BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65342.1
Length=336
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475592 jgi|Araly1|475592|fgenesh2_kg.2__722__AT1G65342.1 228 2e-59
> Ahg475592 jgi|Araly1|475592|fgenesh2_kg.2__722__AT1G65342.1
Length=300
Score = 228 bits (123), Expect = 2e-59
Identities = 153/167 (92%), Gaps = 3/167 (2%)
Strand=Plus/Plus
Query 1 ATGGTGAATACTTGTAGAATCAGCTTCATAAGCTTCATGATACTCTTGCTCTTCATCAAT 60
|||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||
Sbjct 1 ATGGTGAATACTTGTAGAATCAGCTTCATAAGCTCCATGATTCTCTTGCTCTTTATCAAT 60
Query 61 CAGTCATCTCTTTCTTCTTCTGTACGCATCGGTCTACAAGGAGGTCGAGATCTTATTCAC 120
||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 61 CAGTCGGCTCTTTCTTCTTCTGTACGCATCGGTCTACAAGAAGGTCGAGATCTTGTTCAC 120
Query 121 CACCGTACACTTGATGAGATTGAGAGAG---ACAAGGCACGTCTCAG 164
|| || ||||||||||||||||| |||| |||| |||||||||||
Sbjct 121 CATCGGACACTTGATGAGATTGAAAGAGCGGACAAAGCACGTCTCAG 167
Score = 102 bits (55), Expect = 1e-21
Identities = 64/68 (94%), Gaps = 2/68 (3%)
Strand=Plus/Plus
Query 258 CGAG-GCCTTTGGTTTGGTTCCTTTAGGGTTTGATACTTCGATGTATCATATAAACCCTC 316
|||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 230 CGAGAGCCTTTGATTTGGTTGCTTTAGGGTTTGATACTTCGATGTATCATATAAACCCT- 288
Query 317 tttttttA 324
||||||||
Sbjct 289 TTTTTTTA 296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11904543768
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5