAAACAGATGTCTTTG 804
||| | | |||| |||| | | | ||||| ||||||||||||||||||||||||||||
Sbjct 642 CTTGGAC-GATAGTTACATGATGAGCAGTGGCGTAGTCTCAGAGAAAACAGATGTCTTTG 700
Query 805 CCTTTGGAATCTTTATGGGTCTAACGCTTCTATTAGGATACAAA-AGCTATTTCGAGCAT 863
|||||||||| |||||||||||| |||||||||||||| || || | ||||| ||| ||
Sbjct 701 CCTTTGGAATGTTTATGGGTCTATCGCTTCTATTAGGAAACCAATAT-TATTTTGAGTAT 759
Query 864 TAT 866
|||
Sbjct 760 TAT 762
Score = 387 bits (209), Expect = 2e-106
Identities = 330/383 (86%), Gaps = 30/383 (8%)
Strand=Plus/Plus
Query 943 ATGCTCGATATTGGCTGTCAAAATTAAAGAAAGACCGACCAATGGAAGAGATTGCAGATC 1002
||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 761 ATGCTGGATATTGGCTGTCAAAATTAAAGGAAGACCGACGAATGGAAGAGATTGCAGATC 820
Query 1003 GAAAGATGATAAAAAATATGGGTCAAATCTT-AGAACAAGAGCTCTT-TCAAATGAAAGC 1060
||||||||||| |||| ||||||||||| || |||||||||||| || ||||||| ||||
Sbjct 821 GAAAGATGATAGAAAAGATGGGTCAAAT-TTCAGAACAAGAGCT-TTGTCAAATGGAAGC 878
Query 1061 TTTCCGGATGCTCTCACTGAGATGCATGGGTCCTAGTGAAGAAGTTCCAACGATGGTGGA 1120
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 879 TTTCCGAATGCTCTCACTGAGATGCATCGGTCCTAGTGAAGAAGTTCCAACGATGGTGGA 938
Query 1121 GGTGGCCAAAGAACTAAAGAAGATCCAAAAATCTCTTAATAAAGA-T-T-CTT--A-T-C 1173
||||||||||||||||||||||| |||| ||||||| |||| || | | ||| | | |
Sbjct 939 AGTGGCCAAAGAACTAAAGAAGATTCAAACATCTCTTTATAACGACTCTTCTTCTACTTC 998
Query 1174 GAGGagaagaagaagaa-g--aagaa--agtgaagaTG-AA---T-T--T-A-A-CGACT 1218
||| ||| |||||||| | ||||| | |||||| || | | | | | |||||
Sbjct 999 -AGGTGAAAAAGAAGAAAGTGAAGAACTAAAGAAGATCCAAAGATCTCCTTATAACGACT 1057
Query 1219 CTTCTTCTCTTTCTTCAGGTCAAACCCAATTCGACTCTGCCCAAGACATTTCTTCCACAG 1278
||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1058 CTTCTTCTC---CTTCAGGTGAAACCCAATTCGACTCTGCCCAAGACATTTCTTCCTCAG 1114
Query 1279 TGGTCCTCTCAAACCAAACTTAA 1301
| ||| |||||||||| ||||||
Sbjct 1115 TCGTCGTCTCAAACCAGACTTAA 1137
> Ahg925419 jgi|Araly1|925419|scaffold_200980.1
Length=1126
Score = 747 bits (404), Expect = 0.0
Identities = 612/707 (87%), Gaps = 36/707 (5%)
Strand=Plus/Plus
Query 159 GAGAGAGGAGCCAAGTTGTTAGA-AGAGCTCATCGAATGT-TGCGATGGCAAATCCAATC 216
||||||||||||||||||||| | ||| || ||||||| | || |||||| ||||||||
Sbjct 87 GAGAGAGGAGCCAAGTTGTTA-ACAGATCTGATCGAAT-TCGGCCATGGCATATCCAATC 144
Query 217 CCATCAAATTCTTCTCTGCTGATGAGATCCGCAAAGCCACCAACATTTTCAGCCAC-TCT 275
|||||||||||||||||||||||||||||| |||||||||||||| ||||||| || | |
Sbjct 145 CCATCAAATTCTTCTCTGCTGATGAGATCCTCAAAGCCACCAACAATTTCAGCGACAT-T 203
Query 276 AATCTTG-TTCATCAGGA--AGAATT-TTACTGCC-AATGGTATTCAGGTAAGAACGAGA 330
|||| || ||| || || || || ||||| || | ||||||||||||||||||||||
Sbjct 204 AATCGTGTTTC-TC--GATTAG-CTTATTACT-CCGATTGGTATTCAGGTAAGAACGAGA 258
Query 331 ACCATCCCATGATACTCATCAGGAAAGATTCTAA-TGT-G-AGGG-GAG-G-AGATCTTG 384
||||||||||||||||||||| ||||| | |||| | | | || ||| | |||||||
Sbjct 259 ACCATCCCATGATACTCATCAAGAAAGGTGCTAACTTTTGGAGCTCGAGAGTAGATCTTT 318
Query 385 TGTGCCGCAACATAGCAGTTTCATCGATGGTGAGTGGTCACAAGAACTTTATGAAATTGG 444
||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 319 TGTGCCGGGACATAGCAGTTTCATCGATGGTGAGTGGTCACAAAAACTTTTTGAAATTGG 378
Query 445 TTGGATGTTGTCTTGAGT-TGAAATATCCAGTCACGGTCTATCATGGTGTTAAGAAACAT 503
|||||||||||||||||| |||| | ||||||| ||| ||| | ||||||||||||||
Sbjct 379 TTGGATGTTGTCTTGAGTCTGAAG-AGCCAGTCATGGTTTATAACGGTGTTAAGAAACAC 437
Query 504 TATGGATTAGAAATAGATGAGAAGCCGTGGAAAAGAAGAATGAAGATAGCAGAAGATATC 563
||| ||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 438 TATCGATTAGATATAGATGAGCAGCCGTGGAAAAGGAGAATGAAGATAGCAGAAGATATC 497
Query 564 GCCACTGCTTTAGCTTACCTTCACACTGCCTTCCCTAGGCCCCTCGTATATATGATTTTG 623
|| |||||||| ||||||||||||||||||||||| |||||| ||||||||| |||||||
Sbjct 498 GCTACTGCTTTTGCTTACCTTCACACTGCCTTCCCAAGGCCCTTCGTATATAGGATTTTG 557
Query 624 TCTCATCGGAATATCTTATTGGATGAAGATGGTGTCGCGAAGCTGACTGATTTCTCTCAC 683
| || | ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 558 TATCCTTGGAATATCTTATTGGATGAAGATGGGGTCGCGAAGCTGACTGATTTCTCTCTC 617
Query 684 TGCGTCTCAATCCCAGAAGGAGAAACATTTGTCCGGGTTGAGGCAGAAGATGGATTCTAT 743
|||||||||||||||||||||||||||||||| |||||| || ||| | |||
Sbjct 618 TGCGTCTCAATCCCAGAAGGAGAAACATTTGTTAAGGTTGA--CA-AAG-T-----CTAC 668
Query 744 AGTTACTT-TGCTGATAATTACGTTAACAGTGTTGTAGTCTCAGAGAAAACAGATGTCTT 802
|||||||| | | || | ||| || ||||| ||||| ||||||||||||||||||||
Sbjct 669 AGTTACTTGTATTTTTA-TGACGATAGCAGTGGCGTAGTATCAGAGAAAACAGATGTCTT 727
Query 803 TGCCTTTGGAATCTTTATGGGTCTAACGCTTCTATTAGGATA-CAAA 848
|||||||||||| ||||||||||||||||||||||||||| | ||||
Sbjct 728 TGCCTTTGGAATGTTTATGGGTCTAACGCTTCTATTAGGAAAACAAA 774
> Ahg917565 jgi|Araly1|917565|Al_scaffold_0008_2316
Length=603
Score = 276 bits (149), Expect = 4e-73
Identities = 194/215 (90%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 959 GTCAAAATTAAAGAAAGACCGACCAATGGAAGAGATTGCAGATCGAAAGATGATAAAAAA 1018
||||||||||||| ||||||||| ||| |||||||||||||||| | |||||||| ||||
Sbjct 345 GTCAAAATTAAAGGAAGACCGACGAATCGAAGAGATTGCAGATCCAGAGATGATAGAAAA 404
Query 1019 TATGGGTCAAATCTT-AGAACAAGAGCTCTT-TCAAATGAAAGCTTTCCGGATGCTCTCA 1076
||||||||||| || |||||||||||| || ||||||| |||||||||| |||||||||
Sbjct 405 GATGGGTCAAAT-TTCAGAACAAGAGCT-TTGTCAAATGGAAGCTTTCCGAATGCTCTCA 462
Query 1077 CTGAGATGCATGGGTCCTAGTGAAGAAGTTCCAACGATGGTGGAGGTGGCCAAAGAACTA 1136
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 463 CTGAGATGCATCGGTCCTAGTGAAGAAGTTCCAACGATGGTGGAAGTGGCCAAAGAACTT 522
Query 1137 AAGAAGATCCAAAAATCTCTTAATAAA-GATTCTT 1170
||||||||||||| ||||||| | ||| || ||||
Sbjct 523 AAGAAGATCCAAACATCTCTTCA-AAACGACTCTT 556
Score = 224 bits (121), Expect = 2e-57
Identities = 213/252 (85%), Gaps = 27/252 (11%)
Strand=Plus/Plus
Query 111 ATGGGTTGGTTGTGGAGGAAGAAGAAAAAGAATAAGAAGCTAGA-ATTGGAGAGAGGAGC 169
|||||||||| |||||||||| || ||||||||||||| | |||||||||||||||
Sbjct 1 ATGGGTTGGTGGTGGAGGAAG-AG-----GAATAAGAAGCTA-ATATTGGAGAGAGGAGC 53
Query 170 CAAGTTGTTAGAAGAGCTCATCGAATGTTG-CGATGGCAAATCCAATCCCATCAAATTCT 228
||||||||||||||| || ||||||| | | | |||||||||||||||||||||||||||
Sbjct 54 CAAGTTGTTAGAAGATCTGATCGAAT-TAGGCCATGGCAAATCCAATCCCATCAAATTCT 112
Query 229 TCTCTGCTGATGAGATCCGCAAAGCCACCAACATTTTCAGCCACTCTAATCTTGTTCATC 288
| |||||||||||||||| |||||||||||||| ||||||| ||||||||| |||| ||
Sbjct 113 TGTCTGCTGATGAGATCCTCAAAGCCACCAACAATTTCAGCGACTCTAATCGTGTT--TC 170
Query 289 AGGAAGAATTTTACTGCCAAT-GGTATTCAGGTAAGAACGAGAACCATCCCATGATACTC 347
|| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 171 -------------CT-CCGATTGGTATTCAGGTAAGAACGAGAACCATCCCATGATACTC 216
Query 348 ATCAGGAAAGAT 359
|||| |||||||
Sbjct 217 ATCAAGAAAGAT 228
> Ahg925502 jgi|Araly1|925502|scaffold_201063.1
Length=946
Score = 250 bits (135), Expect = 3e-65
Identities = 173/191 (91%), Gaps = 4/191 (2%)
Strand=Plus/Plus
Query 973 AAGACCGACCAATGGAAGAGATTGCAGATCGAAAGATGATAAAAAATATGGGTCAAATCT 1032
||||| ||| ||| ||||||||||||||| |||||||||| |||| ||||||||||| |
Sbjct 733 AAGACGGACGAATCCAAGAGATTGCAGATCCAAAGATGATAGAAAAGATGGGTCAAAT-T 791
Query 1033 T-AGAACAAGAGCTCTT-TCAAATGAAAGCTTTCCGGATGCTCTCACTGAGATGCATGGG 1090
| |||||||||||| || ||||||| |||||||||| |||||||||||||||||||| ||
Sbjct 792 TCAGAACAAGAGCT-TTGTCAAATGGAAGCTTTCCGAATGCTCTCACTGAGATGCATCGG 850
Query 1091 TCCTAGTGAAGAAGTTCCAACGATGGTGGAGGTGGCCAAAGAACTAAAGAAGATCCAAAA 1150
|||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||
Sbjct 851 TCCTAGTGAAGAAGTTCCAACGATGGTGGAAGTTGCCAAAGAATTAAAGAAGATCCAAAG 910
Query 1151 ATCTCTTAATA 1161
|||||||||||
Sbjct 911 ATCTCTTAATA 921
> Ahg338701 jgi|Araly1|338701|fgenesh1_pg.C_scaffold_2000800
Length=462
Score = 176 bits (95), Expect = 4e-43
Identities = 158/187 (84%), Gaps = 10/187 (5%)
Strand=Plus/Plus
Query 159 GAGAGAGGAGCCAAGTTGTTAGAAGAGCTCATCGAATGT-TGCGATGGCAAATCCAATCC 217
||||||||||||||||||||| |||| || ||||||| | || |||||| |||||||||
Sbjct 283 GAGAGAGGAGCCAAGTTGTTAAAAGATCTGATCGAAT-TCGGCCATGGCATATCCAATCC 341
Query 218 CATCAAATTCTTCTCTGCTGATGAGATCCGCAAAGCCACCAACAT-TTTCAGCCACTCTA 276
||||||||||||||| ||||||||||||| ||||||||||||| | ||||||| |||| |
Sbjct 342 CATCAAATTCTTCTCAGCTGATGAGATCCTCAAAGCCACCAAC-TATTTCAGCGACTCCA 400
Query 277 ATCTTGTTCATCAGGAAGAATTTTACTGCCAA-TGGTATTCAGGTAAGAACGAGAACCAT 335
|||||||| || | | || || ||| |||||||||||||||||||||||||||
Sbjct 401 ATCTTGTTTTTC---TATCACTTCCCT-TCAACTGGTATTCAGGTAAGAACGAGAACCAT 456
Query 336 CCCATGA 342
||| |||
Sbjct 457 CCC-TGA 462
Score = 169 bits (91), Expect = 8e-41
Identities = 119/132 (90%), Gaps = 4/132 (3%)
Strand=Plus/Plus
Query 155 ATTGGAGAGAGGAGCCAAGTTGTTAGA-AGAGCTCATCGAATGT-TGCGATGGCAAATCC 212
||||||||||||||||||||||||| | ||| || ||||||| | || |||||| ||||
Sbjct 57 ATTGGAGAGAGGAGCCAAGTTGTTA-ACAGATCTGATCGAAT-TCGGCCATGGCATATCC 114
Query 213 AATCCCATCAAATTCTTCTCTGCTGATGAGATCCGCAAAGCCACCAACATTTTCAGCCAC 272
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||
Sbjct 115 AATCCCATCAAATTCTTCTCTGCTGATGAGATCCTCAAAGCCACCAACAATTTCAGCGAC 174
Query 273 TCTAATCTTGTT 284
||||||| ||||
Sbjct 175 TCTAATCGTGTT 186
> Ahg907919 jgi|Araly1|907919|Al_scaffold_0002_1000
Length=471
Score = 167 bits (90), Expect = 3e-40
Identities = 168/202 (83%), Gaps = 20/202 (10%)
Strand=Plus/Plus
Query 165 GGAGCCAAGTTGTTAGAAGAGCTCATCGAATGTTGCGATGGCAAATCCAATCCCATCAAA 224
|||||||||||||||| ||| || ||||||||||||||||| |||||||||||||||| |
Sbjct 119 GGAGCCAAGTTGTTAG-AGATCTGATCGAATGTTGCGATGGAAAATCCAATCCCATCAGA 177
Query 225 TTCT-TCT-CT---G-CTGATGAGATCCGCAAAGCCACCAACATTTTCAGCCACTCTAAT 278
|||| ||| || | |||||||||||||||||| |||||||| || ||| || | |
Sbjct 178 TTCTCTCTGCTGACGTCTGATGAGATCCGCAAAGACACCAACAATTACAG-CA---GATT 233
Query 279 CTTGTTCATCAGGAAGAATTTT-ACTGCCAATGGTATTCAGGTAAGAACGAGAACCATCC 337
| || || || ||||| || | |||||||||||||||||||||||||||||||
Sbjct 234 C-TG--GAT----TAG-ATTTTCCCTTCAAATGGTATTCAGGTAAGAACGAGAACCATCC 285
Query 338 CATGATACTCATCAGGAAAGAT 359
||||||||||||||||||||||
Sbjct 286 CATGATACTCATCAGGAAAGAT 307
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63191716455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5