BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65220.1
Length=1500
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475532 jgi|Araly1|475532|fgenesh2_kg.2__662__AT1G65220.1 2159 0.0
Ahg947269 jgi|Araly1|947269|scaffold_703498.1 1266 0.0
> Ahg475532 jgi|Araly1|475532|fgenesh2_kg.2__662__AT1G65220.1
Length=1419
Score = 2159 bits (1169), Expect = 0.0
Identities = 1319/1387 (95%), Gaps = 27/1387 (2%)
Strand=Plus/Plus
Query 57 GTTTCGTCTCCGA-TTTAATCTTTCTA-CGTCTTGGTTTATGAGCTCAAAGGAGAAGCCC 114
||||||||||| | |||||||| |||| |||||||||||||||||||||||||||| |||
Sbjct 42 GTTTCGTCTCC-AGTTTAATCTCTCTAGCGTCTTGGTTTATGAGCTCAAAGGAGAAACCC 100
Query 115 ACTCTCGGAGGTACGCGGATTAAGACCCGCAAAAGGAATATTGCTGCTCCTCTCGACCCT 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 101 ACTCTCGGAGGTACGCGGATTAAGACCCGCAAAAGGAATATTGCTGCTCCTCTCGACCCT 160
Query 175 GCTGCTTTTTCTGATGCACTAGTTCAGATTTATCTGGATAATGCTGGTGATCTGGAACTT 234
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 161 GCTGCTTTTTCTGATGCTGTAGTTCAGATTTATCTGGATAATGCTGGTGATCTGGAACTT 220
Query 235 GTTGCCAGAAGTTTAGAGTCATCTGATCTTAATTTCTCAAGATACGGTGATATTTTCTTT 294
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 GTTGCCAAAAGTTTAGAGTCATCTGATCTTAATTTCTCAAGATACGGTGATATTTTCTTT 280
Query 295 GAGGTTGTTTTCATTGGAGGACGTACTCAAACTGGTTCAGTGAAATCTGATGAAGGGGAA 354
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 281 GAGGTTGTTTTCATTGGAGGACGTACACAAACTGGTTCAGTGAAATCTGATGAAGGGGAA 340
Query 355 CGCCACCCTTACTCTATAATCGACTGTGAACCAAAGCGTGAAGCTATTTTACCATCAGTT 414
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 341 CGCCACCCTTACTCTATAATCGACTGTGAACCAACGCGTGAAGCTATTTTACCATCAGTT 400
Query 415 GTATACATACAGAAAATTTTGCGGAGGAAAGCCTTCCTTATTAAGAACCTTGAGAATGTT 474
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 401 GTATACATACAGAAAATTTTGCGGAGGAAAGCCTTCCTTATTAAGAACCTTGAAAATGTT 460
Query 475 ACACGGAGATTCTTACAGTCACTGGAGCTTTTTGAGGAGAATGAGAGGAAGAAGCTTGCA 534
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 ACGCGGAGATTCTTGCAGTCACTGGAGCTTTTTGAGGAGAATGAGAGGAAGAAGCTTGCA 520
Query 535 ATATTCACAGCACTTGCATTTTCACAGAAGCTCTCAGGATTACCTGCAGAGACTGTCTTC 594
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 521 ATATTCACAGCGCTCGCATTTTCCCAGAAGCTCTCAGGATTACCTGCAGAGACTGTCTTC 580
Query 595 CAGCCATTGCTTAAGGATACTCTTGTTGCCAAAGGGATAGTTCTCAATTTTGTAACAGAC 654
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 581 CAGCCATTGCTTAAGGATAATCTTGTTGCCAAAGGGATAGTTCTCAATTTTGTAACAGAC 640
Query 655 TTCTTCAATGAATATTTGGTTGAGAACAGTCTTGATGACTTGATTTCTATTCTGAGGCGT 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 TTCTTCAATGAATATTTGGTTGAGAACAGTCTTGATGACTTGATTTCTATTCTGAGGCGT 700
Query 715 GGCAAGATGGATGACAAACTCTTGGAGTTCCTGCCACCCACAAAGCGGACTACAGAAAGT 774
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 701 GGCAAGATGGATGACAAACTCTTGGAGTTCCTGCCACCCACAAAGCGGACTACTGAAAGT 760
Query 775 TTTGCCGAGCATTTCACTAAGGCAGGATTGACAGCTCTGGTAGAGTACAATGAAAGGAAA 834
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 TTTGCCGAGCATTTCACCAAGGCAGGATTGACAGCTCTGGTAGAGTACAATGAAAGGAAA 820
Query 835 ATATTTGAGGTGAAGCTGAAGGAAATCAAAGCGGTCCTTACGAGCCAAGTGACAGAGGAA 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 ATATTTGAGGTGAAGCTGAAGGAAATCAAAGCGGTCCTTACGAGCCAAGTGACAGAGGAA 880
Query 895 ATAAACGTAGATGAAGTGACTGAAATGGTGAAGCAACAGGTGAAAGATGCAAAGCTGCCA 954
||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||
Sbjct 881 ATAAACGTAGATGAAGTGATTGAAACGGTGAAGCAACAAGTGAAAGATGCAAAGCTGCCT 940
Query 955 GAGACTGAGGTTGTGCATGTGATCTGGGATGGGATAATGAATGCTGTTCAATGGTCTGGG 1014
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 GAGATTGAGGTTGTGCATGTGATCTGGGATGGGATAATGAATGCTGTTCAATGGTCTGGG 1000
Query 1015 AAAAACCAGCAGCAGAATTCGAATGCTGTATTACGCCAAGTGAAAACATGGGCACCCCTT 1074
|||||||||||||| ||||| |||||||||||||||||||||||||||||||| || |||
Sbjct 1001 AAAAACCAGCAGCAAAATTCAAATGCTGTATTACGCCAAGTGAAAACATGGGCGCCACTT 1060
Query 1075 CTGAACACGCTGTG-TAGCACCGGGAACATGGAGATGGAACTGATGTATAAAGTACAGAT 1133
|||||||||||||| | ||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 1061 CTGAACACGCTGTGCT-GCAGCGGGAACATGGAGATGGAACTGATGTACAAAGTACAGAT 1119
Query 1134 GCAATGCTATGAGGATGCAAAGCTGATGAAAGTGTTTCCTGAGGTAGTGAGATCTCTGTA 1193
|||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1120 GCAATGCTATGAAGATGCAAAGCTGATGAAAGTGTTTCCAGAGGTAGTGAGGTCTCTGTA 1179
Query 1194 TGAACTGGATGTGCTTGCGGAAGACACCATTCTGCACTGGTATCGCAAAGGGACCAACCC 1253
|||||| |||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1180 TGAACTTGATGTGCTCGCTGAAGACACCATTCTCCACTGGTATCGCAAAGGGACCAACCC 1239
Query 1254 TAAGGGCAGGCAAACGTTTGTGAAGGGATTGGAACCGTTTGTGAATTGGCTCGAAGAGGC 1313
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1240 AAAGGGCAGGCAAGCGTTTGTGAAGGGATTGGAACCGTTTGTGAATTGGCTGGAAGAGGC 1299
Query 1314 CGAAGAAGAGGAGTGAGTGAGACGCTCTGCTTCTTGTTTTCTCTTTTTACTCTCTTCTAA 1373
|||||||||||||||||||||| | | ||| ||||||||||||
Sbjct 1300 CGAAGAAGAGGAGTGAGTGAGA---T-T--TTC---------------ACTCTCTTCTAA 1338
Query 1374 TAAAAGAAAGACAATATTTTACTTCTCTTAACGCAAAATTCAGATGCTCTACATTGTTGG 1433
||||| ||| ||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1339 TAAAACAAACACAATCTTTTACTTTTCTTAACGCAAAATTCAGATGCTCTACATTGTTGG 1398
Query 1434 TGACTTG 1440
||| |||
Sbjct 1399 TGA-TTG 1404
> Ahg947269 jgi|Araly1|947269|scaffold_703498.1
Length=1277
Score = 1266 bits (685), Expect = 0.0
Identities = 1077/1265 (85%), Gaps = 32/1265 (3%)
Strand=Plus/Plus
Query 85 TCTTGGTTTATGAGCTCAAAGGAGAAGCCCACTCTCGGAGGTACGCGGATTAAGACCCGC 144
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 13 TCTTGGTTTATGAGCTCGAAGGAGAAACCCACTCTCGGAGGTACGCGGATTAAGACCCGC 72
Query 145 AAAAGGAATATTGCTGCTCCTCTCGACCCTGCTGCTTTTTCTGATGCACTAGTTCAGATT 204
||| ||||||||||||||||||| |||||||| || |||||||||||| | || ||||||
Sbjct 73 AAACGGAATATTGCTGCTCCTCTGGACCCTGCAGCCTTTTCTGATGCAGTGGTCCAGATT 132
Query 205 TATCTGGATAATGCTGGTGATCTGGAACTTGTTGCCAGAAGT-TTAGAGTCATCTGATCT 263
|| |||||||||||||||||||||||||||||||||| |||| || |||||||| |||||
Sbjct 133 TACCTGGATAATGCTGGTGATCTGGAACTTGTTGCCAAAAGTATT-GAGTCATCAGATCT 191
Query 264 TAATTTCTCAAGATACGGTGATATTTTCTTTGAGGTTGTTTTCATTGGAGGACGTACTCA 323
||||||| ||||||| ||||| || |||||||||||||||||||| |||||||| || ||
Sbjct 192 TAATTTCACAAGATATGGTGACATCTTCTTTGAGGTTGTTTTCATAGGAGGACGCACACA 251
Query 324 AACTGGTTCAGTGAAATCTGATGAAGGGGAACGCCACCCTTACTCTATAATCGACTGTGA 383
| |||| |||||||||||||||||||||||||||| | |||||| |||| ||||||||
Sbjct 252 AGCTGGAACAGTGAAATCTGATGAAGGGGAACGCCATACGTACTCTGTAATTGACTGTGA 311
Query 384 ACCAAAGCGTGAAGCTATTTTACCATCAGTTGTATACATACAGAAAATTTTGCGGAGGAA 443
||| | ||||||||| ||||| || || ||||| ||||||||||||||| ||||||||||
Sbjct 312 ACCCAGGCGTGAAGCCATTTTGCCGTCTGTTGTCTACATACAGAAAATTCTGCGGAGGAA 371
Query 444 AGCCTT-CCTTATTAAGAACCTTGAGAATGTTACACGGAGATTCTTACAGTCACTGGAGC 502
||||| ||| || ||||||||||| |||||||| ||||||||| | |||||||||||||
Sbjct 372 -GCCTTTCCTCATAAAGAACCTTGAAAATGTTACCCGGAGATTCCTGCAGTCACTGGAGC 430
Query 503 TTTTTGAGGAGAATGAGAGGAAGAAGCTTGCAATATTCACAGCACTTGCATTTTCACAGA 562
|||||||||| || || |||||||||||||| || |||||||||||||| ||||| ||||
Sbjct 431 TTTTTGAGGAAAACGAAAGGAAGAAGCTTGCTATCTTCACAGCACTTGCCTTTTCCCAGA 490
Query 563 AGCTCTCAGGATTACCTGCAGAGACTGTCTTCCAGCCATTGCTTAAGGATACTCTTGTTG 622
||||||||||||||||| | || ||||| |||||||||||||| ||||||| ||||||||
Sbjct 491 AGCTCTCAGGATTACCTCCGGAAACTGTTTTCCAGCCATTGCTCAAGGATAATCTTGTTG 550
Query 623 CCAAAGGGATAGT--TCTCAATTTTGTAACAGACTTCTTCAATGAATATTTGGTTGAGAA 680
||||||||||||| ||||| || ||||||||||||||||| || ||||||||||||||
Sbjct 551 CCAAAGGGATAGTGCTCTCA-TTC-GTAACAGACTTCTTCAAGGAGTATTTGGTTGAGAA 608
Query 681 CAGTCTTGATGACTTGATTTCTATTCTGAGGCGTGGCAAGATGGATGACAAACTCT-TGG 739
||||||||| |||||||| ||||||||||||||||| || ||||| ||||| || | |||
Sbjct 609 CAGTCTTGAAGACTTGATCTCTATTCTGAGGCGTGGAAAAATGGAAGACAACCT-TATGG 667
Query 740 AGTTCCTGCCACCCACAAAGCGGA-CTACAGAAAGTTTTGCCGAGCATTTCACTAAGGCA 798
| ||||| ||||| | ||| | || | ||||||||||| || |||||||| || | |
Sbjct 668 ATTTCCTACCACCTGTTAGGCG-ATCTGCTGAAAGTTTTGCGGAACATTTCACGAATG-A 725
Query 799 GG-ATTGACAGCTCTGGTAGAGTACAATG-AAAGGAAAATATTTGAGGTGAAGCTGAAGG 856
|| |||||| | ||| ||||| ||| || |||| ||||| ||||||||||| || ||||
Sbjct 726 GGGATTGACCGATCTAGTAGAATACCATTCAAAG-AAAATGTTTGAGGTGAAACTAAAGG 784
Query 857 AAATCAAAGCGGTCCTTACGAGCCAAG-TGACAGAGGAAA-TAAACGTAGATGAAGTGAC 914
|||||||| | || ||||| ||| ||| | |||||||||| ||| || || ||||| |
Sbjct 785 AAATCAAAACCGTTCTTACAAGC-AAGGTCACAGAGGAAAGTAAT-GTCGACGAAGTCAT 842
Query 915 TGAAAT-GGTGAAGCAACAGGTGAAAGATGCAAAGCTGCCAGAGACTGAGGTTGTGCATG 973
|||| | ||||||||||||| | ||||| || ||| |||| || | ||| ||||||| ||
Sbjct 843 TGAA-TCGGTGAAGCAACAGATCAAAGAAGCTAAGATGCCTGACATTGAAGTTGTGCGTG 901
Query 974 T-GATCTGGGATGGGATAATGAATGCTGTTCAATGGTCTGGGAAAAACCAGCAGCAGAAT 1032
| | | |||||||| ||||| |||||||||| |||||||| |||||||||||||| |||
Sbjct 902 TCGTT-TGGGATGGTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAACCAGCAGCAAAAT 960
Query 1033 TCGAATGCTGTAT-TACGCCAAGTGAAAACATGGGCACCCCTTCTGAACACGCTGTGTAG 1091
| ||| |||| | | ||||| |||||||||||||| || |||||||||||| | ||||
Sbjct 961 GCAAATTCTGT-TCTGCGCCAGGTGAAAACATGGGCTCCGCTTCTGAACACGTTCTGTAC 1019
Query 1092 CACCGGGAA-CATGGAGATGGAACTGATGTATAAAGTACAGATGCAATGCTATGAGGATG 1150
|| ||| || | | ||| ||||||||||||| ||||| || |||||||||||||||||||
Sbjct 1020 CAGCGGAAAGC-TAGAGCTGGAACTGATGTACAAAGTCCAAATGCAATGCTATGAGGATG 1078
Query 1151 CAAAGCTGATGAAAGTGTTTCCT-GAGGTAGTGAGATCTCTGTATGAACTGGATGTGCTT 1209
||||||| |||||||| ||||| || |||||||| || || |||||||| ||||| ||
Sbjct 1079 CAAAGCTTATGAAAGT-TTTCCCAGAAGTAGTGAGGTCGCTCTATGAACTCGATGTACTC 1137
Query 1210 GCGGAAGACACCATTCTGCACTGGTATC-GCAAAGGGACCAACCCTAAGGGCAGGCAAAC 1268
|| |||||||||||||| ||||||| || | ||||| || ||| | ||||||||||||||
Sbjct 1138 GCTGAAGACACCATTCTCCACTGGT-TCCGTAAAGGAACAAACTCAAAGGGCAGGCAAAC 1196
Query 1269 GTTTGTGAAGGGATTGGAACCGTTTGTGAATTGGCTCGAAGAGGCCGAAGAAGAGGAGTG 1328
|||||||| | || || || |||||||||||||| |||||||| || ||||| |||||
Sbjct 1197 CTTTGTGAAAAGCTTAGAGCCATTTGTGAATTGGCTTGAAGAGGCGGAGGAAGAAGAGTG 1256
Query 1329 AGTGA 1333
|||||
Sbjct 1257 AGTGA 1261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56145021130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5