BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65352.1
Length=246
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315571 jgi|Araly1|315571|fgenesh1_pm.C_scaffold_2000604 377 2e-104
> Ahg315571 jgi|Araly1|315571|fgenesh1_pm.C_scaffold_2000604
Length=246
Score = 377 bits (204), Expect = 2e-104
Identities = 232/246 (94%), Gaps = 0/246 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAAAATAGTGTTCAGGAAAATTGTGTTTGTTGCCTTCTTATTGTCCCTTTCATGT 60
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGGAGAAAATGGTGTTCAGGAAAATTGTGTTTATTGCCTTCTTATTGTCCCTTTCATGT 60
Query 61 TTATTGGAGGGAGAAGCAAGAATGAGTGGAGATGTAACAATACAACGTGGAGGGTCTTGC 120
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 61 TTATTGGAGGGAGAAGCAAGAATTAGTGGAGATATAACAATACAACGTGGAGGGTCTTGC 120
Query 121 AACAACGACAATACCTGTCACGATACATGTCCGGGTTGCCGTATCACACAATGTATTTTC 180
|||||||||||||| ||||||||||||||||||||||| ||| | |||||||||||||||
Sbjct 121 AACAACGACAATACTTGTCACGATACATGTCCGGGTTGTCGTGTAACACAATGTATTTTC 180
Query 181 AGGCAATGTGTTTGTACTCGTTGTAACACTCCACGATCAAGTTTACGTATTGAATCTCAT 240
|| |||||||| ||| |||||||||| || ||||||||||||||||||||| ||||||||
Sbjct 181 AGCCAATGTGTCTGTTCTCGTTGTAATACCCCACGATCAAGTTTACGTATTAAATCTCAT 240
Query 241 ATGTAA 246
||||||
Sbjct 241 ATGTAA 246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8515982203
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5