BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65380.1
Length=2424
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475632 jgi|Araly1|475632|fgenesh2_kg.2__762__AT1G65380.1 3615 0.0
> Ahg475632 jgi|Araly1|475632|fgenesh2_kg.2__762__AT1G65380.1
Length=2430
Score = 3615 bits (1957), Expect = 0.0
Identities = 2276/2431 (94%), Gaps = 18/2431 (1%)
Strand=Plus/Plus
Query 1 GCTTCACTCTCCATTGC-AAAGAGAGGTCTCTGCGATTTCTGCAACTCACCCCTGAAACC 59
||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1 GCTTCACTCTCCATTGCAAAAGAGAGGTCGCTGCGATTTCTGCAATTCACCCCTGAAACC 60
Query 60 TTCTTAATTTACTTCAACTGCCGCTATACCTAAAAACTTCATCTTTCTCCTCTGAGCTAT 119
|||| ||||||||||||||||| |||||||| |||||||||||||||||| ||||||||
Sbjct 61 TTCTCAATTTACTTCAACTGCCACTATACCT--AAACTTCATCTTTCTCCTTTGAGCTAT 118
Query 120 GATAAAGATTGCAGATTTCACTCTCTTCTT-CT-TT-ATCTTCGTCTTCTCTCCCTCGTT 176
|||||||||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct 119 GATAAAGATTGCAGATTTCACTCTCTTCTTCCTCTTCTTCTTCGTCTTCTCTCCCTCGTT 178
Query 177 GCCTCTAGCTCAATCTCAGCTTCCCGATCTCGACCCACAAGACAAAGCTTCTTTATTGAT 236
|| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 179 GCTTCTAGCTCAATCTCAGCTTCCCAATATCGACCCACAAGACAAAGCTTCTTTATTGAT 238
Query 237 ATTCAGAGTTTCGATTCACGACCTAAATCGAAGCTTATCGACATGGTACGGCTCATCGTG 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 ATTCAGAGTTTCGATTCACGACCTAAATCGAAGCTTATCGACATGGTACGGCTCATCGTG 298
Query 297 TTCTAACTGGACAGGTCTAGCTTGTCAGAATCCGACCGGAAAAGTTCTCTCCCTCACTTT 356
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 299 TTCTAACTGGACAGGTCTAGCTTGTCAGAATCCGACCGGAAAAGTTCTCTCTCTCACTTT 358
Query 357 ATCCGGTCTGAATCTCTCCAGTCAGATTCACCCATCTCTTTGTAAGCTCTCTTCTCTTCA 416
||| ||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||
Sbjct 359 ATCTGGTCTGAATCTCTCCGGGCAGATTCACCCATCTCTTTGTGAGCTCTCTTCTCTTCA 418
Query 417 AAGCTTGGACCTTTCTCACAACAACTTCTCTGGAAACATTCCTTCTTGCTTCGGTTCGTT 476
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 419 AAGCTTGGACCTTTCTCACAACAATTTCTCTGCAAACATTCCTTCTTGCTTCGGTTCGTT 478
Query 477 GCGTAATCTTAGGACACTTAATCTTAGTCGGAATAGATTCGTTGGTTCGATACCCGCCAC 536
|||||||||||||||||||||||||||||| ||||| || |||||||||| || ||| |
Sbjct 479 GCGTAATCTTAGGACACTTAATCTTAGTCGTAATAGTTTTTTTGGTTCGATTCCTGCCTC 538
Query 537 ATTTGTAAGTCTTAAGGAGCTTAGAGAAGTTGTTCTAAGTGAGAATAGAGATTTAGGCGG 596
|||| | ||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 539 ATTTCTGAGTCTTAAGGAGCTTAGAGAAGTTGTTCTAAGTGAGAATAGAGATTTGGGTGG 598
Query 597 TGTGGTCCCTCATTGGTTTGGTAATTTCTCAATGAATCTTGAGAGAGTTGATTTTAGTTT 656
|||| | |||||||||||||| |||||| |||| ||||||||| |||||||| |||||
Sbjct 599 TGTGATTCCTCATTGGTTTGGGGGTTTCTCGATGATTCTTGAGAGTGTTGATTTAAGTTT 658
Query 657 CTGCTCGTTTGTTGGAGAACTACCTGAGAGTTTACTGTATTTGAAGTCTCTCAAGTACTT 716
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CTGCTCGTTTCTTGGAGAATTACCTGAGAGTTTACTGTATTTGAAGTCTCTCAAGTACTT 718
Query 717 GAATCTTGAGAGCAATAACATGACTGGTACACTCAGAGATTTTCAGCAGCCATTGGTGGT 776
|||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 719 GAATCTCGAGAGCAATAACTTGACTGGTACACTTAGAGATTTTCAGCAGCCATTGGTGGT 778
Query 777 TCTTAATCTTGCTTCAAATCAGTTTTCCGGTACGCTACCTTGTTTCTACGCCTCTCGTCC 836
||||||||||||| |||||| |||| | ||||| || |||||||||||||||||||||||
Sbjct 779 TCTTAATCTTGCTGCAAATCGGTTTACGGGTACACTGCCTTGTTTCTACGCCTCTCGTCC 838
Query 837 GTCTCTTAGTATTCTGAATATAGCTGAGAACTCTCTGGTTGGTGGATTACCTTCTTGTTT 896
||||| ||| |||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 839 TTCTCTCAGTGTTCTGAATCTAGCTGAGAACTCTTTGGTTGGTGGATTACCTTCTTGTTT 898
Query 897 GGGTTCTTTAAAAGAGCTGAGTCATTTGAATCTATCTTTCAATGGCTTCAACTACGAGAT 956
||||||||||||||||||||||||||| ||||| || |||||||| || |||||||||||
Sbjct 899 GGGTTCTTTAAAAGAGCTGAGTCATTTAAATCTGTCCTTCAATGGATTTAACTACGAGAT 958
Query 957 ATCTCCTAGGCTTATGTTTTCAGAGAAGCTTGTGATGTTGGACTTGAGTCACAACGGGTT 1016
|||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 959 ATCTCCGAGGCTTATGTTTTCGGAGAAGCTTGTGATGCTGGACTTGAGTCACAACGGGTT 1018
Query 1017 TTCAGGTCGTCTTCCTAGTAGAATCTCGGAAACAACTGAGAAATTGGGTTTGGTTCTTCT 1076
|||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||
Sbjct 1019 TTCAGGTCGTCTTCCTAGTAGAATATCGGAAACAACTGAGAAACTGGGTTTAGTTCTTCT 1078
Query 1077 TGACCTCTCTCACAATAGCTTTTCTGGTGATATACCGTTGAGGATCACAGAGTTGAAGAG 1136
|||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||
Sbjct 1079 TGACCTCTCTCACAATAGGTTTTCTGGTGATATACCGTTGAGGATTACCGAGTTGAAGAG 1138
Query 1137 TTTACAAGCATTGCGTCTCTCTCACAATCTTTTAACTGGAGATATTCCTGCTAGAATTGG 1196
|||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 1139 TTTACAAGCATTGCGTCTCTCTCACAATCTTTTAACGGGAGATATCCCGGCTAGAATTGG 1198
Query 1197 TAATCTGACATATCTCCAGGTCATTGATCTTTCCCACAACGCGTTAACCGGCTCAATACC 1256
|||||||||||||||||||| |||||||||||||| ||| | |||||||||||||||||
Sbjct 1199 GAATCTGACATATCTCCAGGTTATTGATCTTTCCCATAACTCATTAACCGGCTCAATACC 1258
Query 1257 TCTCAACATTGTTGGTTGCTTTCAGTTACTTGCTCTGATGATAAGTAACAACAATCTCTC 1316
||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct 1259 TCTCAACATTGTTGGTTGCTTTCAGTTGCTTGCTCTGATGATTAGTAATAACAATCTCTC 1318
Query 1317 TGGCGAAATACAACCCGAGCTTGATGCGTTGGATAGTCTAAAGATACTGGACATAAGCAA 1376
|||||||||||||||||||||||||||||||| ||| | |||||||||||||||||| |
Sbjct 1319 GGGCGAAATACAACCCGAGCTTGATGCGTTGGACAGTTTGAAGATACTGGACATAAGCCA 1378
Query 1377 CAACCATATATCCGGTGAGATCCCGCTTACTTTAGCTGGTC-TGAAGTCTCTAGAGATTG 1435
|||||| || || |||||||| ||||||||||| ||||| | ||||||||||||||||||
Sbjct 1379 CAACCAGATTTCGGGTGAGATACCGCTTACTTTGGCTGG-CATGAAGTCTCTAGAGATTG 1437
Query 1436 TGGATATAAGTTCCAACAACCTCTCGGGGAACCTTAATGAAGCCATTACCAAATGGTCCA 1495
||||||| |||||||| |||||||| || ||||| |||||||||||||||||||||||||
Sbjct 1438 TGGATATCAGTTCCAATAACCTCTCAGGAAACCTGAATGAAGCCATTACCAAATGGTCCA 1497
Query 1496 ACCTCAAGTATCTTTCTCTTGCCCGGAACAAGTTTAGTGGAACACTTCCTTCTTGGTTGT 1555
||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1498 ACCTCAAATATCTCTCTCTTGCCCGGAACAAATTTAGTGGAACACTTCCTTCTTGGTTGT 1557
Query 1556 TCAAGTTTGACAAAATCCAAATGATTGACTACTCCAGCAACAGATTCTCTTGGTTCATAC 1615
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1558 TCAAGTTCGACAAAATCCAAATGATCGACTACTCCAGCAACAGATTCTCTTGGTTCATAC 1617
Query 1616 CAGACGATAACTTAAACAGCACACGCTTCAAAGATTTTCAGACCGGTGGAGGTGAAGGAT 1675
||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||
Sbjct 1618 CAGACGATAACTTAAACAGCACACGTTTCAAAGATTTTCAGACCGGTGGAGATGAAAGAT 1677
Query 1676 TTGCTGAGCCACCAGGAAAAGTAGAGATCAAAATATCAGCAGCTGTTGTTGCTAAAGATG 1735
|||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1678 TTGCAGAGCAACCAGGAAAAGTAGAGATCAAAATATCAGCAGCTGTGGTTGCTAAAGACG 1737
Query 1736 AATTAAGTTTCAGCTACAATCTATTGTCTATGGTTGGGATCGATCTTTCTGACAATCTAT 1795
|| |||| ||||||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 1738 AACTAAGCTTCAGCTACAATCTATTATCCATGGTTGGGATTGATCTTTCTGACAATCTAT 1797
Query 1796 TACATGGAGAGATCCCAGAAGCTTTGTTCAGACAGAAGAATATTGAGTACTTGAACTTGT 1855
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1798 TACACGGAGAGATCCCAGAAGCTTTGTTCAGACAGAAGAATATCGAGTACTTGAACTTAT 1857
Query 1856 CCTACAACTTCCTTGAAGGTCAGCTTCCACGTCTAGAGAAGCTGCCAAGGTTAAAGGCCT 1915
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1858 CCTACAACTTCCTTGAAGGTCAGCTTCCACGTCTAGAGAAGCTGCCAAGATTAAAGGCTT 1917
Query 1916 TAGATCTTTCACACAACTCTCTGTCAGGTCAAGTCATTGGAAACATCTCAGCTCCTCCAG 1975
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1918 TAGATCTTTCACACAACTCTCTGTCAGGTCAAGTCACTGGAAACATCTCGGCTCCTCCAG 1977
Query 1976 GACTAACCCTACTGAACCTATCGCACAACTGTTTCTCTGGTATCATTACCGAGAAAGAAG 2035
|||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1978 GACTGACCCTACTGAATCTATCTCACAACTGTTTCTCTGGAATCATTACCGAGAAAGAAG 2037
Query 2036 GGCTCGGGAAGTTTCCAGGGGCGTTGGCCGGAAATCCGGAACTGTGTGTGGAAACTCCCG 2095
||||||| ||||||||||| || ||||| |||||||||||||||||||||||| |||| |
Sbjct 2038 GGCTCGGAAAGTTTCCAGGCGCTTTGGCTGGAAATCCGGAACTGTGTGTGGAATCTCCTG 2097
Query 2096 GAAGCAAGTGTGACCCGGCAAACATTGATGCATCACAAGAGGAAATATATCAAAACGAAT 2155
|||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 2098 GAAGCAAGTGTGACCCGGCAAATATTGATGCGTCACATGAGGAAATATATCAAAACGAAT 2157
Query 2156 TGGTGGAAGGACCGATATCTATTTGGATATTCTGCTTAAGTGCGTTTATTAGCTTCGATT 2215
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 2158 TGGTGGAAGGACCGATATCGATTTGGATATTCTGCTTAAGCGCGTTTATTAGCTTCGATT 2217
Query 2216 TTGGAGTGTTAGGTATCTTTTGCTCAGCTCGTGCTCGTAGTTATATTCTTCAGACCAAAG 2275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2218 TTGGAGTGTTAGGTATCTTTTGCTCAGCTCGTGCTCGTAGTTATATTCTTCAGACCAAAG 2277
Query 2276 CTTAACTCCAGAGACTGATTGATGTATATTCAGTTGTAACACATGCATGTATGTTGTTGG 2335
|||||||||| ||| |||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 2278 CTTAACTCCAAAGATTGATTGATGTATATTCAGTTGTAACACACGCA-GTATGTTGTTGG 2336
Query 2336 TCTGAGCTGTGAAGTGGAAATGCTCGCTTTTAACTAAA--GTC--T-----CTCCCAAAT 2386
|||||| ||||||||||||||||||||||||||||||| || | ||||||||
Sbjct 2337 TCTGAGATGTGAAGTGGAAATGCTCGCTTTTAACTAAAATGTTGGTTTTATCTCCCAAAC 2396
Query 2387 GTTGTTACTTGTGTATATAGTTTGACCGGTT 2417
|||||||||||||||||||||||||||||||
Sbjct 2397 GTTGTTACTTGTGTATATAGTTTGACCGGTT 2427
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91340407510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5