BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65280.1
Length=2132
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475539 jgi|Araly1|475539|fgenesh2_kg.2__669__AT1G65280.1 2872 0.0
> Ahg475539 jgi|Araly1|475539|fgenesh2_kg.2__669__AT1G65280.1
Length=1934
Score = 2872 bits (1555), Expect = 0.0
Identities = 1728/1810 (95%), Gaps = 18/1810 (1%)
Strand=Plus/Plus
Query 113 GGATTGAACAATATGGGTAAGCACTGGAAGAGAGA-TTCTGATTCGGGAGACGATACTCC 171
||||||||||| |||||||||||| |||||||||| | |||||||||||||||||||||
Sbjct 1 GGATTGAACAAAATGGGTAAGCACAGGAAGAGAGAGGT-TGATTCGGGAGACGATACTCC 59
Query 172 ATCGTCAGCAACATCGTC--C-TC---CTCGTCATACAGCTCAGACGAATCTGATTCATC 225
||| |||||||||||||| | || |||||||||||||| ||||| |||||||| ||
Sbjct 60 ATCTTCAGCAACATCGTCGTCGTCTGTTTCGTCATACAGCTCCGACGAGTCTGATTCGTC 119
Query 226 TTCTAGAAAGTGGCGGAAGAAGCAAAAGGAGCGGCGGAAAAGTGACGGAGGAAGTTATga 285
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTCTAGAAAGCGGCGGAAGAAGCAAAAGGAGCGGCGGAAAAGTGACGGAGGAAGTTATGA 179
Query 286 gagagagaaacggaggaagagagagaaggagaggaagaggaagaagattgagaggaagga 345
||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct 180 GAGAGAGAAGCGGAGGAAGAGGGAGAAGGAAAGGAAGAGGAAGAAGATTGAGAGGAAAGA 239
Query 346 gagaaagaggagggatatgaagaagaagaagaagactaagaagCGTGAATATGAGTCTGA 405
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 240 GAGAAAGAGGAGAGATATGAAGAAGAAGAAGAAGACTAAGAAGCGTGATTATGAGTCTGA 299
Query 406 TACTGAGTCTTACTCTGGTTCTGATTCATTCTCTGATCAAGAGGATGATCCTGAAACTGT 465
|||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 TACTGAGTCTCACTCTGCTTCTGATTCATTCTCTGATCAAGAGGATGAGCCTGAAACTGT 359
Query 466 GGTTAAA-GAGATGCTT-TTGGAGTTTCCTAATGTTGGCAATGATTTGAAACAGCTTTTG 523
|| |||| |||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GG-TAAAGGAGATG-TTGTTGGAGTTTCCTAATGTTGGCAATGATTTGAAACAGCTTTTG 417
Query 524 AAAATGATTGATGACGGACAAGCGGTTGATATAAAGGGTATTTCCGAGAGCACTTTGAAG 583
|||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 418 AAAATGATAGATGATGGGCAAGCGGTTGATATAAAGGGTATTTCCGAGAGTGCTTTGAAG 477
Query 584 AAGAGGTTGAAGAAGTTGTTTCTTTCTTTGAAGTTAAAGGAACGTGGGGATAGAGTCTTT 643
||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 478 AAGCGGTTGAAGAAGCTGTTTCTTTCTTTGAAGTTGAAGGAACGTGGGGATAGAGTGTTT 537
Query 644 TTATTACCACCAGGTGCTTCTCCTTCTTTAGATGTAGTGGGGCATCTTATTAAAGGCGGC 703
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 538 TTGTTACCACCAGGTGCTTCTCCTTCTTTAGATGTAGTGGGGCATCTTATTAAAGGCAGT 597
Query 704 GAAGAAGATGTTGAGAAAAGCCTTGACGATTCT-TCCCCATTGAAGGAA-ACTGAAAAGG 761
|||||||| |||||||||| |||||| |||||| | ||||||||| ||| ||||||||||
Sbjct 598 GAAGAAGAAGTTGAGAAAAACCTTGAGGATTCTGT-CCCATTGAA-GAACACTGAAAAGG 655
Query 762 GTTTGGCAGATGAGAACGGTTTGGGATCGAATTCAGCTGATGATGTTACTGGTCCAAAGA 821
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 656 GTTTGCCAGATGAGAACGGTTTGGGATCGAATTCAGCTGATGATGTTGCTGGTCCAAAGA 715
Query 822 AAAGGGTGATTGGACCTGCAATGCCATCAGCTGAGTTACTTGCTGCAGCAGCTAAGCTAA 881
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 716 AAAGGGTGATTGGACCTGCAATGCCATCGGCTGAGTTACTTGCTGCAGCAGCAAAGCTAA 775
Query 882 CAGAAGCTCAAGCTGAACTTAGAGAAGCTGAGCTAGAAGAAGATTCAGAATATTTCATTG 941
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 776 CAGAAGCTCAAGCTGAACTTAGAGAAGCTGAGCTAGAAGAAGATTCACAATATTTCATTG 835
Query 942 GACCTGCTCCACCAGCTGTTGTTGCAGAAGTTGCATCGTCGAACGAGGCAGAGCGATTTG 1001
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 836 GACCTGCTCCACCAGCTGTTGTTGCAGAAGTTGCATCGTCGAATGAGGCAGAGCGATTTG 895
Query 1002 AAGAGGTGACACGGATTATGGAAGCTGACGCTAATAGTCCATACGACGTCTTAGGAGTGA 1061
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 896 AAGAGGTGACACGGATTATGGAAGCTGACGCTGATAGTCCATACGACGTCTTAGGAGTGA 955
Query 1062 ATCACAATATGGCTGCTGATAATATGAAGAAAAGGTACTGGAAGCTGTCGCTTCTTGTTC 1121
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 956 ATCACAATATGGCTGCTGATAATATGAAGAAGAGGTACTGGAAGCTGTCTCTTCTTGTTC 1015
Query 1122 ACCCAGACAAATGTTCTCATCCCCAAGCCCAGGAAGCTTTTGTTTTACTGAATAAAGCTT 1181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 ACCCAGACAAATGTTCTCATCCCCAAGCCCAGGAAGCTTTTGTTTTACTGAATAAAGCTT 1075
Query 1182 TCAAAGAATTACAAGATCCAGAAAAGAGAAAAGCAATGGATGACAAGATTAAACTTAAGG 1241
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1076 TCAAAGAATTACAAGATCCAGAAAAGAGAAAAGCAATGGATGATAAGATTAAACTCAAGG 1135
Query 1242 AGGAACAAGAGGCATTTAAGGTTGAATTACGTTCAATGCAAGAAGCAGCACAGTGGAGAA 1301
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1136 AGGAACAAGAGGCATTTAAGGTTGAATTACGTTCAATGCAAGAAGCGGCACAATGGAGAA 1195
Query 1302 GATCACAAGGCATATCAATGGAAGGGGATGCAGAGTTGTTGGCAGCAACCGAGGTTAAAC 1361
||||||||||||||||||||||||| || |||||| || ||||||||||||| |||||||
Sbjct 1196 GATCACAAGGCATATCAATGGAAGGTGACGCAGAGCTGCTGGCAGCAACCGAAGTTAAAC 1255
Query 1362 CTGAACCTAAAAGAGATGAGTGGATGACCACTCTGCCTCCTGAAAGAAAGGTTGGAGTGG 1421
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 CTGTACCTAAAAGAGACGAGTGGATGACCACTCTGCCTCCTGAAAGAAAGGTTGGAGTGG 1315
Query 1422 CCGTGCAGCAATCAACCACGTTTAGTAGAAATGCTAGAGAAGGACGCGGAGACACTACAG 1481
| ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1316 CTGTGCAGCAATCAACCACATTTAGCAGAAATGCTAGAGAAGGTCGCGGAGACACTACAG 1375
Query 1482 CGTGGACTGATACTCCTATGGACAAAGCTGAAAGAGCAAAGATGAATTACTTGGAGGCAT 1541
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 CCTGGACCGATACTCCTATGGACAAAGCTGAAAGAGCAAAGATGAATTACTTGGAGGCAT 1435
Query 1542 ACAACAAGGCGAGTGCGCTTGCATCAAACGAAGGGGAAAATATGAAAAGAAGCATGGATG 1601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 ACAACAAGGCGAGTGCGCTTGCATCAAACGAAGGGGAAAATATGAAAAGAAGCATGGATG 1495
Query 1602 CTGAGCTTGTAGACAAGTATAACAAAGAGAAAAGAGCAAAGTCTCTGGTAGAGAAGCACA 1661
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 CTGAGCTTGTGGACAAGTATAACAAAGAGAAAAGAGCAAAGTCTCTGGTAGAGAAGCACA 1555
Query 1662 GAGAAGACTCTTCTTCTTCTTCAAGCCGTCTGAAAAAGAAGAAGAAATTGTCTTCATCCA 1721
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1556 GAGAAGACTCTTCTTCTTCTTCAAGCCGTCTGAAGAAGAAGAAGAAATTGTCTTCATCCA 1615
Query 1722 AAGAGAAAACCGAGAAGGACGAGTGGGTAGGGAAACATCCGTGGAAGCCATGGGACCGTG 1781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 AAGAGAAAACCGAGAAGGACGAGTGGGTAGGGAAACATCCGTGGAAGCCATGGGACCGTG 1675
Query 1782 AAAACGACCTTACTGCCGGGAGACAGAATGTGAAACTTGATGCCGATGGTATGGCTGAAG 1841
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1676 AAAACGATCTTACTGCCGGGAGACAGAATGTGAAACTTGATGCCGAGGGTATGGCTGAAG 1735
Query 1842 GTTTGGCTTCCAAGTTTTCTTCTGGGAATTTCCAAAGAAGCTTCCTTTAGA-GCTTGTTG 1900
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1736 GTTTGGCTTCCAAGTTTTCTTCTGGGAATTTCCAAAGAAGCTTCCTTT-GAAGCTTGTTG 1794
Query 1901 AAGGAAACTT 1910
|||||||||
Sbjct 1795 CAGGAAACTT 1804
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80218055970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5