BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65340.1
Length=1512
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495302 jgi|Araly1|495302|fgenesh2_kg.8__1118__AT5G52320.1 1567 0.0
Ahg475591 jgi|Araly1|475591|fgenesh2_kg.2__721__AT1G65340.1 1424 0.0
Ahg907906 jgi|Araly1|907906|Al_scaffold_0002_987 1031 0.0
Ahg338681 jgi|Araly1|338681|fgenesh1_pg.C_scaffold_2000780 950 0.0
Ahg925517 jgi|Araly1|925517|scaffold_201078.1 939 0.0
Ahg932132 jgi|Araly1|932132|scaffold_400120.1 255 5e-67
> Ahg495302 jgi|Araly1|495302|fgenesh2_kg.8__1118__AT5G52320.1
Length=1662
Score = 1567 bits (848), Expect = 0.0
Identities = 1297/1515 (86%), Gaps = 26/1515 (2%)
Strand=Plus/Plus
Query 11 TCATAGGTTTACTTGAAATCTTCACAGCATTTGTTTTCTTCATTTTCTTCCAATGTTTAT 70
||||||| |||||||||||||||| | | || |||||||| || || ||| ||||| |
Sbjct 73 TCATAGGCTTACTTGAAATCTTCATAACCTTCATTTTCTTCCTTGCCTACCAGTGTTTCT 132
Query 71 TACTCCACAAGAAAACTCCCAAGCCTTTGCTCACGAACTGGCCGGCCCTTGGGATGCTTC 130
||||||||||||||||| |||| | || | ||||||||||||| ||||||||||||||
Sbjct 133 CGCTCCACAAGAAAACTCCAAAGCATATGGTTACGAACTGGCCGGTCCTTGGGATGCTTC 192
Query 131 CGGGTCTACTCCTCCA-AGTGCCTCGTATCTACGAC-TGGATCACCGAGGTTCTTGA-GG 187
||||| | ||||||| | | |||||| |||| ||| ||| |||| |||| |||||| ||
Sbjct 193 CGGGTGTGGTCCTCCACA-TCCCTCGTGTCTATGACTTGG-TCACTGAGGCTCTTGAGGG 250
Query 188 CGACAGATATGACGTTTTGTTTCAAAGGTCCAT-GTCTTAGCGGAATGGACATCTTGCTT 246
|| | |||||||| |||||||| ||| |||| || |||| |||| ||||| || |
Sbjct 251 AGA-AAATATGACGGGTTGTTTCATAGGGCCATGGT-TTAGTGGAACAGACATATTAATC 308
Query 247 ACTGTTGATCCGGTGAATATCCACTACATTCTAAGCTCAAATTTTGCTAACTACCCCAAA 306
|||| ||| |||||||||||||| ||||||||||| ||||| || | ||| ||||| |||
Sbjct 309 ACTGCTGACCCGGTGAATATCCAGTACATTCTAAGTTCAAACTTCGTTAATTACCCTAAA 368
Query 307 -GGAATGGAGTTCAAGAAGATCTTCGAAGTCGTGGGTGATTCAATTTTCAACGTTGACTC 365
|||| | |||| || |||||||| ||| || |||| ||| |||||||||||||||||
Sbjct 369 GGGAA-GAAGTTTAACAAGATCTTTGAATTCTTGGGAGATGGGATTTTCAACGTTGACTC 427
Query 366 GGGTTTGTGGGAGGATATGAGGAA-CTCGTCTCATGCCATTTTTAGTAATCAAGATTTCC 424
|||||||||||||||||||| ||| |||||||||||| ||||| || ||||||||||||
Sbjct 428 GGGTTTGTGGGAGGATATGA-GAATCTCGTCTCATGCGATTTTCAGCCATCAAGATTTCC 486
Query 425 AAATG-TTCTGGGTGAGTACAAGTGTAAGAAAATTAAGGCAAGGGCTTGTTCCTATTCTT 483
||| | || | |||||| ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 487 AAA-GTTTTTCGGTGAGCACAAGCGTAAGCAAATTAAGGCAAGGGCTTGTTCCTATTCTT 545
Query 484 GAAAACGCAGCTGATAAAAATATCCTTGTCGACTTGCAAGATTTGTTCCAGAGATTCTTG 543
|| ||||| | ||| ||| | || |||||||||||||||||| |||||||||||||||||
Sbjct 546 GATAACGCTGTTGAGAAACACATTCTTGTCGACTTGCAAGATGTGTTCCAGAGATTCTTG 605
Query 544 TTTGATACATCTTTGATTTTGATGACCGGGTATGATCCAAAATGTTTATCCGTTGAAATG 603
||||| ||||||| || ||||||||| |||||||||||||||| | | ||| ||||||||
Sbjct 606 TTTGACACATCTTCGACTTTGATGACTGGGTATGATCCAAAATCTCTCTCCATTGAAATG 665
Query 604 CCTAAGGTTGAGTTCGGTGACGCGGTCGATGGTGTTTCTGACGGGGTTTTCTATAGACAT 663
|||||||||||||||| ||| ||| | ||||| ||| | || | | | ||||||||||||
Sbjct 666 CCTAAGGTTGAGTTCGCTGATGCGATGGATGGAGTTGCAGATGCGATGTTCTATAGACAT 725
Query 664 GTTAAGCCGGTTTTCTTGT-GGAGGCTCCAATATTTGATTGGTGTAGGAGTAGAGAA-AA 721
| ||||||| |||| ||| ||| |||||||| || ||| ||||||||||||||||| ||
Sbjct 726 CTCAAGCCGGCTTTCCTGTGGGA-GCTCCAATCTTGGATCGGTGTAGGAGTAGAGAAGAA 784
Query 722 GATTGAAAAGAGGTCTAGCGGTATTCGATCAACTACTCGAGAAGATCATAACGGCTAAAC 781
|| ||| ||||||||| ||||| ||||||||| | || | |||||||||| |||||||||
Sbjct 785 GA-TGAGAAGAGGTCTCGCGGTTTTCGATCAAATGCTAGGGAAGATCATATCGGCTAAAC 843
Query 782 GAGAGGAGATCAATAGTCATGGGACTCATCATCCCTCAA-GAGGA-GAGGCCATAGACGT 839
||||||||||||| |||||||||| |||| | | | || || || |||||||| |||||
Sbjct 844 GAGAGGAGATCAAAAGTCATGGGATTCATGA-CTCGAAAGGA-GAGGAGGCCATGGACGT 901
Query 840 GTTGACATACTACATGACTATGGACACGACCAAATATAAGTACTTGGAACCAAGTGATGA 899
|| ||||| ||||||||||| ||||||||||||||||| ||||| |||| ||| | ||
Sbjct 902 TTTAACATATTACATGACTATAGACACGACCAAATATAAACACTTGAAACCGAGTAACGA 961
Query 900 TAGATTCATCAAAGACACTATTTTGGGTTTCTTGATAGCGGCAAGAGATACAACAAGTTC 959
|| |||||||| |||||||||||||||||| ||||||||||||||||| |||||||| ||
Sbjct 962 TAAATTCATCAGAGACACTATTTTGGGTTTTTTGATAGCGGCAAGAGACACAACAAGATC 1021
Query 960 AGCACTCACTTGGTTCTTCTGGCTTATGTCCAAGAACCCTGAGGCAATAAACAAGATCCG 1019
||| ||||||||||| ||||||||| | || ||||||||||| ||||| | |||||||||
Sbjct 1022 AGCTCTCACTTGGTTATTCTGGCTTCTCTCTAAGAACCCTGAAGCAATGACCAAGATCCG 1081
Query 1020 ACAAGAGGTTAACAAGAAGATGCCGAGGTTTGATCCCGCAGATTTAGAAAAGCTCGTGTA 1079
||||||| |||||||||||||||| | |||| |||||||||||||||| |||||||||||
Sbjct 1082 ACAAGAGATTAACAAGAAGATGCCAAAGTTTAATCCCGCAGATTTAGACAAGCTCGTGTA 1141
Query 1080 TCTACACGGTGCCGTGTGTGAGACGCTAAGGTTATACCCACCAGTTCCATTTAACCACAA 1139
|||| | |||||||||||||| ||||||||| |||||||| |||| ||||||||||||||
Sbjct 1142 TCTAGATGGTGCCGTGTGTGAAACGCTAAGGCTATACCCATCAGTCCCATTTAACCACAA 1201
Query 1140 GTCACCGGCAAAGCCAGACGTACTTCCAAGTGGGCATAGAGTAGATGAGAAATGGAAGAT 1199
|||||||||||||||||| || |||||||||||||||||||| |||||||| |||| | |
Sbjct 1202 GTCACCGGCAAAGCCAGATGTTCTTCCAAGTGGGCATAGAGTCGATGAGAATTGGAGGGT 1261
Query 1200 TGTCATATCTATGTATGCATTAGGGAGGATGAAATCTGTTTGGGGAGATGACGCAGAAGA 1259
|| || |||| | |||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1262 AGTAATCCCTATTTTTGCAGTGGGGAGGATGAAATCTGTTTGGGGAGATGACGCAGAAGA 1321
Query 1260 TTT-CAGACCAGAGAGATGGATTTCAGACAGTGGAAGGTTAAAACATGAACCTTCATATA 1318
||| | |||||||||||||||||||||||||||||| ||| | ||| ||| |||||||||
Sbjct 1322 TTTTC-GACCAGAGAGATGGATTTCAGACAGTGGAATGTTGAGACAAGAATCTTCATATA 1380
Query 1319 AGTTCTTGGCGTTTAACGCCGGTCCAAGAGCTTGCTTGGGGAAAAAGTTAACGTTCTTAC 1378
|||| ||||| |||||||| ||||||||| ||||||||||||||| |||||| ||||| |
Sbjct 1381 AGTTTTTGGCATTTAACGCTGGTCCAAGAACTTGCTTGGGGAAAAGGTTAACATTCTTGC 1440
Query 1379 AGATGAAGACAGTGGCTG-CGGAAATCATACGAAACTATGACATCAAGGTCGTTGAAGGG 1437
|| |||||||||| || | || |||||||| ||||||||||||| |||||||||||||||
Sbjct 1441 AGGTGAAGACAGTAGCGGTCG-AAATCATAAGAAACTATGACATTAAGGTCGTTGAAGGG 1499
Query 1438 CACAAAACCGAACCAGTTCCTTCTGTTCTTTTTCGTATGCAACATGGTCTCAAAGTTAAT 1497
|||||| || ||||||||||||| |||||| |||| |||||||||||||||||||||| |
Sbjct 1500 CACAAACCCAAACCAGTTCCTTCCGTTCTTCTTCGCATGCAACATGGTCTCAAAGTTAGT 1559
Query 1498 ATCACTAGGATCTAG 1512
|||||| ||| |||
Sbjct 1560 GTCACTAAGATTTAG 1574
> Ahg475591 jgi|Araly1|475591|fgenesh2_kg.2__721__AT1G65340.1
Length=1380
Score = 1424 bits (771), Expect = 0.0
Identities = 897/959 (94%), Gaps = 4/959 (0%)
Strand=Plus/Plus
Query 315 GTTCAAGAAGATCTTCGAAGTCGTGGGTGATTCAATTTTCAACGTTGACTCGGGTTTGTG 374
||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 258 GTTTAAGAAGATCTTTGAAGTCGTGGGTGATTCCATTTTCAACGTTGACTCGGGTTTGTG 317
Query 375 GGAGGATATGAGGAACTCGTCTCATGCCATTTTTAGTAATCAAGATTTCCAAATGTTCTG 434
|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 318 GGAGGATATGAGGAACTCGTCTCATGCCATTTTTAGCCATCAAGATTTCCAAAGGTTCTG 377
Query 435 GGTGAGTA-CAAGTGTAAGA-AAATTAAGGCAAGGGCTTGTTCCTATTCTTGAAAACGCA 492
|||||| | ||||||||| | |||||||||||||||||||||||||||||||| ||| |
Sbjct 378 GGTGAG-AGCAAGTGTAA-ACAAATTAAGGCAAGGGCTTGTTCCTATTCTTGAGAACACT 435
Query 493 GCTGATAAAAATATCCTTGTCGACTTGCAAGATTTGTTCCAGAGATTCTTGTTTGATACA 552
|||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 436 GCTGATAAAAATATTCTTGTAGACTTCCAAGATTTGTTCCAGAGATTCTTGTTTGATACA 495
Query 553 TCTTTGATTTTGATGACCGGGTATGATCCAAAATGTTTATCCGTTGAAATGCCTAAGGTT 612
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 496 TCTTTGATTTTGATGACCGGGTATGATCCAAAATGTTTATCCATTGAAATGCCTAAAGTC 555
Query 613 GAGTTCGGTGACGCGGTCGATGGTGTTTCTGACGGGGTTTTCTATAGACATGTTAAGCCG 672
||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 556 GAGTTTGGTGACGCGGTTGATGGTGTTTCAGACGGGGTTTTCTATAGGCATGTTAAGCCG 615
Query 673 GTTTTCTTGTGGAGGCTCCAATATTTGATTGGTGTAGGAGTAGAGAAAAGATTGAAAAGA 732
|||||| |||||||| ||||||||| ||||||||||||||| ||||| |||||||||||
Sbjct 616 GTTTTCCTGTGGAGGTTCCAATATTGGATTGGTGTAGGAGTCGAGAAGCGATTGAAAAGA 675
Query 733 GGTCTAGCGGTATTCGATCAACTACTCGAGAAGATCATAACGGCTAAACGAGAGGAGATC 792
||||| ||||| ||||||||||| || ||||||||||||||| | ||| |||||||||||
Sbjct 676 GGTCTTGCGGTTTTCGATCAACTTCTTGAGAAGATCATAACGACCAAAAGAGAGGAGATC 735
Query 793 AATAGTCATGGGACTCATCATCCCTCAAGAGGAGAGGCCATAGACGTGTTGACATACTAC 852
|| |||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 736 AAAAGTCATGGGACTGATCATCACTCAAGAGGAGAGGCCATAGACGTTTTGACATACTAC 795
Query 853 ATGACTATGGACACGACCAAATATAAGTACTTGGAACCAAGTGATGATAGATTCATCAAA 912
|||||| ||||||||||||| |||||| ||||| |||| |||||||||| ||||||||||
Sbjct 796 ATGACTGTGGACACGACCAAGTATAAGAACTTGAAACCGAGTGATGATAAATTCATCAAA 855
Query 913 GACACTATTTTGGGTTTCTTGATAGCGGCAAGAGATACAACAAGTTCAGCACTCACTTGG 972
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 856 GACACTATTTTGGGTTTCTTGATAGCGGCAAGAGACACAACAAGTTCAGCTCTCACTTGG 915
Query 973 TTCTTCTGGCTTATGTCCAAGAACCCTGAGGCAATAAACAAGATCCGACAAGAGGTTAAC 1032
|||||||||||| |||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct 916 TTCTTCTGGCTTCTGTCCAAGAACCCTGAAGCAATGAACAAGATTCGACAAGAGGTTAAC 975
Query 1033 AAGAAGATGCCGAGGTTTGATCCCGCAGATTTAGAAAAGCTCGTGTATCTACACGGTGCC 1092
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 976 AAGAAGATGCCGAGGTTTAATCCCGCAGATTTAGACAAGCTCGTGTATCTACACGGTGCC 1035
Query 1093 GTGTGTGAGACGCTAAGGTTATACCCACCAGTTCCATTTAACCACAAGTCACCGGCAAAG 1152
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
Sbjct 1036 GTGTGTGAGACGCTAAGGTTATATCCACCAGTCCCATTTAACCACAAGTCACCGGCAATG 1095
Query 1153 CCAGACGTACTTCCAAGTGGGCATAGAGTAGATGAGAAATGGAAGATTGTCATATCTATG 1212
|||||||| |||||||||||||||| ||| |||||||| |||||||||||||||||||||
Sbjct 1096 CCAGACGTGCTTCCAAGTGGGCATAAAGTCGATGAGAATTGGAAGATTGTCATATCTATG 1155
Query 1213 TATGCATTAGGGAGGATGAAATCTGTTTGGGGAGATGACGCAGAAGATTTCAGACCAGA 1271
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1156 TATGCATTAGGGAGGATGAAATCTGTTTGGGGAGATGACGCGGAAGATTTCAGACCAGA 1214
Score = 405 bits (219), Expect = 5e-112
Identities = 245/258 (95%), Gaps = 0/258 (0%)
Strand=Plus/Plus
Query 1 ATGGCGATAGTCATAGGTTTACTTGAAATCTTCACAGCATTTGTTTTCTTCATTTTCTTC 60
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 ATGGCGATAGTCATAGGCTTACTTGAAATCTTCATAGCATTTGTTTTCTTCATTTTCTTC 60
Query 61 CAATGTTTATTACTCCACAAGAAAACTCCCAAGCCTTTGCTCACGAACTGGCCGGCCCTT 120
|||| |||||| |||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 61 CAATATTTATTGCTCCACAAGAAATCTCCCAAGCCTTTGCTCACGAACTGGCCGGTCCTA 120
Query 121 GGGATGCTTCCGGGTCTACTCCTCCAAGTGCCTCGTATCTACGACTGGATCACCGAGGTT 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGGATGCTTCCGGGTCTGCTCCTCCAAGTGCCTCGTATCTACGACTGGATCACCGAGGTT 180
Query 181 CTTGAGGCGACAGATATGACGTTTTGTTTCAAAGGTCCATGTCTTAGCGGAATGGACATC 240
|||||||| || |||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 181 CTTGAGGCCACCGATATGACGTTTTGTTTCAAAGGTCCATATCTTAGTGGAATGGACATC 240
Query 241 TTGCTTACTGTTGATCCG 258
||||| ||||||||||||
Sbjct 241 TTGCTCACTGTTGATCCG 258
Score = 274 bits (148), Expect = 1e-72
Identities = 160/166 (96%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 1347 AGCTTGCTTGGGGAAAAAGTTAACGTTCTTACAGATGAAGACAGTGGCTGCGGAAATCAT 1406
|||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1215 AGCTTGCTTGGGAAAAAAGTTAACGTTCTTGCAGATGAAGACCGTGGCTGCGGAAATCAT 1274
Query 1407 ACGAAACTATGACATCAAGGTCGTTGAAGGGCACAAAACCGAACCAGTTCCTTCTGTTCT 1466
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1275 ACGAAACTATGACATCAAGGTCGTTGAAGGGCACAAAACCGAACCTGTTCCTTCTGTTCT 1334
Query 1467 TTTTCGTATGCAACATGGTCTCAAAGTTAATATCACTAGGATCTAG 1512
|||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 1335 TTTTCGCATGCAACATGGTCTCAAAGTTAATATCACTAAGATCTAG 1380
> Ahg907906 jgi|Araly1|907906|Al_scaffold_0002_987
Length=1059
Score = 1031 bits (558), Expect = 0.0
Identities = 608/633 (96%), Gaps = 0/633 (0%)
Strand=Plus/Plus
Query 880 TACTTGGAACCAAGTGATGATAGATTCATCAAAGACACTATTTTGGGTTTCTTGATAGCG 939
|||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||| |
Sbjct 427 TACTTGAAACCAAGTGATGATAAATTCATTAAAGACACTATTTTGGGTTTCTTGATAGTG 486
Query 940 GCAAGAGATACAACAAGTTCAGCACTCACTTGGTTCTTCTGGCTTATGTCCAAGAACCCT 999
|||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 487 GCAAGAGACACAACAAGTTCAGCTCTCACTTGGTTCTTCTGGCTTCTGTCCAAGAACCCT 546
Query 1000 GAGGCAATAAACAAGATCCGACAAGAGGTTAACAAGAAGATGCCGAGGTTTGATCCCGCA 1059
|| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 GAAGCAATGAACAAGATTCGACAAGAGGTTAACAAGAAGATGCCGAGGTTTGATCCCGCA 606
Query 1060 GATTTAGAAAAGCTCGTGTATCTACACGGTGCCGTGTGTGAGACGCTAAGGTTATACCCA 1119
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 GATTTAGACAAGCTCGTGTATCTACACGGTGCCGTGTGTGAGACGCTAAGGTTATACCCA 666
Query 1120 CCAGTTCCATTTAACCACAAGTCACCGGCAAAGCCAGACGTACTTCCAAGTGGGCATAGA 1179
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 667 CCAGTCCCATTTAACCACAAGTCACCGGCAAAGCCAGACGTGCTTCCAAGTGGGCATAAA 726
Query 1180 GTAGATGAGAAATGGAAGATTGTCATATCTATGTATGCATTAGGGAGGATGAAATCTGTT 1239
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 GTCGATGAGAATTGGAAGATTGTCATATCTATGTATGCATTAGGGAGGATGAAATCTGTT 786
Query 1240 TGGGGAGATGACGCAGAAGATTTCAGACCAGAGAGATGGATTTCAGACAGTGGAAGGTTA 1299
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 787 TGGGGAGATGACGCGGAAGATTTCAGACCAGAGAGATGGATTTCATACAGTGGAAGGTTA 846
Query 1300 AAACATGAACCTTCATATAAGTTCTTGGCGTTTAACGCCGGTCCAAGAGCTTGCTTGGGG 1359
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 847 AAACATGAACCTTCATATAAGTTCTTGGCGTTTAACGCTGGTCCAAGAGCTTGCTTGGGA 906
Query 1360 AAAAAGTTAACGTTCTTACAGATGAAGACAGTGGCTGCGGAAATCATACGAAACTATGAC 1419
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 907 AAAAAGTTAACGTTCTTGCAGATGAAGACAGTGGCTGTGGAAATCATACGAAACTATGAC 966
Query 1420 ATCAAGGTCGTTGAAGGGCACAAAACCGAACCAGTTCCTTCTGTTCTTTTTCGTATGCAA 1479
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 967 ATCAAGGTCGTTGAAGGGCACAAAACCGAACCTGTTCCTTCTGTTCTTTTTCGCATGCAA 1026
Query 1480 CATGGTCTCAAAGTTAATATCACTAGGATCTAG 1512
||||||||||||||||||||||||| |||||||
Sbjct 1027 CATGGTCTCAAAGTTAATATCACTAAGATCTAG 1059
Score = 588 bits (318), Expect = 4e-167
Identities = 373/400 (93%), Gaps = 2/400 (1%)
Strand=Plus/Plus
Query 439 AGTACAAGTGTAAGA-AAATTAAGGCAAGGGCTTGTTCCTATTCTTGAAAACGCAGCTGA 497
||||||||||||| | |||||||||||||||||||||||||||||||| ||||| | |||
Sbjct 28 AGTACAAGTGTAA-ACAAATTAAGGCAAGGGCTTGTTCCTATTCTTGAGAACGCTGTTGA 86
Query 498 TAAAAATATCCTTGTCGACTTGCAAGATTTGTTCCAGAGATTCTTGTTTGATACATCTTT 557
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 87 TAAAAATATCCTTGTCGACTTGCAAGATGTGTTCCAGAGATTCTTGTTTGACACATCTTT 146
Query 558 GATTTTGATGACCGGGTATGATCCAAAATGTTTATCCGTTGAAATGCCTAAGGTTGAGTT 617
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 147 GATTTTGATGTCCGGGTATGATCCAAAATGTTTATCTATTGAAATGCCTAAGGTTGAGTT 206
Query 618 CGGTGACGCGGTCGATGGTGTTTCTGACGGGGTTTTCTATAGACATGTTAAGCCGGTTTT 677
||||||||| || |||||||| |||||| | ||||||||||||||||| |||||||||||
Sbjct 207 CGGTGACGCAGTAGATGGTGTCTCTGACAGAGTTTTCTATAGACATGTCAAGCCGGTTTT 266
Query 678 CTTGTGGAGGCTCCAATATTTGATTGGTGTAGGAGTAGAGAAAAGATTGAAAAGAGGTCT 737
|||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||
Sbjct 267 CTTGTGGAGGCTCCAATATTGGATTGGTGTAGGACTCGAGAAAAGATTGAAAAGAGGTCT 326
Query 738 AGCGGTATTCGATCAACTACTCGAGAAGATCATAACGGCTAAACGAGAGGAGATCAATAG 797
||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||| ||
Sbjct 327 TGCGGTTTTCGATCAACTTCTCGAGAAGATCATAACGGCTAAAAGAGAGGAGATCAAAAG 386
Query 798 TCATGGGACTCATCATCCCTCAAGAGGAGAGGCCATAGAC 837
|| ||||||||| |||| ||||||||||||||||||||||
Sbjct 387 TCTTGGGACTCAACATCACTCAAGAGGAGAGGCCATAGAC 426
> Ahg338681 jgi|Araly1|338681|fgenesh1_pg.C_scaffold_2000780
Length=771
Score = 950 bits (514), Expect = 0.0
Identities = 554/574 (97%), Gaps = 0/574 (0%)
Strand=Plus/Plus
Query 939 GGCAAGAGATACAACAAGTTCAGCACTCACTTGGTTCTTCTGGCTTATGTCCAAGAACCC 998
||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 198 GGCAAGAGACACAACAAGTTCAGCTCTCACTTGGTTCTTCTGGCTTCTGTCCAAGAACCC 257
Query 999 TGAGGCAATAAACAAGATCCGACAAGAGGTTAACAAGAAGATGCCGAGGTTTGATCCCGC 1058
||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 258 TGAAGCAATGAACAAGATTCGACAAGAGGTTAACAAGAAGATGCCGAGGTTTGATCCCGC 317
Query 1059 AGATTTAGAAAAGCTCGTGTATCTACACGGTGCCGTGTGTGAGACGCTAAGGTTATACCC 1118
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 AGATTTAGACAAGCTCGTGTATCTACACGGTGCCGTGTGTGAGACGCTAAGGTTATACCC 377
Query 1119 ACCAGTTCCATTTAACCACAAGTCACCGGCAAAGCCAGACGTACTTCCAAGTGGGCATAG 1178
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 378 ACCAGTCCCATTTAACCACAAGTCACCGGCAAAGCCAGACGTGCTTCCAAGTGGGCATAA 437
Query 1179 AGTAGATGAGAAATGGAAGATTGTCATATCTATGTATGCATTAGGGAGGATGAAATCTGT 1238
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 AGTCGATGAGAATTGGAAGATTGTCATATCTATGTATGCATTAGGGAGGATGAAATCTGT 497
Query 1239 TTGGGGAGATGACGCAGAAGATTTCAGACCAGAGAGATGGATTTCAGACAGTGGAAGGTT 1298
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 498 TTGGGGAGATGACGCGGAAGATTTCAGACCAGAGAGATGGATTTCATACAGTGGAAGGTT 557
Query 1299 AAAACATGAACCTTCATATAAGTTCTTGGCGTTTAACGCCGGTCCAAGAGCTTGCTTGGG 1358
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 558 AAAACATGAACCTTCATATAAGTTCTTGGCGTTTAACGCTGGTCCAAGAGCTTGCTTGGG 617
Query 1359 GAAAAAGTTAACGTTCTTACAGATGAAGACAGTGGCTGCGGAAATCATACGAAACTATGA 1418
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 618 AAAAAAGTTAACGTTCTTGCAGATGAAGACAGTGGCTGCGGAAATCATACGAAACTATGA 677
Query 1419 CATCAAGGTCGTTGAAGGGCACAAAACCGAACCAGTTCCTTCTGTTCTTTTTCGTATGCA 1478
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 678 CATCAAGGTCGTTGAAGGGCACAAAACCGAACCTGTTCCTTCTGTTCTTTTTCGCATGCA 737
Query 1479 ACATGGTCTCAAAGTTAATATCACTAGGATCTAG 1512
|||||||||||||||||||||||||| |||||||
Sbjct 738 ACATGGTCTCAAAGTTAATATCACTAAGATCTAG 771
Score = 281 bits (152), Expect = 8e-75
Identities = 180/194 (93%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 601 ATGCCTAAGGTTGAGTTCGGTGACGCGGTCGATGGTGTTTCTGACGGGGTTTTCTATAGA 660
|||||||||||||||||||||||||| || |||||||| |||||| | ||||||||||||
Sbjct 1 ATGCCTAAGGTTGAGTTCGGTGACGCAGTAGATGGTGTCTCTGACAGAGTTTTCTATAGA 60
Query 661 CATGTTAAGCCGGTTTTCTTGTGGAGGCTCCAATATTTGATTGGTGTAGGAGTAGAGAAA 720
||||| ||||||||||||||||||||||||||||||| ||||||||||||| | ||||||
Sbjct 61 CATGTCAAGCCGGTTTTCTTGTGGAGGCTCCAATATTGGATTGGTGTAGGACTCGAGAAA 120
Query 721 AGATTGAAAAGAGGTCTAGCGGTATTCGATCAACTACTCGAGAAGATCATAACGGCTAAA 780
||||||||||||||||| ||||| || |||||||| ||||||||||||||||||||||||
Sbjct 121 AGATTGAAAAGAGGTCTTGCGGTTTTTGATCAACTTCTCGAGAAGATCATAACGGCTAAA 180
Query 781 CGAGAGGAGATCAA 794
|||||||||||||
Sbjct 181 AGAGAGGAGATCAA 194
> Ahg925517 jgi|Araly1|925517|scaffold_201078.1
Length=671
Score = 939 bits (508), Expect = 0.0
Identities = 562/588 (96%), Gaps = 3/588 (1%)
Strand=Plus/Plus
Query 927 TTTCTTGAT--AGCGGCAAGAGATACAACAAGTTCAGCACTCACTTGGTTCTTCTGGCTT 984
||||||| | || ||||||||| |||| ||||||||| |||||||||||||||||||||
Sbjct 65 TTTCTTG-TGGAGTGGCAAGAGACACAATAAGTTCAGCTCTCACTTGGTTCTTCTGGCTT 123
Query 985 ATGTCCAAGAACCCTGAGGCAATAAACAAGATCCGACAAGAGGTTAACAAGAAGATGCCG 1044
|||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||
Sbjct 124 CTGTCCAAGAACCCTGAAGCAATGAACAAGATTCGACAAGAGGTTAACAAGAAGATGCCG 183
Query 1045 AGGTTTGATCCCGCAGATTTAGAAAAGCTCGTGTATCTACACGGTGCCGTGTGTGAGACG 1104
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 184 AGGTTTGATCCCGCAGATTTAGACAAGCTCGTGTATCTACACGGTGCCGTGTGTGAGACG 243
Query 1105 CTAAGGTTATACCCACCAGTTCCATTTAACCACAAGTCACCGGCAAAGCCAGACGTACTT 1164
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 244 CTAAGGTTATACCCACCAGTCCCATTTAACCACAAGTCACCGGCAAAGCCAGACGTGCTT 303
Query 1165 CCAAGTGGGCATAGAGTAGATGAGAAATGGAAGATTGTCATATCTATGTATGCATTAGGG 1224
||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 304 CCAAGTGGGCATAAAGTCGATGAGAATTGGAAGATTGTCATATCTATGTATGCATTAGGG 363
Query 1225 AGGATGAAATCTGTTTGGGGAGATGACGCAGAAGATTTCAGACCAGAGAGATGGATTTCA 1284
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 364 AGGATGAAATCTGTTTGGGGAGATGACGCGGAAGATTTCAGACCAGAGAGATGGATTTCA 423
Query 1285 GACAGTGGAAGGTTAAAACATGAACCTTCATATAAGTTCTTGGCGTTTAACGCCGGTCCA 1344
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 424 TACAGTGGAAGGTTAAAACAAGAACCTTCATATAAGTTCTTGGCGTTTAACGCTGGTCCA 483
Query 1345 AGAGCTTGCTTGGGGAAAAAGTTAACGTTCTTACAGATGAAGACAGTGGCTGCGGAAATC 1404
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 484 AGAGCTTGCTTGGGAAAAAAGTTAACGTTCTTGCAGATGAAGACAGTGGCTGCGGAAATC 543
Query 1405 ATACGAAACTATGACATCAAGGTCGTTGAAGGGCACAAAACCGAACCAGTTCCTTCTGTT 1464
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 544 ATACGAAACTATGACATCAAGGTCGTTGAAGGGCACAAAACCGAACCTGTTCCTTCTGTT 603
Query 1465 CTTTTTCGTATGCAACATGGTCTCAAAGTTAATATCACTAGGATCTAG 1512
|||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 604 CTTTTTCGCATGCAACATGGTCTCAAAGTTAATATCACTAAGATCTAG 651
> Ahg932132 jgi|Araly1|932132|scaffold_400120.1
Length=1574
Score = 255 bits (138), Expect = 5e-67
Identities = 424/557 (76%), Gaps = 39/557 (7%)
Strand=Plus/Plus
Query 964 CTCACTTGGTTCT-TCTGGCTTATGTCCAAGAACCCTGAGGCAATAAACAAGATCCGACA 1022
||||||||||||| | |||||| | |||||||||||||| || | | ||||||||| ||
Sbjct 978 CTCACTTGGTTCTGT-TGGCTTCTCTCCAAGAACCCTGAAGCTGTGACCAAGATCCGCCA 1036
Query 1023 AGAGGT-TA-AC-AA--GA--A-GATGCC-G-A-G-GTTT-GATCCCGCAGAT-TTAGAA 1068
|||| | | || || | | ||| || | | | |||| ||| | | | || ||| ||
Sbjct 1037 AGAGATCAACACAAATCTACCAGGAT-CCGGAATGAGTTTAGATGCAG-ACATGTTA-AA 1093
Query 1069 -AAGCTCGTGTATCTACACGGTGCCGTGTGTGAGA-CGCTAAGGTTATACCCACCAGTTC 1126
||| | |||||| |||| ||||| ||||||| | | ||| | | ||| | ||| | |
Sbjct 1094 CAAGATGGTGTATTTACATGGTGCATTGTGTGA-ATCACTACGCCTCTACGCTCCAATCC 1152
Query 1127 CATT-TAACCACAAGTCACCGGCAAAGCCAGACGTACTTCCAAGTGGGCATAGAGTAGAT 1185
|||| | | | ||| | || ||| | ||| || ||||||||||| || | ||| |||
Sbjct 1153 CATTCGAGCGA-AAGACTCCCATAAAACAAGATGTGCTTCCAAGTGGACACAAAGTCGAT 1211
Query 1186 GAGAAA-TGGAAGATTGTCATATCTATGTATGCATTAGGGAGGATGAAATCTGTTTGGGG 1244
| ||| ||||||||| | | ||| | |||||||| ||||||||||| |||| |||||
Sbjct 1212 G-CAAATTGGAAGATTTTGTTCTCTGTCTATGCATTGGGGAGGATGAAGGCTGTGTGGGG 1270
Query 1245 AGATGACGCA-GAAGATTTCAGACCAGAGAGATGGATTTC--AGA-CAGTGGAAGG-TTA 1299
||| |||||| | || |||| |||||||||||||||||| ||| | ||| ||| |||
Sbjct 1271 AGAAGACGCATG-TGAATTCAAACCAGAGAGATGGATTTCTGAGAGAAATGG-AGGCTTA 1328
Query 1300 AAACATGAACCTTCATAT-AAGTTCTTGGCGTTTAACGCCGGTCCAAGAGCTTGCTTGGG 1358
|| |||||||| || | | |||||||| | |||||| | ||||||||| |||||||||
Sbjct 1329 AAGCATGAACCATC-TTTCAAGTTCTTCGTGTTTAATTCTGGTCCAAGAAATTGCTTGGG 1387
Query 1359 GAAAAAG-TTAACGTTCTTACAGATGAAGACAGTGGCTGCGGAAATCATACGAAACTATG 1417
| ||||| ||| | ||||| |||||||||||||||||| || || |||||||| ||||
Sbjct 1388 G-AAAAGTTTATCTTTCTTGCAGATGAAGACAGTGGCTATTGAGATTATACGAAATTATG 1446
Query 1418 ACATCAAGGTCGTTGAAGGGCACAAAACCGAACCAG-TTCCTTCTGTTCTTTTTCGTATG 1476
||||||||||||||||||||||||| | ||| |||| ||| ||| | | ||| |||
Sbjct 1447 ACATCAAGGTCGTTGAAGGGCACAAGATCGAGCCAGCTTC-TTCCATAGTCCTTCACATG 1505
Query 1477 CAACATGGTCTCAAAGT 1493
||||||| ||||||||
Sbjct 1506 AAACATGGCCTCAAAGT 1522
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56602104070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5