BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65240.1
Length=1524
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315487 jgi|Araly1|315487|fgenesh1_pm.C_scaffold_2000520 2261 0.0
> Ahg315487 jgi|Araly1|315487|fgenesh1_pm.C_scaffold_2000520
Length=1422
Score = 2261 bits (1224), Expect = 0.0
Identities = 1360/1426 (95%), Gaps = 7/1426 (0%)
Strand=Plus/Plus
Query 1 ATGGAACTGAGGAGAAAATTGTGCATTGTGGTTGCAGTTTTCGTAATTGTGATCGAATTT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATGGAACTGAGGAGAAAATTGTGCATTGTGGTTGCAGTTTTCGTAATTGTGAACGAATTT 60
Query 61 GCATCAGCCAATTTCGTGTTTAAGGCACAACACAAGTTCGCAGGG-AAGAAGAAGAACCT 119
||||||| ||||||||||||||||| ||||||||||||||||||| ||| ||||||| ||
Sbjct 61 GCATCAGGCAATTTCGTGTTTAAGGTACAACACAAGTTCGCAGGGAAAG-AGAAGAAGCT 119
Query 120 CGAGCATTTCAAGTCTCATGACACGCGCCGCCACTCTCGGATGCTCGCTTCCATTGATCT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CGAGCATTTCAAGTCTCATGACACGCGCCGCCACTCTCGGATGCTCGCTTCCATTGATCT 179
Query 180 CCCTCTTGGCGGAGACAGCCGCGTAGACTCTGTCGGTTTATACTTCACTAAAATCAAGCT 239
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 180 CCCTCTTGGCGGAGACAGCCGCGTAGACTCTGTCGGATTATACTTCACTAAAATCAAGCT 239
Query 240 AGGGTCGCCACCAAAGGAATATCATGTACAAGTTGATACAGGAAGTGATATACTTTGGAT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 240 CGGGTCGCCACCAAAGGAATATCATGTACAAGTTGATACAGGAAGTGATATACTTTGGGT 299
Query 300 AAATTGCAAGCCGTGTCCAAAATGTCCCACGAAAACTAATTTGAATTTTCGTTTATCGTT 359
|||||||||||||||||| |||||||| ||||||||||||||||||| | |||||||||
Sbjct 300 CAATTGCAAGCCGTGTCCAGAATGTCCCTCGAAAACTAATTTGAATTTCCATTTATCGTT 359
Query 360 GTTCGACATGAATGCTTCTTCGACTTCGAAGAAGGTTGGTTGTGATGATGATTTTTGCTC 419
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 GTTCGACGTGAATGCTTCTTCGACTTCAAAGAAGGTTGGTTGTGATGATGATTTTTGCTC 419
Query 420 TTTCATTTCGCAATCGGATAGCTGTCAACCCGCTCTTGGATGTAGTTATCACATTGTCTA 479
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 420 TTTCATTTCGCAATCGGATAGCTGCCAACCCGCTGTTGGATGTAGTTATCACATTGTCTA 479
Query 480 TGCGGACGAAAGCACAAGTGATGGAAAGTTTATAAGGGACATGTTAACACTTGAACAAGT 539
|||||| || || |||||||| || || ||||||||||||| |||||| || ||||||||
Sbjct 480 TGCGGATGAGAGTACAAGTGAAGGTAACTTTATAAGGGACAAGTTAACTCTAGAACAAGT 539
Query 540 TACTGGCGATCTTAAAACTGGACCACTTGGTCAAGAAGTTGTATTCGGGTGTGGAAGTGA 599
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TACTGGAGATCTTCAAACTGGACCACTTGGTCAAGAAGTTGTATTCGGGTGTGGAAGTGA 599
Query 600 TCAATCTGGACAACTTGGGAATG-GTGACTCAGCAGTTGATGGTGTTATGGGATTTGGGC 658
||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||| |
Sbjct 600 TCAATCTGGACAACTTGGGAA-GAGTGACTCAGCAGTTGATGGTGTTATGGGTTTTGGAC 658
Query 659 AATCAAATACCTCTGTCCTTTCACAACTAGCTGCCACGGGCGATGCGAAAAGAGTTTTTT 718
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AATCAAATACCTCTGTTCTTTCACAACTAGCTGCCACGGGCGATGCGAAAAGAGTTTTTT 718
Query 719 CGCATTGCTTGGATAATGTTAAAGGAGGTGGGATTTTTGCTGTTGGTGTAGTGGATTCTC 778
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 719 CGCATTGCTTGGATAATGTTAAAGGAGGTGGGATTTTTGCTGTTGGTGTTGTGGATTCTC 778
Query 779 CAAAAGTTAAAACAACTCCTATGGTACCTAATCAGATGCATTACAATGTAATGTTGATGG 838
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CAAAAGTTAAAACAACCCCTATGGTACCTAATCAGATGCATTACAATGTAATGTTGATGG 838
Query 839 GAATGGATGTGGATGGAACTTCTCTTGACCTTCCACGAAGTATTGTGAGGAACGGAGGAA 898
|||||||||||||||||||| | ||||||||||||| ||||||| |||||||||||||||
Sbjct 839 GAATGGATGTGGATGGAACTGCCCTTGACCTTCCACCAAGTATTATGAGGAACGGAGGAA 898
Query 899 CCATTGTTGATAGTGGTACAACTTTGGCTTACTTTCCAAAGGTTCTTTATGACTCCTTAA 958
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 899 CCATTGTTGATAGTGGTACAACTTTGGCTTACTTTCCAAAGGTTCTTTATGACTCCCTAA 958
Query 959 TAGAAACGATTCTTGCTCGTCAACCTGTAAAACTTCACATAGTAGAGGAGACCTTCCAAT 1018
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 959 TAGAAACGATTCTTGCTCGTCAACCTGTAAAACTTCACATAGTAGAGGACACCTTCCAAT 1018
Query 1019 GTTTTAGCTTTAGT-ACAAACGTGGATGAGGCGTTCCCACCAGTAAGTTTTGAGTTTGAG 1077
|||| ||||||||| | ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1019 GTTTCAGCTTTAGTGA-AAACGTGGATGTGGCGTTCCCACCAGTAAGTTTTGAGTTTGAG 1077
Query 1078 GACTCTGTCAAACTAACCGTTTATCCGCATGATTATCTTTTCACACTTGAGGAAGAGTTG 1137
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1078 GACTCTGTCAAACTAACCGTTTATCCGCATGATTATCTTTTCACACTTGAGAAAGAGTTG 1137
Query 1138 TACTGCTTTGGTTGGCAAGCTGGTGGACTGACAACAGATGAAAGATCAGAAGTCATTCTC 1197
||||||||||||||||||||||||||||||||||| | ||||||| ||||||| ||||||
Sbjct 1138 TACTGCTTTGGTTGGCAAGCTGGTGGACTGACAACTGGTGAAAGAACAGAAGTGATTCTC 1197
Query 1198 TTAGGAGATTTGGTGCTCTCGAACAAGTTAGTAGTATACGATCTGGATAACGAGGTGATC 1257
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1198 TTAGGAGACTTGGTGCTCTCGAACAAGTTAGTAGTATACGATCTGGAAAACGAGGTGATC 1257
Query 1258 GGATGGGCAGATCATAACTGTTCATCAAGCATCAAAATAAAAGACGGATCAGGAGGTGTT 1317
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1258 GGATGGGCAGATCACAACTGTTCATCAAGCATCAAAATAAAAGACGGATCGGGAGGAGTA 1317
Query 1318 TACTCGGTCGGCGCAGACAATCTCTCATCGGCTCCTCGTTTGTTGATGATCACAAAGCTT 1377
||||||||||| |||||||| |||||||| || |||| ||||||||||||||||||||||
Sbjct 1318 TACTCGGTCGGAGCAGACAACCTCTCATCAGCGCCTCCTTTGTTGATGATCACAAAGCTT 1377
Query 1378 CTTACAATTTTGTCACCATTGATCGTAATGGCTTTTACTTCCTTAG 1423
||||||||||||||||||||||||| | ||||||| ||||| ||||
Sbjct 1378 CTTACAATTTTGTCACCATTGATCGCAGTGGCTTT-ACTTCATTAG 1422
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57059187010
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5