BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65310.1
Length=1049
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475629 jgi|Araly1|475629|fgenesh2_kg.2__759__AT4G30280.1 1543 0.0
Ahg491722 jgi|Araly1|491722|fgenesh2_kg.7__1155__AT4G30280.1 1319 0.0
Ahg491721 jgi|Araly1|491721|fgenesh2_kg.7__1154__AT4G30290.1 1101 0.0
Ahg494858 jgi|Araly1|494858|fgenesh2_kg.8__674__AT5G48070.1 915 0.0
Ahg475586 jgi|Araly1|475586|fgenesh2_kg.2__716__AT4G30280.1 911 0.0
Ahg495852 jgi|Araly1|495852|fgenesh2_kg.8__1668__AT5G57530.1 73.1 4e-12
> Ahg475629 jgi|Araly1|475629|fgenesh2_kg.2__759__AT4G30280.1
Length=1023
Score = 1543 bits (835), Expect = 0.0
Identities = 953/1008 (95%), Gaps = 15/1008 (1%)
Strand=Plus/Plus
Query 44 AAAATGAAGCTTTCTTGTGGTACAAGCTTTGCGTTCTTACTTCTGTTTCTTCTTGCGGCA 103
|||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||| |
Sbjct 27 AAAATGAAGCTTTCTTGTGGTACAAGTTTTTCGTTCTTAATTCTGTTTCTTCTTGCGGGA 86
Query 104 CAATCTGTGCATGTCTATGCGGGTAGCTTCCACAAAGACGTTCAGATACATTGGGGTGAT 163
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 87 CAATATGTGCATGTCTATGCGGGTAGCTTCCACAAAGACGTTCAGATACATTGGGGTGAT 146
Query 164 GGCCGCGGAAAGATTCACGACAGAGATGGAAAACTTCTTTCTCTCTCGCTCGACAAATCC 223
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 147 GGCCGCGGAAAGATTCACGACAAAGATGGAAAACTTCTTTCTCTCTCGCTCGACAAATCC 206
Query 224 TCTGGATCCGGTTTTCAGTCTAACCAGGAGTTTCTCTATGGCAAAGCCGAGGTTCAAATG 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 207 TCTGGATCCGGTTTTCAGTCTAACCAGGAGTTTCTCTATGGCAAAGCCGAGGTTCAAATG 266
Query 284 AAACTTGTTCCTGGTAATTCAGCTGGAACAGTGACAACATTCTATCTAAAATCTCCGGGA 343
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 267 AAACTTGTTCCTGGTAATTCAGCTGGAACAGTAACAACATTCTATCTAAAATCGCCGGGA 326
Query 344 ACTACGTGGGATGAGATCGATTTCGAGTTCTTGGGAAACATAAGTGGTCATCCATATACT 403
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 327 ACTACGTGGGATGAGATCGATTTCGAGTTCTTGGGAAACATAAGTGGTCATCCGTATACT 386
Query 404 CTCCATACTAATGTTTACACAAAAGGCACAGGAGACAAAGAACAACAATTTCATCTATGG 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 CTCCATACTAATGTTTACACAAAAGGCACAGGAGACAAAGAACAACAATTTCATCTATGG 446
Query 464 TTCGACCCAACCGTTAACTTTCACACTTATTGCATCACATGGAATCCTCAAAGGATTATT 523
|||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 447 TTCGACCCCACCGTTAATTTTCACACTTATTGCATCACATGGAATCCCCAAAGGATTATT 506
Query 524 TTTACGGTTGATGGAATTCCTATTAGAGAGTTCAAGAACCCCGAGGCGATTGGAGTCCCG 583
||||||||||||||||||||||||||||||||||| ||| | ||||| |||||||| |||
Sbjct 507 TTTACGGTTGATGGAATTCCTATTAGAGAGTTCAAAAACTCTGAGGCAATTGGAGTTCCG 566
Query 584 TTCCCAACTAGACAACCAATGAGACTCTACGCGAGTCTTTGGGAAGCCGAGCATTGGGCA 643
|||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 567 TTCCCAACGAGACAACCAATGAGGCTCTACGCGAGTCTCTGGGAAGCCGAGCATTGGGCA 626
Query 644 ACAAGAGGAGGATTAGAGAAAACAGATTGGTCAAAAGCTCCTTTTACTGCTTTTTATAGA 703
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 627 ACAAGAGGAGGATTAGAGAAAACAGATTGGTCAAAAGCTCCTTTTACTGCTTTCTACAGA 686
Query 704 AACTACAATGTCGATGGATGTGTATGGGCTAATGGAAAATCATCTTGTTCCGCGAATTCC 763
|||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||
Sbjct 687 AACTACAATGTCGATGGATGTGTATGGGCTAACGGAAAATCATCATGTTCCGAGAATTCC 746
Query 764 CCATGGTTCACTCAAAAACTCGATTCGAACGGCCAGACAAGAATGAAAGGTGTGCAAAGT 823
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 747 CCATGGTTCACTCAAAAACTCGATTCAAACGGCCAGACAAGAATGAAAGGTGTACAAAGT 806
Query 824 AAATACATGATCTACAACTATTGCACCGATAAAAGAAGGTTTCCTCGAGGA-GTTCCTGC 882
||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct 807 AAATACATGATCTACAACTATTGCACCGATAAAAGAAGGTTTCCTCGCG-ATGTTCCTGC 865
Query 883 CGAGTGCACTTAAATTCTTGATTCTTTGATACATGAATATGTTACTTGGCATTGCCTTTG 942
| ||||||||||||| ||||||||||||| ||||| ||||||||| ||||||||||
Sbjct 866 AGTGTGCACTTAAATTGTTGATTCTTTGAT----GAATAAGTTACTTGGTATTGCCTTTG 921
Query 943 TAACTCAATCAAGtttttatttatttttatcatttatttGTTGCTCATATATACAGTATG 1002
||||||||| |||||||||| |||||||||||||||||||||||||||||||| | |
Sbjct 922 TAACTCAATTAAGTTTTTATCTATTTTTATCATTTATTTGTTGCTCATATATA---T--G 976
Query 1003 TGGTGTTTGTGTAA-GATGTTTTAAGATTGAAGTAATAAAAATAAATT 1049
|||| ||| ||||| ||||||| | | ||||||||||| |||||||
Sbjct 977 TGGTTTTTATGTAAAGATGTTTGCA-A--GAAGTAATAAATATAAATT 1021
> Ahg491722 jgi|Araly1|491722|fgenesh2_kg.7__1155__AT4G30280.1
Length=1008
Score = 1319 bits (714), Expect = 0.0
Identities = 865/937 (92%), Gaps = 13/937 (1%)
Strand=Plus/Plus
Query 8 ACAATACATTTGAGATATCAATACTCCT-GTGAGA---A-CAAAATGAAGCTTTCTTGTG 62
|||||||||||||||||||||||||||| | | | ||||||||||||||||||||
Sbjct 5 ACAATACATTTGAGATATCAATACTCCTCCACAAATCTACCAAAATGAAGCTTTCTTGTG 64
Query 63 GTACAAGCTTTGCGTTCTT-ACTTCTGTTTCTTCTTGCGGCACAATCTGTGCATGTCTAT 121
||||||| ||||||||||| | || |||||||| ||||||||||||||||||||||| ||
Sbjct 65 GTACAAGTTTTGCGTTCTTGA-TTTTGTTTCTTTTTGCGGCACAATCTGTGCATGTCAAT 123
Query 122 GCGGGTAGCTTCCACAAAGACGTTCAGATACATTGGGGTGATGGCCGCGGAAAGATTCAC 181
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 124 GCGGGTAGCTTCCACAAAGACGTTCAGATACATTGGGGTGATGGCCGCGGAAAGATTCGC 183
Query 182 GACAGAGATGGAAAACTTCTTTCTCTCTCGCTCGACAAATCCTCTGGATCCGGTTTTCAG 241
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 GACAGAGATGGAAAGCTTCTTTCTCTCTCGCTCGACAAATCCTCTGGATCCGGTTTTCAG 243
Query 242 TCTAACCAGGAGTTTCTCTATGGCAAAGCCGAGGTTCAAATGAAACTTGT-TCCTGGTAA 300
||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 244 TCTAACCAGGAGTTTCTCTATGGCAAAGCTGAGGTTCAAATGAAACTTGTCTC-TGGTAA 302
Query 301 TTCAGCTGGAACAGTGACAACATTCTATCTAAAATCTCCGGGAACTACGTGGGATGAGAT 360
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 303 CTCAGCTGGAACAGTGACAACATTTTATCTTAAATCTCCGGGAACTACGTGGGATGAGAT 362
Query 361 CGATTTCGAGTTCTTGGGAAA-CATAAGTGGTCATCCATATACTCTCCATACTAATGTTT 419
|||||||||||||||||||| | || |||||||||||||||||||||||||||||||||
Sbjct 363 TGATTTCGAGTTCTTGGGAAATCTTA-GTGGTCATCCATATACTCTCCATACTAATGTTT 421
Query 420 ACACAAAAGGCACAGGAGACAAAGAACAACAATTTCATCTATGGTTCGACCCAACCGTTA 479
||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 422 ACACAAAAGGCTCTGGAGATAAAGAACAACAATTTCATCTATGGTTCGACCCAACCGTTA 481
Query 480 ACTTTCACACTTATTGCATCACATGGAATCCTCAAAGGATTATTTTTACGGTTGATGGAA 539
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 482 ACTTTCACACTTATTGCATCACATGGAATCCCCAAAGGATTATTTTTACAGTTGATGGAA 541
Query 540 TTCCTATTAGAGAGTTCAAGAACCCCGAGGCGATTGGAGTCCCGTTCCCAACTA-GACAA 598
|||| ||||||||||||||||| ||||| | |||||||| ||||||||||| | | |||
Sbjct 542 TTCCCATTAGAGAGTTCAAGAATTCCGAGTCAATTGGAGTTCCGTTCCCAACGAAG-CAA 600
Query 599 CCAATGAGACTCTACGCGAGTCTTTGGGAAGCCGAGCATTGGGCAACAAGAGGAGGATTA 658
|||||||| |||||||||||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 601 CCAATGAGGCTCTACGCGAGTCTATGGGAAGCCGAGCATTGGGCTACAAGGGGAGGATTA 660
Query 659 GAGAAAACAGATTGGTCAAAAGCTCCTTTTACTGCTTTTTATAGAAACTACAATGTCGAT 718
|||||||||||||||||||| ||||||||||| ||||| || |||||||||||||| |||
Sbjct 661 GAGAAAACAGATTGGTCAAAGGCTCCTTTTACCGCTTTCTACAGAAACTACAATGTTGAT 720
Query 719 GGATGTGTATGGGCTAATGGAAAATCATCTTGTTCCGCGAATTCCCCATGGTTCACTCAA 778
|| |||||||||||||||||||||||||||||| || ||||||| |||||||||||||||
Sbjct 721 GGGTGTGTATGGGCTAATGGAAAATCATCTTGTCCCACGAATTCTCCATGGTTCACTCAA 780
Query 779 AAACTCGATTCGAACGGCCAGACAAGAATGAAAGGTGTGCAAAGTAAATACATGATCTAC 838
|||||||||| ||||||||||||||||||||||| || || ||||| |||||| |||||
Sbjct 781 CAACTCGATTCAAACGGCCAGACAAGAATGAAAGGAGTACAGAGTAAGTACATGGTCTAC 840
Query 839 AACTATTGCACCGATAAAAGAAGGTTTCCTCGAGGAGTTCCTGCCGAGTGCACTTAAATT 898
||||||||||||||||||| ||||||||||||||| ||||| || ||||||| |||||||
Sbjct 841 AACTATTGCACCGATAAAAAAAGGTTTCCTCGAGGTGTTCCAGCAGAGTGCAGTTAAATT 900
Query 899 CTTGATTCTTTGATACATGAATATGTTACTTGGCATT 935
||||||||||||| | |||||| ||||| | |||||
Sbjct 901 GTTGATTCTTTGATTCGTGAATAAGTTACATAGCATT 937
> Ahg491721 jgi|Araly1|491721|fgenesh2_kg.7__1154__AT4G30290.1
Length=961
Score = 1101 bits (596), Expect = 0.0
Identities = 796/891 (89%), Gaps = 20/891 (2%)
Strand=Plus/Plus
Query 71 TTTGCGTTCTT-ACTTCTGTTTCTTC-TTGCGGCACAATCTGTGCA-TGTCTATGCGGGT 127
||||||||||| | |||| |||| || |||| ||||||||| || | |||||||| ||
Sbjct 56 TTTGCGTTCTTGA-TTCTCTTTC-TCTTTGCAGCACAATCTATG-AGCGTCTATGCAGGC 112
Query 128 AGCTTCCACAAAGACGTTCAGATACATTGGGGTGATGGCCGCGGAAAGATTCACGACAGA 187
||||| |||||||||||| | ||||||||||||||||| || |||||||||||||| | |
Sbjct 113 AGCTTTCACAAAGACGTTAAAATACATTGGGGTGATGGTCGAGGAAAGATTCACGATA-A 171
Query 188 -GATGGAAAACTTCTTTCTCTCTCGCTCGACAAATCCTCTGGATCCGGTTTTCAGTCTAA 246
|| || |||||||||||||||||||| |||||||| ||||| || ||||| || |||||
Sbjct 172 TGAAGGGAAACTTCTTTCTCTCTCGCTTGACAAATCTTCTGGTTCAGGTTTCCAATCTAA 231
Query 247 CCAGGAGTTTCTCTATGGCAAAGCCGAGGTTCAAATGAAACTTGTTCCTGGTAATTCAGC 306
|| ||||||||||||||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 232 TCAAGAGTTTCTCTATGGCAAAGCCGAGGTTCAAATGAAACTTGTCCCTGGTAACTCTGC 291
Query 307 TGGAACAGTGACAACATTCTATCTAAAATCTCCGGGAACTACGTGGGATGAGATCGATTT 366
|||||| || |||||||||||||| ||||||||||||||||| ||||||||||| |||||
Sbjct 292 TGGAACCGTCACAACATTCTATCTTAAATCTCCGGGAACTACATGGGATGAGATTGATTT 351
Query 367 CGAGTTCTTGGGAAACATAAGTGGTCATCCATATACTCTCCATACTAATGTTTACACAAA 426
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 352 CGAGTTCTTGGGGAACATAAGTGGTCATCCATATACTCTCCACACTAATGTTTACACAAA 411
Query 427 AGGCACAGGAGACAAAGAACAACAATTTCATCTATGGTTCGACCCAACCGTTAACTTTCA 486
|||| ||||||||||||||||||| |||||||||||||| |||||||||| |||||| ||
Sbjct 412 AGGCTCAGGAGACAAAGAACAACAGTTTCATCTATGGTTTGACCCAACCGCTAACTTCCA 471
Query 487 CACTTATTGCATCACATGGAATCCTCAAAGGATTATTTTTACGGTTGATGGAATTCCTAT 546
|||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 472 CACTTACTGCATCACATGGAATCCTCAAAGGATTATTTTTACTGTTGATGGGATTCCAAT 531
Query 547 TAGAGAGTTCAAGAACCCCGAGGCGAT-TGGAGTCCCGTTCCCAACTA-GACAACCAATG 604
||||||||||| ||| ||||| | | ||||||||| |||||||| | | |||||||||
Sbjct 532 TAGAGAGTTCATGAATGCCGAGTC-ACGTGGAGTCCCATTCCCAACGAAG-CAACCAATG 589
Query 605 AGACTCTACGCGAGTCTTTGGGAAGCCGAGCATTGGGCAACAAGAGGAGGATTAGAGAAA 664
|| ||||| |||||||| |||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 590 AGGCTCTATGCGAGTCTCTGGGAAGCTGAGCATTGGGCTACAAGGGGAGGATTAGAGAAA 649
Query 665 ACAGATTGGTCAAAAGCTCCTTTTACTGCTTTTTATAGAAACTACAATGTCGATGGATGT 724
||||||||||||||||||||||| || |||||||| ||||||||||||||||| ||||||
Sbjct 650 ACAGATTGGTCAAAAGCTCCTTTCACCGCTTTTTACAGAAACTACAATGTCGAAGGATGT 709
Query 725 GTATGGGCTAATGGAAAATCATCTTGTTCC-GCGAATTCCCCATGGTTCACTCAAAAACT 783
|| |||||||||||||||||| ||||| || || ||||| | ||||||||||||||||||
Sbjct 710 GTTTGGGCTAATGGAAAATCAGCTTGT-CCAGCAAATTCTCAATGGTTCACTCAAAAACT 768
Query 784 CGATTCGAACGGCCAGACAAGAATGAAAGGTGTGCAAAGTAAATACATGATCTACAACTA 843
||||||||| ||||||| |||||||||||| || ||||||||||||||| | ||||||||
Sbjct 769 CGATTCGAATGGCCAGAAAAGAATGAAAGGGGTACAAAGTAAATACATGGTTTACAACTA 828
Query 844 TTGCACCGATAAAA-GAAGGTTTCCTCGAGGAGTTCCTGCC-GAGTGCA-CTTAAATTCT 900
|||||||||||||| || ||||||||||||| |||||| || ||||||| || ||||| |
Sbjct 829 TTGCACCGATAAAAAGA-GGTTTCCTCGAGGTGTTCCT-CCAGAGTGCAGCT-AAATTAT 885
Query 901 TGATTCTTTGATACATGAATATGTTACTTGGCATTGCCTTTGTAACTCAAT 951
|||||||||||| | |||||| |||||||||||||| ||||||||||||||
Sbjct 886 TGATTCTTTGATTCGTGAATAAGTTACTTGGCATTGTCTTTGTAACTCAAT 936
> Ahg494858 jgi|Araly1|494858|fgenesh2_kg.8__674__AT5G48070.1
Length=1102
Score = 915 bits (495), Expect = 0.0
Identities = 754/875 (86%), Gaps = 34/875 (4%)
Strand=Plus/Plus
Query 89 TTTCTTCTT-GCGGCACAATCTGTGCATGTCTATGCGGGTAGCTTCCACAAAGACGTTCA 147
|||| |||| || ||||||| || || ||||||||| |||||||| ||||| ||||||||
Sbjct 87 TTTC-TCTTCGCTGCACAATATGAGCGTGTCTATGCTGGTAGCTTTCACAAGGACGTTCA 145
Query 148 GATACATTGGGGTGATGGCCGCGGAAAGATTCACGACAGA-GAT-GGAAAACTTCTTTCT 205
|||||| |||||||||||||| |||||||||| ||||| | | | ||||| |||||||||
Sbjct 146 GATACACTGGGGTGATGGCCGTGGAAAGATTCTCGACA-ATG-TCGGAAATCTTCTTTCT 203
Query 206 CTCTCGCTCGACAAATCCTCTGGATCCGGTTTTCAGTCTAACCAGGAGTTTCTCTATGGC 265
|||||||||||||||| |||||| |||||||||||||| | || |||||||| |||||
Sbjct 204 CTCTCGCTCGACAAATTCTCTGGTTCCGGTTTTCAGTCCCATCAAGAGTTTCTATATGGA 263
Query 266 AAAGCCGAGGTTCAAATGAAACTTGTTCCTGGTAATTCAGCTGGAACAGTGACAACATTC 325
|||| |||||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 264 AAAGTTGAGGTTCAAATGAAACTTGTACCTGGTAACTCTGCTGGAACAGTGACAACATTC 323
Query 326 TATCTAAAATCTCCGGGAACTACGTGGGATGAGATCGATTTCGAGTTCTTGGGAAACATA 385
||||||||||| || |||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 324 TATCTAAAATCGCCTGGAACTACGTGGGATGAGATAGATTTTGAGTTCTTGGGAAACATA 383
Query 386 AGTGGTCATCCATATACTCTCCATACTAATGTTTACACAAAAGGCACAGGAGACAAAGAA 445
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 384 AGTGGTCATCCATATACACTTCATACTAATGTTTACACAAAAGGCACAGGAGACAAAGAA 443
Query 446 CAACAATTTCATCTATGGTTCGACCCAACCGTTA-ACTTTCACACTTATTGCATCACATG 504
||||| |||||||||||||| |||||||| || | |||||||||||||||| |||| |||
Sbjct 444 CAACAGTTTCATCTATGGTTTGACCCAACTGT-ACACTTTCACACTTATTGTATCATATG 502
Query 505 GAATCCTCAAAGGATTATTTTTACGGTTGATGGAATTCCTATTAGAGAGTTCAAGAACCC 564
|||||| |||||| | |||||||| | ||||||||||| || ||||| ||||||||| |
Sbjct 503 GAATCCCCAAAGGGTCATTTTTACAATAGATGGAATTCCGATAAGAGAATTCAAGAACTC 562
Query 565 CGAGGC-GATTGGAGT-CCCGTTCCCAACTAG-A-CAACCAATGAGACTCTACGCGAGTC 620
||| | | ||||||| ||| ||||||| || | ||||||||||||||||| ||||| |
Sbjct 563 CGAATCCG-TTGGAGTTCCC-TTCCCAA--AGCATCAACCAATGAGACTCTATGCGAGCC 618
Query 621 TTTGGGAAGCCGAGCATTGGGCAACAAGAGGAGGATTAGAGAAAACAGATTGGTCAAAAG 680
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 619 TTTGGGAAGCCGAGCATTGGGCCACAAGAGGAGGATTAGAGAAAACAGACTGGTCCAAAG 678
Query 681 CTCCTTTTACTGCTTTTTATAGAAACTACAATGTCGATGGATGTGTATGGGCTAATGGAA 740
||||||| || ||||| || |||||||||||||| |||| ||||||||||||| ||||||
Sbjct 679 CTCCTTTCACCGCTTTCTACAGAAACTACAATGTGGATGCATGTGTATGGGCTCATGGAA 738
Query 741 AATCATCTTGTTCCGCGAATTCCCCATGGTTCACTCAAAAACTCGATT-CGAACGGCCAG 799
||||||| || || ||| ||||| |||||||||||||| ||| |||| | || ||| ||
Sbjct 739 AATCATCATGCTCTGCGCATTCCTCATGGTTCACTCAAGTACTTGATTTCAAA-GGCAAG 797
Query 800 ACA-AGAATGAAAGGTGTGCA-A-AGTAAA-TACATGATCTACAACTATTGCACCGATAA 855
| | ||| ||||| | | ||| | || ||| |||||| |||||||||||||||| |||||
Sbjct 798 A-ATAGAGTGAAATG-G-GCACAGAG-AAAGTACATGGTCTACAACTATTGCACTGATAA 853
Query 856 -AAGAAGGTTTCCTCGAGGAGTTCCTGCC-GAGTGCACTTAAATT-CTTGATTCTTTGAT 912
|| ||| ||||||| ||| | |||| || ||||||| |||||| || |||| ||||||
Sbjct 854 GAA-AAGATTTCCTCAAGGTGCTCCT-CCAGAGTGCAGTTAAATCACT-GATTGTTTGAT 910
Query 913 ACATGAATATGTTACT-TGGCATTGCCTTTGTAAC 946
|| ||||| | | | |||||||| ||||||||
Sbjct 911 TCACGAATAAATCA-TGTGGCATTGTTTTTGTAAC 944
> Ahg475586 jgi|Araly1|475586|fgenesh2_kg.2__716__AT4G30280.1
Length=993
Score = 911 bits (493), Expect = 0.0
Identities = 521/535 (97%), Gaps = 0/535 (0%)
Strand=Plus/Plus
Query 44 AAAATGAAGCTTTCTTGTGGTACAAGCTTTGCGTTCTTACTTCTGTTTCTTCTTGCGGCA 103
|||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||| |
Sbjct 27 AAAATGAAGCTTTCTTGTGGTACAAGTTTTTCGTTCTTAATTCTGTTTCTTCTTGCGGGA 86
Query 104 CAATCTGTGCATGTCTATGCGGGTAGCTTCCACAAAGACGTTCAGATACATTGGGGTGAT 163
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 87 CAATATGTGCATGTCTATGCGGGTAGCTTCCACAAAGACGTTCAGATACATTGGGGTGAT 146
Query 164 GGCCGCGGAAAGATTCACGACAGAGATGGAAAACTTCTTTCTCTCTCGCTCGACAAATCC 223
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 147 GGCCGCGGAAAGATTCACGACAAAGATGGAAAACTTCTTTCTCTCTCGCTCGACAAATCC 206
Query 224 TCTGGATCCGGTTTTCAGTCTAACCAGGAGTTTCTCTATGGCAAAGCCGAGGTTCAAATG 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 207 TCTGGATCCGGTTTTCAGTCTAACCAGGAGTTTCTCTATGGCAAAGCCGAGGTTCAAATG 266
Query 284 AAACTTGTTCCTGGTAATTCAGCTGGAACAGTGACAACATTCTATCTAAAATCTCCGGGA 343
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 267 AAACTTGTTCCTGGTAATTCAGCTGGAACAGTAACAACATTCTATCTAAAATCGCCGGGA 326
Query 344 ACTACGTGGGATGAGATCGATTTCGAGTTCTTGGGAAACATAAGTGGTCATCCATATACT 403
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 327 ACTACGTGGGATGAGATCGATTTCGAGTTCTTGGGAAACATAAGTGGTCATCCGTATACT 386
Query 404 CTCCATACTAATGTTTACACAAAAGGCACAGGAGACAAAGAACAACAATTTCATCTATGG 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 CTCCATACTAATGTTTACACAAAAGGCACAGGAGACAAAGAACAACAATTTCATCTATGG 446
Query 464 TTCGACCCAACCGTTAACTTTCACACTTATTGCATCACATGGAATCCTCAAAGGATTATT 523
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 447 TTCGACCCAACCGTTAACTTTCACACTTATTGCATCACATGGAATCCCCAAAGGATTATT 506
Query 524 TTTACGGTTGATGGAATTCCTATTAGAGAGTTCAAGAACCCCGAGGCGATTGGAG 578
||||||||||||||||||||||||||||||||||| ||| | ||||| |||||||
Sbjct 507 TTTACGGTTGATGGAATTCCTATTAGAGAGTTCAAAAACTCTGAGGCAATTGGAG 561
Score = 606 bits (328), Expect = 8e-173
Identities = 411/448 (92%), Gaps = 17/448 (4%)
Strand=Plus/Plus
Query 604 GAGACTCTACGCGAGTCTTTGGGAAGCCGAGCATTGGGCAACAAGAGGAGGATTAGAGAA 663
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 559 GAG-CTCTACGCGAGTCTCTGGGAAGCCGAGCATTGGGCAACAAGAGGAGGATTAGAGAA 617
Query 664 AACAGATTGGTCAAAAGCTCCTTTTACTGCTTTTTATAGAAACTACAATGTCGATGGATG 723
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 618 AACAGATTGGTCAAAAGCTCCTTTTACTGCTTTCTACAGAAACTACAATGTCGATGGATG 677
Query 724 TGTATGGGCTAATGGAAAATCATCTTGTTCCGCGAATTCCCCATGGTTCACTCAAAAACT 783
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 678 -GTATGGGCTAACGGAAAATCATCATGTTCCGCGAATTCCCCATGGTTCACTCAAAAACT 736
Query 784 CGATTCGAACGGCCAGACAAGAATGAAAGGTGTGCAAAGTAAATACATGATCTACAACTA 843
|||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 737 CGATTCAAATGGCCAGACAAGAATGAAAGGTGTACAAAGTAAATACATGATCTACAACTA 796
Query 844 TTGCACCGATAAAAGAAGGTTTCCTCGAGGA-GTTCCTGCCGAGTGCACTTAAATTCTTG 902
||||||||||||||||||||||||||| | | |||||||| | ||||||||||||| |||
Sbjct 797 TTGCACCGATAAAAGAAGGTTTCCTCGCG-ATGTTCCTGCAGTGTGCACTTAAATTGTTG 855
Query 903 ATTCTTTGATACATGAATATGTTACTTGGCATTGCCTTTGTAACTCAATCAAGtttttat 962
|||||||||| ||||| ||||||||| ||||||||||||||||||| ||||||||||
Sbjct 856 ATTCTTTGAT----GAATAAGTTACTTGGTATTGCCTTTGTAACTCAATTAAGTTTTTAT 911
Query 963 ttatttttatcatttatttGTTGCTCATATATACAGTATGTGGTGTTTGTGTAA-GATGT 1021
|||||||||||||||||||||||||||||||| | ||||||||| ||||| |||||
Sbjct 912 CTATTTTTATCATTTATTTGTTGCTCATATATA---T--GTGGTGTTTATGTAAAGATGT 966
Query 1022 TTTAAGATTGAAGTAATAAAAATAAATT 1049
|| | | ||||||||||| |||||||
Sbjct 967 TTGCA-A--GAAGTAATAAATATAAATT 991
> Ahg495852 jgi|Araly1|495852|fgenesh2_kg.8__1668__AT5G57530.1
Length=934
Score = 73.1 bits (39), Expect = 4e-12
Identities = 225/311 (72%), Gaps = 28/311 (9%)
Strand=Plus/Plus
Query 350 TGGGATGAGATCGATTTCGAGTTCTTGGGAAACATAAGTGGTCATCCATATACTCTCCAT 409
||||||||||||||||||||||||||||| ||| | | || || || ||| |||||||
Sbjct 308 TGGGATGAGATCGATTTCGAGTTCTTGGGTAACGTTACCGGACAGCCTTATGTTCTCCAT 367
Query 410 ACTAATGT-TT-ACACAAAAGGCACAGGAGACAAAGAACAA-CAATT-TCATCTATGGTT 465
|| ||||| || || | | || | ||| ||| ||| | || || | |||| |||||
Sbjct 368 ACAAATGTGTTTAC-CGGA-GGTAAAGGTGACCGCGAA-ATGCAGTTCT-ATCTCTGGTT 423
Query 466 CGA-CCCAACCGTTAACTTTC-ACACTTATTGCATCACAT-GGAATCCTCA-AAGGATTA 521
|| |||| | | | |||| ||||||| | || | | ||||||||| || || |
Sbjct 424 TGATCCCA-CTGCGGA-TTTCCACACTTACACCGTC-CTTTGGAATCCTCTTAAC-ATCA 479
Query 522 TTTTTACG-GTTGATGGAATTCCTATTAGAGAGTTCAAGAACCCCGAGGCGATTGGAGTC 580
| ||| | || || || || || || | | |||||||||| |||||| | || ||
Sbjct 480 TCTTT-CTTGTGGACGGGATCCCAATCCGGGTGTTCAAGAACAACGAGGCTAACGGCGTT 538
Query 581 CCGTT-CCC-AACTAGAC-AACCAATGA-GACTCTACGCGAGTCTTTGGGAAGCCGA-GC 635
| || ||| || | || ||||||||| || ||||| |||||||||||||||| || |
Sbjct 539 GC-TTACCCGAAA-A-ACCAACCAATGAAGA-TCTACTCGAGTCTTTGGGAAGCTGATG- 593
Query 636 ATTGGGCAACA 646
||||||| |||
Sbjct 594 ATTGGGCCACA 604
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39037867008
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5