BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65290.1
Length=696
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925432 jgi|Araly1|925432|scaffold_200993.1 673 0.0
Ahg947275 jgi|Araly1|947275|scaffold_703504.1 333 1e-90
> Ahg925432 jgi|Araly1|925432|scaffold_200993.1
Length=421
Score = 673 bits (364), Expect = 0.0
Identities = 403/422 (95%), Gaps = 1/422 (0%)
Strand=Plus/Plus
Query 36 TTACTCTGCAATACACAGCAATGGCGGCGAGAGGTGCTATGCTTCGATACCTGAGAGTCA 95
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1 TTACTCTGCAATACACAGCAATGGCGGCGAGAGGTGCTTTGCTTCGATACCTTAGAGTCA 60
Query 96 ACGTCAATCCAACAATTCAAAACCCTAGAGAATGTGTACTTCCTTTCTCCATTCTCCTTC 155
|||||||||||||||||||||||||||||| ||||| ||||||||||||| |||| ||||
Sbjct 61 ACGTCAATCCAACAATTCAAAACCCTAGAGCATGTGCACTTCCTTTCTCCGTTCTTCTTC 120
Query 156 GTCGTTTCTCCGAGGAAGTTAGAGGCTCTTTCCTTGACAAATCTGAGGTCACAGATCGAG 215
| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 121 GCCGTTTCTCTGAGGAAGTTAGAGGCTCTTTCCTTGACAAATCTGAGGTCACTGATCGCG 180
Query 216 TTCTCTCTGTCGTCAAAAACTTCCAAAAAGTTGATCCTTCTAAGGTAACACCAAAAGCCA 275
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTCTCTCTGTCGTCAAAAACTTCCAAAAAGTTGATCCTTCTAAGGTAACACCAAAAGCCC 240
Query 276 ATTTCCAAAATGATCTAGGGTTGGACAGTTTGGACAGTGTGGAAGTTGTGATGGCATTGG 335
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATTTCCAAAACGATCTCGGGTTGGACAGTTTGGACAGTGTGGAAGTTGTGATGGCATTGG 300
Query 336 AGGAGGAATTTGGGTTTGAGATCCCTGATAATGAAGCAGACAAGATCCAGTCCATCGATC 395
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 301 AGGAGGAATTTGGGTTTGAGATCCCTGATAATGAAGCAGACAAGATCCAGTCGATCAATC 360
Query 396 TAGCCGTTGACTTTATTGCTTCTCATCCTCAGGCTAAGTGAAAAGAGAAACAAATTCTTC 455
|||| ||||| |||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 361 TAGCTGTTGATTTTATTGCTTCTCATCCTCAGGCTAAGT-AAAAGAGAAATAAATTCTTC 419
Query 456 GG 457
||
Sbjct 420 GG 421
> Ahg947275 jgi|Araly1|947275|scaffold_703504.1
Length=425
Score = 333 bits (180), Expect = 1e-90
Identities = 325/394 (82%), Gaps = 13/394 (3%)
Strand=Plus/Plus
Query 51 CAGCAATGGCGGCGAGAGGTGCTATGCTTCGATACCTGAGAGTCAACGTCA-ATCCAACA 109
||||||||||||||||||||||| ||||| |||||| |||||||| |||| | || |
Sbjct 16 CAGCAATGGCGGCGAGAGGTGCTCTGCTTAAATACCTTAGAGTCAATGTCACA-CCTTCT 74
Query 110 ATTCAAAACCCTAG-AGAAT--GTGT-ACTTCCTTTCTCCATTCTCCTTCGTCGTTTCTC 165
|||||| | | || || || | | | |||||| | | |||| | |||||||||||
Sbjct 75 CTTCAAATCTCAAGCAGTATCACT-TCCCCTCCTTTATACGTTCTTATCCGTCGTTTCTC 133
Query 166 CGAGGAAGTTAGAGGCTCTTTCCTTGACAAATCTGAGGTCACAGATCGAGTTCTCTCTGT 225
|| ||||| ||||| || ||||| |||||||| || ||||||||||| |||||||||||
Sbjct 134 TGAAGAAGTGAGAGGATCATTCCTCGACAAATCCGAAGTCACAGATCGCGTTCTCTCTGT 193
Query 226 CGTCAAAAACTTCCAAAAAGTTGATCCTTCTAAGGTAACACCAAAAGC-CAATTTCCAA- 283
|||||||||||||||||||||||||||||||||||| |||||||| || || |||| ||
Sbjct 194 CGTCAAAAACTTCCAAAAAGTTGATCCTTCTAAGGTGACACCAAAGGCGCA-TTTC-AAC 251
Query 284 AATGATCTAGGGTTGGACAGTTTGGACAGTGTGGAAGTTGTGATGGCATTGGAGGAGGAA 343
||||||||||| ||||| |||||||||| |||||| || || ||||||||||| |||||
Sbjct 252 AATGATCTAGGTTTGGATAGTTTGGACACTGTGGAGGTGGTTATGGCATTGGAAGAGGAG 311
Query 344 TTTGGGTTTGAGATCCCTGATAATGAAGCAGACAAGATCCAGTCCATCGATCTAGCCGTT 403
||||| ||||| || |||||||| ||||| || ||||| ||||| |||||||| || |||
Sbjct 312 TTTGGATTTGAAATACCTGATAACGAAGCTGATAAGATACAGTCGATCGATCTCGCTGTT 371
Query 404 GACTTT-ATTGCTTCTCATCCTCAGGCTAAGTGA 436
|| ||| ||||| || || || ||||| ||||||
Sbjct 372 GA-TTTCATTGCGTCACACCCGCAGGCAAAGTGA 404
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25580477307
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5