BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65250.1
Length=1471
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315482 jgi|Araly1|315482|fgenesh1_pm.C_scaffold_2000515 756 0.0
Ahg925419 jgi|Araly1|925419|scaffold_200980.1 734 0.0
Ahg917565 jgi|Araly1|917565|Al_scaffold_0008_2316 287 2e-76
Ahg925502 jgi|Araly1|925502|scaffold_201063.1 268 6e-71
Ahg338701 jgi|Araly1|338701|fgenesh1_pg.C_scaffold_2000800 163 3e-39
> Ahg315482 jgi|Araly1|315482|fgenesh1_pm.C_scaffold_2000515
Length=1137
Score = 756 bits (409), Expect = 0.0
Identities = 633/736 (86%), Gaps = 35/736 (5%)
Strand=Plus/Plus
Query 143 GAGAGAGGGGCCAAGTTGTTAG-AAGAGCTCATCGAATGT-TGCGATGGCAAATCCAATC 200
||||||||||| | | |||| | |||| || ||||||| | || |||||| ||||||||
Sbjct 43 GAGAGAGGGGCGATGGTGTT-GAAAGATCTGATCGAAT-TAGGCCATGGCATATCCAATC 100
Query 201 CCATCAAATTCTTCTCTGCTGATGAGATCCTCAAAGCCACCAACGATTTCAGCGACTCTA 260
|||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||
Sbjct 101 CCATCAAATTCTTCTCTGCTGATGAGATCCTCAAAGCCACCAACAATTTCAGCAAATCTA 160
Query 261 ATTTTGTTTT-ACGATTAGA--AGTTCCCTTCAAATGGTATTCTGGTAAGAACGAGAATC 317
|| |||||| | |||||| | || | | | | |||||||| |||||||||||||| |
Sbjct 161 ATCATGTTTTTA-GATTAGCTTA-TTAC-TCCGATTGGTATTCAGGTAAGAACGAGAACC 217
Query 318 ATCCCATGATACTAATCAAGAAA-GATGTTGGCTGGTGGAGTGGCTTGAG-AGTAGATCG 375
||||||||||||| ||||||||| | || | ||| ||||| |||||| | |||||
Sbjct 218 ATCCCATGATACTCATCAAGAAACG-TGCTCGCTTTTGGAG---CTTGAGGAC-AGATC- 271
Query 376 TT-TGTGCCGCGACATAGCAGTTTCATCGATGGTGAGTGGTCACAAAAACTTCATGAAGT 434
|| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 272 TTATGTGCCGGGACATAGCAGTTTCATCGATGGTGAGTGGTCACAAAAACTTTTTGAAAT 331
Query 435 TGGTTGGATGTTGTCTTGAGTTAGATTATCCAGTCATGGTGTATCATAGTGTTAAGAAAC 494
|||||||||||||||||||||| || | |||||| |||| |||||| |||| |||||||
Sbjct 332 TGGTTGGATGTTGTCTTGAGTTGGAAAAGCCAGTCTTGGTTTATCATGGTGTAAAGAAAC 391
Query 495 ATTA-CAAATTAGA-AATAAGTGAACAGCCATGGAAAAAGAGAATGAAGATAGCAGAAGA 552
|||| ||| ||| | ||||||||| ||| | ||||||| |||||||||||||||||||||
Sbjct 392 ATTATCAA-TTA-ATAATAAGTGAGCAGACGTGGAAAAGGAGAATGAAGATAGCAGAAGA 449
Query 553 TATCGCTACTGCTTTAGCTTACCTTCACACCGCCTTCCCTAGGCCCTTTGTATATAGGAT 612
|||||||||||||||||||||||||||||| || |||||||||||||| ||||||| ||
Sbjct 450 TATCGCTACTGCTTTAGCTTACCTTCACACTGCGTTCCCTAGGCCCTTCGTATATACGAG 509
Query 613 TTTGTCTCATTG-GAATATCTTATTGGATGAAGATGGTGTCGCCAAGCTGACTGATTTCT 671
||||||| |||| |||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 510 TTTGTCT-ATTGAGAATATCTTATTGGATGAAGATGGGGTCGCCAAGCTGATTGATTTCT 568
Query 672 CTCACTGCGTCTCAATCCCAGAAGGAGAAACATTTGTCCGGGTTGACAGAGACG-TGGG- 729
||| ||||||||||||||||||||||||||||||||||| |||||||||||| | |
Sbjct 569 CTCTCTGCGTCTCAATCCCAGAAGGAGAAACATTTGTCCAGGTTGACAGAGAAGATATCT 628
Query 730 -ATTATATAGTTACTTTG-CTGATAATTACGTTA-G-G-AGTGGCCTAGTCTCAGATAAA 784
||||||||||||||| | | |||| |||| | | | | |||||| |||||||||| |||
Sbjct 629 TATTATATAGTTACTTGGAC-GATAGTTACATGATGAGCAGTGGCGTAGTCTCAGAGAAA 687
Query 785 ACAGATGTCTTTGCCTTTGGAATCTTTATGGGTC-ATAGGCTTCTATTAGGATACGAATA 843
||||||||||||||||||||||| |||||||||| || | |||||||||||| || ||||
Sbjct 688 ACAGATGTCTTTGCCTTTGGAATGTTTATGGGTCTATCG-CTTCTATTAGGAAACCAATA 746
Query 844 CTATTTCGAGCATTAT 859
||||| ||| |||||
Sbjct 747 TTATTTTGAGTATTAT 762
Score = 320 bits (173), Expect = 2e-86
Identities = 219/240 (91%), Gaps = 7/240 (3%)
Strand=Plus/Plus
Query 912 ATGCTCGGA-ATTTGCTCTCAACATTAAAGGAAGACAGACCAATGGAAGAGATTGCAGAT 970
||||| ||| ||| ||| |||| ||||||||||||| ||| ||||||||||||||||||
Sbjct 761 ATGCT-GGATATTGGCTGTCAAAATTAAAGGAAGACCGACGAATGGAAGAGATTGCAGA- 818
Query 971 TC-AAAGATGATAGAAAAGATGGGTCAAATTTCAGAACAAGAGCGTTGTCAAATGAAAGC 1029
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 819 TCGAAAGATGATAGAAAAGATGGGTCAAATTTCAGAACAAGAGCTTTGTCAAATGGAAGC 878
Query 1030 TTTCTTGAA-GCTATCACTGAGATGCACCGGCCCTAGTGAAGAAGTTCCAACGATGGTGG 1088
|||| ||| ||| ||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 879 TTTC-CGAATGCTCTCACTGAGATGCATCGGTCCTAGTGAAGAAGTTCCAACGATGGTGG 937
Query 1089 AAGTGGCCAAAGAACTAAACAAGATTCAAAGATCTCTTTTTAACGACTCTTCTTCT-CTT 1147
||||||||||||||||||| |||||||||| |||||||| |||||||||||||||| |||
Sbjct 938 AAGTGGCCAAAGAACTAAAGAAGATTCAAACATCTCTTTATAACGACTCTTCTTCTACTT 997
> Ahg925419 jgi|Araly1|925419|scaffold_200980.1
Length=1126
Score = 734 bits (397), Expect = 0.0
Identities = 668/790 (85%), Gaps = 54/790 (7%)
Strand=Plus/Plus
Query 76 TTAATTCTTAGATTTTGAGATGGGTTGGCT---G-AG--GAAGAAGAAGAAGCCAAAATC 129
||||||||||||||||||||||| |||||| | || |||||||||||||||||||||
Sbjct 2 TTAATTCTTAGATTTTGAGATGGATTGGCTGAGGAAGAAGAAGAAGAAGAAGCCAAAATC 61
Query 130 CGATATAGCGTCCG----A------GAGAG-GG-GCCAAGTTGTTAGA-AGAGCTCATCG 176
|||| ||| ||||| | ||||| || |||||||||||| | ||| || ||||
Sbjct 62 CGATGTAGTGTCCGATATAGTGTCTGAGAGAGGAGCCAAGTTGTTA-ACAGATCTGATCG 120
Query 177 AATGT-TGCGATGGCAAATCCAATCCCATCAAATTCTTCTCTGCTGATGAGATCCTCAAA 235
||| | || |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAT-TCGGCCATGGCATATCCAATCCCATCAAATTCTTCTCTGCTGATGAGATCCTCAAA 179
Query 236 GCCACCAACGATTTCAGCGAC-TCTAATTTTGTTT-TACGATTAGA--AGTTCCCTTCAA 291
||||||||| ||||||||||| | |||| ||||| | ||||||| | || | | | |
Sbjct 180 GCCACCAACAATTTCAGCGACAT-TAATCGTGTTTCT-CGATTAGCTTA-TTAC-TCCGA 235
Query 292 ATGGTATTCTGGTAAGAACGAGAATCATCCCATGATACTAATCAAGAAAGATGTTGGCTG 351
|||||||| |||||||||||||| |||||||||||||| |||||||||| || | ||
Sbjct 236 TTGGTATTCAGGTAAGAACGAGAACCATCCCATGATACTCATCAAGAAAGGTGCTAACTT 295
Query 352 GTGGAGTGGCTTGAGAGTAGATCGTTTGTGCCGCGACATAGCAGTTTCATCGATGGTGAG 411
||||| || ||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 296 TTGGAG---CTCGAGAGTAGATCTTTTGTGCCGGGACATAGCAGTTTCATCGATGGTGAG 352
Query 412 TGGTCACAAAAACTTCATGAAGTTGGTTGGATGTTGTCTTGAGT-TAGATTATCCAGTCA 470
||||||||||||||| |||| |||||||||||||||||||||| | || | |||||||
Sbjct 353 TGGTCACAAAAACTTTTTGAAATTGGTTGGATGTTGTCTTGAGTCT-GAAGAGCCAGTCA 411
Query 471 TGGTGTATCATAGTGTTAAGAAACATTA-CAAATTAGAAATA-AGTGAACAGCCATGGAA 528
|||| ||| | ||||||||||||| || | | ||||| ||| | ||| ||||| |||||
Sbjct 412 TGGTTTATAACGGTGTTAAGAAACACTATCGA-TTAGATATAGA-TGAGCAGCCGTGGAA 469
Query 529 AAAGAGAATGAAGATAGCAGAAGATATCGCTACTGCTTTAGCTTACCTTCACACCGCCTT 588
|| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 470 AAGGAGAATGAAGATAGCAGAAGATATCGCTACTGCTTTTGCTTACCTTCACACTGCCTT 529
Query 589 CCCTAGGCCCTTTGTATATAGGATTTTGTCTCATTGGAATATCTTATTGGATGAAGATGG 648
||| |||||||| |||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 530 CCCAAGGCCCTTCGTATATAGGATTTTGTATCCTTGGAATATCTTATTGGATGAAGATGG 589
Query 649 TGTCGCCAAGCTGACTGATTTCTCTCACTGCGTCTCAATCCCAGAAGGAGAAACATTTGT 708
||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 590 GGTCGCGAAGCTGACTGATTTCTCTCTCTGCGTCTCAATCCCAGAAGGAGAAACATTTGT 649
Query 709 CCGGGTTGACAGAGACGTGG-GATTA-TATAGTTACTTTGCTGATAATTACGTTAGGAGT 766
|||||||| || | | | ||| | | || | ||| | || | ||| ||| |||
Sbjct 650 TAAGGTTGACAAAGTC-TACAG-TTACT-T-GT-A-TTT--T--TA-TGACGATAGCAGT 698
Query 767 GGCCTAGTCTCAGATAAAACAGATGTCTTTGCCTTTGGAATCTTTATGGGTCATAG-GCT 825
||| |||| ||||| |||||||||||||||||||||||||| |||||||||| || |||
Sbjct 699 GGCGTAGTATCAGAGAAAACAGATGTCTTTGCCTTTGGAATGTTTATGGGTC-TAACGCT 757
Query 826 TCTATTAGGA 835
||||||||||
Sbjct 758 TCTATTAGGA 767
> Ahg917565 jgi|Araly1|917565|Al_scaffold_0008_2316
Length=603
Score = 287 bits (155), Expect = 2e-76
Identities = 200/222 (90%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 929 TCAACATTAAAGGAAGACAGACCAATGGAAGAGATTGCAGATTCAAAGATGATAGAAAAG 988
|||| ||||||||||||| ||| ||| ||||||||||||||| || ||||||||||||||
Sbjct 346 TCAAAATTAAAGGAAGACCGACGAATCGAAGAGATTGCAGATCCAGAGATGATAGAAAAG 405
Query 989 ATGGGTCAAATTTCAGAACAAGAGCGTTGTCAAATGAAAGCTTTCTTGAA-GCTATCACT 1047
||||||||||||||||||||||||| |||||||||| |||||||| ||| ||| |||||
Sbjct 406 ATGGGTCAAATTTCAGAACAAGAGCTTTGTCAAATGGAAGCTTTC-CGAATGCTCTCACT 464
Query 1048 GAGATGCACCGGCCCTAGTGAAGAAGTTCCAACGATGGTGGAAGTGGCCAAAGAACTAAA 1107
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 465 GAGATGCATCGGTCCTAGTGAAGAAGTTCCAACGATGGTGGAAGTGGCCAAAGAACTTAA 524
Query 1108 CAAGATTCAAAGATCTCTTTTTAACGACTCTTCTTCTCTTTC 1149
||||| |||| ||||||| |||||||||||||||| |||
Sbjct 525 GAAGATCCAAACATCTCTTCAAAACGACTCTTCTTCTCCTTC 566
Score = 200 bits (108), Expect = 2e-50
Identities = 190/226 (84%), Gaps = 20/226 (9%)
Strand=Plus/Plus
Query 143 GAGAGAGGGGCCAAGTTGTTAGAAGAGCTCATCGAATGT-TGCGATGGCAAATCCAATCC 201
|||||||| ||||||||||||||||| || ||||||| | || ||||||||||||||||
Sbjct 43 GAGAGAGGAGCCAAGTTGTTAGAAGATCTGATCGAAT-TAGGCCATGGCAAATCCAATCC 101
Query 202 CATCAAATTCTTCTCTGCTGATGAGATCCTCAAAGCCACCAACGATTTCAGCGACTCTAA 261
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 102 CATCAAATTCTTGTCTGCTGATGAGATCCTCAAAGCCACCAACAATTTCAGCGACTCTAA 161
Query 262 TTTTGTTTTACGATTAGAAGTTCCCTTCAAATGGTATTCTGGTAAGAACGAGAATCATCC 321
| || | || | || | | | |||||||| |||||||||||||| |||||
Sbjct 162 TC--GT-----G-TT-----T-CC-TCCGATTGGTATTCAGGTAAGAACGAGAACCATCC 206
Query 322 CATGATACTAATCAAGAAAGATGTTGGCTGGTGGAGTGGCTTGAGA 367
||||||||| ||||||||||||||||||| || | | ||||||||
Sbjct 207 CATGATACTCATCAAGAAAGATGTTGGCTTGT--A-TAGCTTGAGA 249
> Ahg925502 jgi|Araly1|925502|scaffold_201063.1
Length=946
Score = 268 bits (145), Expect = 6e-71
Identities = 192/214 (90%), Gaps = 6/214 (3%)
Strand=Plus/Plus
Query 941 GAAGACAGACCAATGGAAGAGATTGCAGATTCAAAGATGATAGAAAAGATGGGTCAAATT 1000
|||||| ||| ||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 732 GAAGACGGACGAATCCAAGAGATTGCAGATCCAAAGATGATAGAAAAGATGGGTCAAATT 791
Query 1001 TCAGAACAAGAGCGTTGTCAAATGAAAGCTTTCTTGAA-GCTATCACTGAGATGCACCGG 1059
||||||||||||| |||||||||| |||||||| ||| ||| ||||||||||||| |||
Sbjct 792 TCAGAACAAGAGCTTTGTCAAATGGAAGCTTTCC-GAATGCTCTCACTGAGATGCATCGG 850
Query 1060 CCCTAGTGAAGAAGTTCCAACGATGGTGGAAGTGGCCAAAGAACTAAACAAGATTCAAAG 1119
|||||||||||||||||||||||||||||||| ||||||||| |||| ||||| |||||
Sbjct 851 TCCTAGTGAAGAAGTTCCAACGATGGTGGAAGTTGCCAAAGAATTAAAGAAGATCCAAAG 910
Query 1120 ATCTCTT--T-T-TAACGACTCTTCTTCTCTTTC 1149
||||||| | | ||||||||||||||||| |||
Sbjct 911 ATCTCTTAATATGTAACGACTCTTCTTCTCCTTC 944
> Ahg338701 jgi|Araly1|338701|fgenesh1_pg.C_scaffold_2000800
Length=462
Score = 163 bits (88), Expect = 3e-39
Identities = 116/129 (90%), Gaps = 4/129 (3%)
Strand=Plus/Plus
Query 143 GAGAGAGGGGCCAAGTTGTTAGA-AGAGCTCATCGAATGT-TGCGATGGCAAATCCAATC 200
|||||||| |||||||||||| | ||| || ||||||| | || |||||| ||||||||
Sbjct 61 GAGAGAGGAGCCAAGTTGTTA-ACAGATCTGATCGAAT-TCGGCCATGGCATATCCAATC 118
Query 201 CCATCAAATTCTTCTCTGCTGATGAGATCCTCAAAGCCACCAACGATTTCAGCGACTCTA 260
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 119 CCATCAAATTCTTCTCTGCTGATGAGATCCTCAAAGCCACCAACAATTTCAGCGACTCTA 178
Query 261 ATTTTGTTT 269
|| |||||
Sbjct 179 ATCGTGTTT 187
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55040404025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5