BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G65346.1

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg927850 jgi|Araly1|927850|scaffold_300307.1                        350    5e-96


> Ahg927850 jgi|Araly1|927850|scaffold_300307.1
Length=283

 Score =  350 bits (189),  Expect = 5e-96
 Identities = 196/199 (98%), Gaps = 1/199 (1%)
 Strand=Plus/Plus

Query  145  ATGGAATTGAGGTTCGATGTAATTGACCTGCCTTATGTTGGACTTCCCAACTTACCTAGC  204
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  21   ATGGAATTGAGGTTCGATGTAATTGACCTGCCTTATGTTGGACTTCCCAACTTACCTAGC  80

Query  205  GGAAGAAAAGGGCTAGGACCTATAAATATAAATATGTATAGGTCACTTCCACCAACAACT  264
            |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct  81   GGAAGAAAAGGGCTAGGACCTATAAATAGAAATATGTCTAGGTCACTTCCACCAACAACT  140

Query  265  CAAGCTATTTCTTACTGGGATTCTCCACAAGTACTAGAAAGTATGGGATCTCTACAACTT  324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  141  CAAGCTATTTCTTACTGGGATTCTCCACAAGTACTAGAAAGTATGGGATCTCTACAACTT  200

Query  325  GTTCCACAAACTCAA-ACT  342
            ||||||||||||||| |||
Sbjct  201  GTTCCACAAACTCAACACT  219



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13163678205


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5