BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G65290.1 Length=696 Score E Sequences producing significant alignments: (Bits) Value Ahg925432 jgi|Araly1|925432|scaffold_200993.1 673 0.0 Ahg947275 jgi|Araly1|947275|scaffold_703504.1 333 1e-90 > Ahg925432 jgi|Araly1|925432|scaffold_200993.1 Length=421 Score = 673 bits (364), Expect = 0.0 Identities = 403/422 (95%), Gaps = 1/422 (0%) Strand=Plus/Plus Query 36 TTACTCTGCAATACACAGCAATGGCGGCGAGAGGTGCTATGCTTCGATACCTGAGAGTCA 95 |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 1 TTACTCTGCAATACACAGCAATGGCGGCGAGAGGTGCTTTGCTTCGATACCTTAGAGTCA 60 Query 96 ACGTCAATCCAACAATTCAAAACCCTAGAGAATGTGTACTTCCTTTCTCCATTCTCCTTC 155 |||||||||||||||||||||||||||||| ||||| ||||||||||||| |||| |||| Sbjct 61 ACGTCAATCCAACAATTCAAAACCCTAGAGCATGTGCACTTCCTTTCTCCGTTCTTCTTC 120 Query 156 GTCGTTTCTCCGAGGAAGTTAGAGGCTCTTTCCTTGACAAATCTGAGGTCACAGATCGAG 215 | |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 121 GCCGTTTCTCTGAGGAAGTTAGAGGCTCTTTCCTTGACAAATCTGAGGTCACTGATCGCG 180 Query 216 TTCTCTCTGTCGTCAAAAACTTCCAAAAAGTTGATCCTTCTAAGGTAACACCAAAAGCCA 275 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TTCTCTCTGTCGTCAAAAACTTCCAAAAAGTTGATCCTTCTAAGGTAACACCAAAAGCCC 240 Query 276 ATTTCCAAAATGATCTAGGGTTGGACAGTTTGGACAGTGTGGAAGTTGTGATGGCATTGG 335 |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 ATTTCCAAAACGATCTCGGGTTGGACAGTTTGGACAGTGTGGAAGTTGTGATGGCATTGG 300 Query 336 AGGAGGAATTTGGGTTTGAGATCCCTGATAATGAAGCAGACAAGATCCAGTCCATCGATC 395 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 301 AGGAGGAATTTGGGTTTGAGATCCCTGATAATGAAGCAGACAAGATCCAGTCGATCAATC 360 Query 396 TAGCCGTTGACTTTATTGCTTCTCATCCTCAGGCTAAGTGAAAAGAGAAACAAATTCTTC 455 |||| ||||| |||||||||||||||||||||||||||| |||||||||| ||||||||| Sbjct 361 TAGCTGTTGATTTTATTGCTTCTCATCCTCAGGCTAAGT-AAAAGAGAAATAAATTCTTC 419 Query 456 GG 457 || Sbjct 420 GG 421 > Ahg947275 jgi|Araly1|947275|scaffold_703504.1 Length=425 Score = 333 bits (180), Expect = 1e-90 Identities = 325/394 (82%), Gaps = 13/394 (3%) Strand=Plus/Plus Query 51 CAGCAATGGCGGCGAGAGGTGCTATGCTTCGATACCTGAGAGTCAACGTCA-ATCCAACA 109 ||||||||||||||||||||||| ||||| |||||| |||||||| |||| | || | Sbjct 16 CAGCAATGGCGGCGAGAGGTGCTCTGCTTAAATACCTTAGAGTCAATGTCACA-CCTTCT 74 Query 110 ATTCAAAACCCTAG-AGAAT--GTGT-ACTTCCTTTCTCCATTCTCCTTCGTCGTTTCTC 165 |||||| | | || || || | | | |||||| | | |||| | ||||||||||| Sbjct 75 CTTCAAATCTCAAGCAGTATCACT-TCCCCTCCTTTATACGTTCTTATCCGTCGTTTCTC 133 Query 166 CGAGGAAGTTAGAGGCTCTTTCCTTGACAAATCTGAGGTCACAGATCGAGTTCTCTCTGT 225 || ||||| ||||| || ||||| |||||||| || ||||||||||| ||||||||||| Sbjct 134 TGAAGAAGTGAGAGGATCATTCCTCGACAAATCCGAAGTCACAGATCGCGTTCTCTCTGT 193 Query 226 CGTCAAAAACTTCCAAAAAGTTGATCCTTCTAAGGTAACACCAAAAGC-CAATTTCCAA- 283 |||||||||||||||||||||||||||||||||||| |||||||| || || |||| || Sbjct 194 CGTCAAAAACTTCCAAAAAGTTGATCCTTCTAAGGTGACACCAAAGGCGCA-TTTC-AAC 251 Query 284 AATGATCTAGGGTTGGACAGTTTGGACAGTGTGGAAGTTGTGATGGCATTGGAGGAGGAA 343 ||||||||||| ||||| |||||||||| |||||| || || ||||||||||| ||||| Sbjct 252 AATGATCTAGGTTTGGATAGTTTGGACACTGTGGAGGTGGTTATGGCATTGGAAGAGGAG 311 Query 344 TTTGGGTTTGAGATCCCTGATAATGAAGCAGACAAGATCCAGTCCATCGATCTAGCCGTT 403 ||||| ||||| || |||||||| ||||| || ||||| ||||| |||||||| || ||| Sbjct 312 TTTGGATTTGAAATACCTGATAACGAAGCTGATAAGATACAGTCGATCGATCTCGCTGTT 371 Query 404 GACTTT-ATTGCTTCTCATCCTCAGGCTAAGTGA 436 || ||| ||||| || || || ||||| |||||| Sbjct 372 GA-TTTCATTGCGTCACACCCGCAGGCAAAGTGA 404 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25580477307 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5