BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65320.1
Length=1865
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475589 jgi|Araly1|475589|fgenesh2_kg.2__719__AT1G65320.1 2152 0.0
> Ahg475589 jgi|Araly1|475589|fgenesh2_kg.2__719__AT1G65320.1
Length=1484
Score = 2152 bits (1165), Expect = 0.0
Identities = 1415/1528 (93%), Gaps = 47/1528 (3%)
Strand=Plus/Plus
Query 304 TTTAATGGCGTCAGTGTTCTTGTATCATGTGGTGGGAGATTTAACTGTAGGAAAGCCAGA 363
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1 TTTAATGGCGTCAGTGTTCTTGTATCACGTAGTGGGAGATTTAACTGTAGGAAAGCCAGA 60
Query 364 GATGGTTGAGTTCTACGAAACAGAGACGGTGGAATCTGCGATTAGAGCTATCGGAGAATC 423
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 61 GATGGTTGAGTTCTACGAAACAGAGACGGTGGAATCTGCGATTAGAGCCATCGGAGAGTC 120
Query 424 GACGGAGTGTGGGATTCCGGTTTGGAGGAAGAGAACGACACCTTCGCTTCCTGGGTTTGT 483
|||||||||||||||||||||||||||||||||| |||| || |||||||| |||||
Sbjct 121 GACGGAGTGTGGGATTCCGGTTTGGAGGAAGAGATCGACGCCGAATCTTCCTGGATTTGT 180
Query 484 TGAGAATAGTGAGATGAGACAACAAAGATTCGTTGGGATTTTGAATTCTTTAGATATCGT 543
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 GGAGAATAGTGAGATGAGACAACAAAGATTTGTTGGGATTTTGAATTCTTTAGATATCGT 240
Query 544 TGCGTTTTTGGCTAAGACTGAGTGTTTGCAAGAAGAAAAAGCTATGAAGATTCCTGTCTC 603
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 TGCGTTTTTGGCTAAGAGTGAGTGTTTGCAAGAAGATAAAGCTATGAAGATTCCTGTCTC 300
Query 604 TGAGGTTGTTTCTCCTGACAATACTCTA-TTGAAACAGGTTGATCCTGGGACTAGGTTGA 662
|||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||
Sbjct 301 TGAGGTTGTTTCTCCTGACAATACTCTACTT-AAACAGGTTGATCCTGGGACAAGGTTGA 359
Query 663 TAGATGCTTTGGAGATGATGAAACAAGGAGTGAGACGACTTCTGGTTCCAAAAAGCGTTG 722
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 360 TAGATGCTTTGGAGATGATGAAACAAGGAGTGAGACGACTTCTGGTTCCGAGAAGCGTTG 419
Query 723 TTTGGAGAGGTATGAGCAAGAGGTTCTCCATTCTTTACAATGGAAAATGGCTGAAGAACA 782
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 420 TTTGGAGAGGTATGAGCAAGAGATTCTCCATTCTTTACAATGGAAAATGGCTGAAGAACA 479
Query 783 GTGAAAACTCTAGTAGTAGCAGTGGTCTCTCTGCTGACTCCACCAACAGGCCTACTACGT 842
||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||
Sbjct 480 GTGAAAACTCTAGTAGTAGTAGTGGTCTCGCTGCTGATTCCACCAACAGGCCTACTACGT 539
Query 843 CCATGACTTCAAGCCGGGACAAGTTTTGTTGTCTCTCTAGGGAAGACGTGATCCGCTTCC 902
|||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 540 CCATGACTTCAAGCCGGGACAAGTTTTGCTGTCTGTCAAGGGAAGACGTGATCCGCTTCC 599
Query 903 TTATAGGTGTCCTTGGAGCATTAGCTCCTTTACCACTCACATCAATCTCCACTCTGGGAA 962
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 600 TTATAGGTGTCCTTGGAGCATTAGCACCTTTACCACTCACATCAATCTCCACTCTGGGAA 659
Query 963 TCATCAATCAAAACTATAACTTCATTGAAGCCTCTCTTCCAGCCATTGAAGCCACTCGTA 1022
||||||||||||||||||||||||||||||| |||||||||||||| |||||||| || |
Sbjct 660 TCATCAATCAAAACTATAACTTCATTGAAGCTTCTCTTCCAGCCATCGAAGCCACCCGAA 719
Query 1023 GGCCACTGTGTGACCCTAGTGCGATCGCCGTGTTGGAACAAACCGAAAACGAACAACAGT 1082
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GGCCACCATGTGACCCCAGTGCGATCGCCGTGTTGGAACAAACCGAAAACGAACAACAGT 779
Query 1083 TCAAGATAATAGGAGAAATCTCAGCTTCAAAGCTCTGGAAATGTGATTATCTAGCTGCAG 1142
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 780 TCAAGATAATAGGAGAAATCTCAGCTTCAAAGCTTTGGAAATGTGATTATCTGGCTGCAG 839
Query 1143 CTTGGGCTCTAGCTAATCTCTATGCAGGACAATTTGTGATGGGAGTTGAGGACAACATGT 1202
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CTTGGGCTCTAGCTAATCTATATGCAGGACAATTTGTGATGGGAGTTGAGGACAACATGT 899
Query 1203 CATCAAGATCATTCAGCGACTTCCTCCAAACTTCATTTCCAGGAGGAGAACAGAACGGAA 1262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CATCAAGATCATTCAGCGACTTCCTCCAAACTTCATTTCCAGGAGGAGAACAGAACGGAA 959
Query 1263 CAGCAACAAATGCCAAGAAGTTCAGCAGCAGGAGCATCGGTTTTAATCCGACAAGCCCGA 1322
|| | |||| ||||| || |||||||||||||| || ||||||||||| ||||||||||
Sbjct 960 CA--A-CAAAGGCCAAAAAATTCAGCAGCAGGAGTATAGGTTTTAATCCAACAAGCCCGA 1016
Query 1323 CAAGATTGAGCATCGGTAGGAGCATGTACAGAGGAAGAAGTGCGCCGCTAACTTGCAAAA 1382
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1017 CAAGATTAAGCATCGGTAGGAGCATGTACAGAGGAAGAAGTGCGCCGTTAACTTGCAAAA 1076
Query 1383 CATCGAGCTCATTAGCTGCTGTTATGGCTCAGATGCTGTCTCACAGGGCTACTCATGTTT 1442
||||||||||||||||||| || |||||||||||||| ||||||||||| || |||||||
Sbjct 1077 CATCGAGCTCATTAGCTGCAGTCATGGCTCAGATGCTATCTCACAGGGCCACACATGTTT 1136
Query 1443 GGGTTACAGAGGCTGATTCAGATGATGTTCTTGTTGGAGTTGTGGGCTATGGAGAGATCT 1502
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1137 GGGTTACAGAGGCTGATTCAGATGATGTTCTTGTTGGAGTTGTGGGCTATGGAGAAATCT 1196
Query 1503 TGACTGCTGTAACTAAACAACCTTCTGCTTTCGTTCCTTCGAATCGGTCTTATGAAGGTT 1562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 TGACTGCTGTAACTAAACAACCTTCTGCTTTCGTTCCTTCGAATCGGTCTTATGAAGGTT 1256
Query 1563 TTGGCAATGAAAATCAAAGCTAAGACTACAATaaaaaaaaaaGATGGTCTCATTTCTGTC 1622
||||||||||||||||||| |||||||||||| |||| | || |||
Sbjct 1257 TTGGCAATGAAAATCAAAGTTAAGACTACAATCAAAA-------T---CT-------GTC 1299
Query 1623 TGTTATCCTGTGAGACGTTCTCAGGATAGAAGGATAATATTTTTGGGTGCTTAGTCAATT 1682
| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1300 TATTATCCTGTGAGACGTTCTCAAGATAGAAGGATAATATTTTTGGGTGTTTAGTCAATT 1359
Query 1683 TGTTATTGGGTACTACTAGTGTCAAGAAGCAAAGTTTAATCATCTTGTGTCCTGTGAAAA 1742
||| | | | | ||| | || | || | | | | | ||||||| || |||
Sbjct 1360 TGTAA--GC--A--A--AGT-T-AA-AT-CA---TCT--T--T-T-GTGTCCTCTGGAAA 1398
Query 1743 AAGTTGCTTTTGAGACGTTCTATGGATAGAAGGATT--ATATTCTTGGGTGTTCAGTCAA 1800
| |||||||||||||||| ||| ||||||||||||| |||||||||||| |||||||||
Sbjct 1399 A-GTTGCTTTTGAGACGT-CTAAGGATAGAAGGATTTTATATTCTTGGGTATTCAGTCAA 1456
Query 1801 TTTGTGTACTATTGAATCTATTGTCAGA 1828
||||| ||||||||| |||| |||||||
Sbjct 1457 TTTGTATACTATTGAGTCTAGTGTCAGA 1484
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70047960555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5