BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65230.1
Length=1018
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475533 jgi|Araly1|475533|fgenesh2_kg.2__663__AT1G65230.1 1685 0.0
> Ahg475533 jgi|Araly1|475533|fgenesh2_kg.2__663__AT1G65230.1
Length=1017
Score = 1685 bits (912), Expect = 0.0
Identities = 983/1018 (97%), Gaps = 1/1018 (0%)
Strand=Plus/Plus
Query 1 ATAATGGAAATACACTCCGATGACTACTTCTTCCTTCCTCCTCCCTGCTTCTCCTCCCTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATAATGGAAATACACTCCGATGACTACTTCTTCCTTCCTCCTCCCTGCTTCTCCTCCCTC 60
Query 61 AGCCGCCTTTCTCCGGCGGCGCTTCTTCCGCCACTCCTGGCTTTCCTCTAAGATCCACCA 120
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 61 AGCCGCCTTTCTCCGGCGGCGCTTCTTCCGTCACTCTTGGCTTTCCTCTAAGATCCACCA 120
Query 121 CCGTCTTCCCCAAGTTATGAATGATTCCACGAGGACTGAAGTATCCATTGATAAATCAGA 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 121 CCGTCTTCCCCAAGTTATGAATGATTCCACCAGGACTGAAGTATCCATTGATAAATCAGA 180
Query 181 AGTAGACAAGCTTGTTGACAAGATTGATTTTGGGGAATTATGCAACGATTTTGAGTGCAC 240
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 181 AGTAGACAAGCTTGTTGACAGGATTGATTTTGGGGAATTATGCAATGATTTTGAGTGCAC 240
Query 241 AAGTAGTCCGCAGGTGGAATCCACAGCTAGACAACTTGTTCGCGACATTCTTGAAATCAG 300
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAGTAGCCCGCAAGTGGAATCCACAGCTAGACAACTTGTTCGCGACATTCTTGAAATCAG 300
Query 301 AGAAGGAAATCGTGCCTTTGCATGCTATGCAGTTTCCGTTAAATATAAGGATCCGGTTAG 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGAAGGAAATCGTGCCTTTGCATGCTATGCAGTTTCCGTTAAATATAAGGATCCGGTTAG 360
Query 361 AAGTTTTACAGGTCGTGAGAAGTACAAAAGACCAATGTGGATAACTAGTGGATTAGAGAA 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 361 AAGTTTTACAGGTCGTGAGAAGTATAAAAGACCAATGTGGATAACTAGTGGATTAGAGAA 420
Query 421 TCCTACCGTGACGGTACAAGAGATGGTAATGTTATCGACCAGCGTCTTGCGAATTAAATG 480
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 421 TCCTACCGTGACGGTACAGGAGATGGTAATGTTATCGACCAGCGTCTTGCGTATTAAATG 480
Query 481 GACAGTGAAAGGAAAACCAAAATCTATTCTTGCTGCTGTAAGTGGAGATTTGATAGTAAA 540
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||| | ||
Sbjct 481 GACAGTCAAAGGAAAACCCAAATCTATTCTTGCTGCTGTAAGTGGAGATTTGATAATCAA 540
Query 541 AGTCAAATCTGAATTTACTCTTAACCAGATTAGTGGGCAAGTGTTTGAGCATGAAGAGTC 600
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 541 AGTCAAATCTGAATTTACTCTTAACCAGATTAGTGGCCAAGTGATTGAGCATGAAGAGTC 600
Query 601 TTGGGACTTATCTTCATCATCCCCTATTGCTCAAGCCTATTTCTGGACATCCCGCCGCCT 660
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 601 TTGGGACTTATCTTCATCATCCCCTATTGCACAAGCCTATTTCTGGACATCCCGCCGCCT 660
Query 661 CTTTGCTGCTTCTGAATCCGCAAAAGATGTCGCCGATGTCACAAAAGACTTGACCGCCAA 720
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 661 CTTTGCTGCTTCTGAATCCGCAAAAGATTTATCCGATGTCACAAAAGACTTGACCGCCAA 720
Query 721 TTTGACAACTCGAAAAGAGGACACAGATATATATCGCGATCCAACCGATCCAAATAAGTT 780
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTTGACAACTCGAACAGAGGACACAGATATATATCGCGATCCAACCGATCCAAATAAGTT 780
Query 781 TTTCCAAAGAGACAACAGCTTTGAGAGAGATGTGTATCAAATTGCACTGTTTCTAGCCAT 840
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TTTCCAAAGAGACGACAGCTTTGAGAGAGATGTGTATCAAATTGCACTGTTTCTAGCCAT 840
Query 841 TGTCTATTTTGTTGTACAGTTCTTGAAGAACACAATCTAGTTACCTTCTCTCCCATCCTC 900
||||||||||||||||| ||||||||||||||| |||||||||| | ||||||||||||
Sbjct 841 TGTCTATTTTGTTGTACTGTTCTTGAAGAACACTCTCTAGTTACCCTATCTCCCATCCTC 900
Query 901 TATAACAGATATGTAAATGCCTATATATTGTTGTATATGATCTGTaaaaaaaaaCTGAAC 960
||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||
Sbjct 901 TATAACAGATATGTAAATGCCTATATACTGTTGTATATGATCTGTATAAAAAA-CTGAAC 959
Query 961 AAGAAAAGAGATGTGTTTGTTTGTGTTGGAAGAAAGACTATCAAAATGATTAAATCTT 1018
||||||||| |||||||||||||||||||||| |||||||| ||||||||| ||||||
Sbjct 960 AAGAAAAGATATGTGTTTGTTTGTGTTGGAAGGAAGACTATTAAAATGATTTAATCTT 1017
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37856056581
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5