BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65270.2
Length=1250
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475538 jgi|Araly1|475538|fgenesh2_kg.2__668__AT1G65270.2 1831 0.0
> Ahg475538 jgi|Araly1|475538|fgenesh2_kg.2__668__AT1G65270.2
Length=1108
Score = 1831 bits (991), Expect = 0.0
Identities = 1071/1110 (96%), Gaps = 4/1110 (0%)
Strand=Plus/Plus
Query 109 aaaaaaaCTCAATCGCCAGCAACAATGGCGAAGCTCACACTTCTCTTCTTCCTTTCCTTT 168
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAACCTCAATCGCCGGCAACAATGGCGAAGCTCACACTTCTCTTCTTCCTTTCCTTT 60
Query 169 CTCATCTTCTCCTCATCCATCGCTTTCCAATCAGACGAGCTCCTCGTTGACGACGACGAA 228
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 61 CTCATCTTCTCCTCATCCATCGCTTTCCAATCAGACGAACTCCTCGTTGACGACGATGAA 120
Query 229 TTTGGTCTAGAAGGAGCAAAGCCCCGCTCCACCGATCTTTACACATCTTCTTCTTCTTCG 288
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 121 TTTGGTCTAGAAGGAGCAAAGCCCCGCTCCACCGATCTTCACACATCATCTTCTTCTTCG 180
Query 289 CCACAGCAGCAGCAACAGACTCCAACTATCCGGAGAAGATACTCAGATCCTACCGATTTG 348
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCGCAGCAGCAGCAACAGACTCCAACTATCCGGAGAAGATACTCAGATCCTACCGATTTG 240
Query 349 GATTCAAAAGTCCAATTTACTCTCGAACATGCCTTCGGTGACTCTGATTTCTCCCCCGCC 408
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GATTCCAAAGTCCAATTTACTCTCGAACATGCCTTCGGTGACTCTGATTTCTCCCCCGCC 300
Query 409 GGTACTTTCTCCGCTCGTCTCAAAACCTGGAGTCATGGCGGAAAGACATTAACGAAGCTG 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGTACTTTCTCCGCTCGTCTCAAAACCTGGAGTCATGGCGGAAAGACATTAACGAAGCTG 360
Query 469 CGATTCTCTAGAAATGATTTTTCTGCTGAAGAGAAAGATGCATTCAAGAATCTGCTGAAA 528
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CGATTCTCTAGGAATGATTTTTCTGCTGAAGAGAAAGATGCATTCAAGAATCTGCTGAAA 420
Query 529 GGAGATGACTTTTATCGGATTCGGCTTCCATCTAATGTGGTTAGTCCACCAGGGAGAGAG 588
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 421 GGAGATGACTTTTATCGGATTCGACTTCCATCTAATGTGGTCAGTCCACCAGGGAGAGAG 480
Query 589 TTTGTGATTGCATCAGTGAGAGCTAGATGTCTACCACGGGATGGCTTGGATGAGCATTTC 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTTGTGATTGCATCAGTGAGAGCTAGATGTCTACCACGGGATGGCTTGGATGAGCATTTC 540
Query 649 ATTATACACATGGAAGGTGCTAACATCTTGGCAGTTAGTTATGGTTCTCCTGGGGCGTGT 708
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATTATACACATGGAAGGTGCCAACATCTTGGCAGTTAGTTATGGTTCTCCTGGGGCGTGT 600
Query 709 CAATATCCTCGCCAATTGAAACTTCCAGCAAAATGGTCGTTTAACTCTCACACAATTCTG 768
||||||||||| || |||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 601 CAATATCCTCGACAGTTGAAACTTCCAGCAAAATGGTCGTTTAACTCGCACACCATCCTG 660
Query 769 AAAAGCAGTGAGCAGGCGCCAAGAACTCCAATATTCACTGAGGAGATTCTAGGCAGTGAG 828
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 661 AAAAGCAGTGAGCAGGCGCCAAGAACTCCAATATTCACTGAGGAGATTCTAGGCGGTGAG 720
Query 829 AATGTAGAGGGAGAAGTTGAACCACCACCAGAGAGATCATTTTGGGCGAAATATTGGATG 888
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 721 AATGTAGAGGGAGAAGTTGAACCGCCACCAGAGAGATCATTTTGGGCAAAATATTGGATG 780
Query 889 TATTTGATACCGCTGGGACTCGTAGTGATGAATGCCGTGACACAAGCATCAAACATGGCT 948
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 781 TATTTGATACCGCTGGGACTCGTAGTGATGAACGCCGTAACACAAGCATCAAACATGGCT 840
Query 949 GAAGAACCTGCGGGTGGACAGGCAGGAGGTGCACAAGTGCAACCAGCTGCCAGGAGAAGA 1008
|||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 841 GAAGAACCCGCAGGTGGACAGGCAGGAGGTGCACAAATGCAACCAGCTGCCAGGAGAAGA 900
Query 1009 TGATTCCACTTTTACTTCTCCCAAAGCAATGAAAGGTAGACCAC-GCCGCAATTACTATG 1067
|||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||| |||
Sbjct 901 TGATTCCACTTTTACTTCTCCCAAAGCAATCAAAGGTAGACCACAGCC-CAATTACGATG 959
Query 1068 CACAAATTTCTCTTTTACCTAGCAGTCTTTAAATCTTATGATC-CTAGGAGAATACATTT 1126
|||||||||| |||||| |||||||||||||||||||||||| | ||||| ||||||||
Sbjct 960 AACAAATTTCTTTTTTACATAGCAGTCTTTAAATCTTATGATCGC-AGGAGGATACATTT 1018
Query 1127 ATATATTTGTTTGGCTATCTTCGCAGCTGTGGATTTATATTATTTGGTTGTAACTTATAA 1186
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 ATATATTTGTTGGGCTATCTTCGCAGCTGTGGATTTATATTATTTGGTTGTAACTTATAA 1078
Query 1187 GTCACGTGGAATTAAATGAATTCGGAGTTT 1216
|||||| |||||||| |||||||||| |||
Sbjct 1079 GTCACGCGGAATTAACTGAATTCGGAATTT 1108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46700573325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5