BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G65295.1

Length=573
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg475541 jgi|Araly1|475541|fgenesh2_kg.2__671__AT1G65295.1          808    0.0  


> Ahg475541 jgi|Araly1|475541|fgenesh2_kg.2__671__AT1G65295.1
Length=566

 Score =  808 bits (437),  Expect = 0.0
 Identities = 537/581 (92%), Gaps = 23/581 (4%)
 Strand=Plus/Plus

Query  1    ACATAATaaaccaaacccaacaaagaaaataaaatttc-aaaccaaaaaaaaaaaaaaTG  59
            ||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||
Sbjct  1    ACATAATAAACCAAACCCAACAAAGAAAAGAAAATTTCAAAACC-AAAAAAAAAAAAATG  59

Query  60   AGAACTTTAGAAGAATCGAAGATCTCTATTGTCTTCTTGTTGCTTCTTCTCTTCTCAATC  119
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  60   AGAACTTTAGAAGAATCGAAGATCTCTATTGTCTTCTTGTTACTTCTTCTCTTCTCAATC  119

Query  120  TTCATCAGTTCCAGTCACCAGGCAAATGAGGTATTACCAGCTGAAGGAGATAATGAGATG  179
            |||||||||| |||||||||||||||||||||||||||| ||| |  ||  || |||| |
Sbjct  120  TTCATCAGTTTCAGTCACCAGGCAAATGAGGTATTACCATCTG-A--AG--AA-GAGAAG  173

Query  180  ATGATGGTGCCATTGGGGGAGGAGAAGTTTATGGTAATGAATGAAACAAGAAGGAAACTT  239
            |||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||
Sbjct  174  ATGATGGTGCCATTGATGGAGGAGAAGTTTATGGTAATGAATGAAACAAGAAGGAAGCTT  233

Query  240  GGAAGTTTTCAGATATGTTCAGTTTGTACTTGTTGTGGTGGTGCTAAAGGTCTTTGCTTG  299
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct  234  GGAAGTTTTCAGATATGTTCTGTTTGTACTTGTTGTGGTGGTGCTAAAGGTCTTTGCTTA  293

Query  300  CCTTCTCCTTGTTGCTATGCTATTAACTGCAATATCCCTAATAGACCCTTTGGTTACTGT  359
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  294  CCTTCTCCTTGTTGCTATGCTATTAACTGCAACATCCCTAATAGACCCTTTGGTTACTGT  353

Query  360  TCTTTCACTCCCAAAACTTGCAATTGCTTTGGTTGCCATATCTGAGATCTTCTACTTCAT  419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  354  TCTTTCACTCCCAAAACTTGCAATTGCTTTGGTTGCCATATCTGAGATCTTCTACTTCAT  413

Query  420  TGTAAT-TTGGGAGAGAAACAAGTG-AATCTAAATCTTG----ATTCATCTTCAAGTGTG  473
            |||||| || | |      || | | |||||||||||||    |||||||| ||||||||
Sbjct  414  TGTAATGTTTG-ATT----CAGG-GCAATCTAAATCTTGCTTGATTCATCTACAAGTGTG  467

Query  474  AAAGGGAGGaaaaaaaGAAGAATATCTGTTCTTGGTTTGAGT-CTTCTACTTATTTTTTG  532
            ||||||||||||||| |||| |||||||||||||||||| || ||| |  ||| ||||||
Sbjct  468  AAAGGGAGGAAAAAA-GAAGCATATCTGTTCTTGGTTTG-GTTCTTATTTTTAATTTTTG  525

Query  533  TCTATAATTTATTTTTCAGTCTTCATTAAATTTCATTACCT  573
            |||||||||||||||||||||||||||||||||||||||||
Sbjct  526  TCTATAATTTATTTTTCAGTCTTCATTAAATTTCATTACCT  566



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20947418361


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5