BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65390.1
Length=1389
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475633 jgi|Araly1|475633|fgenesh2_kg.2__763__AT1G65390.1 1812 0.0
Ahg915660 jgi|Araly1|915660|Al_scaffold_0008_411 302 6e-81
Ahg948552 jgi|Araly1|948552|scaffold_800439.1 95.3 1e-18
> Ahg475633 jgi|Araly1|475633|fgenesh2_kg.2__763__AT1G65390.1
Length=1329
Score = 1812 bits (981), Expect = 0.0
Identities = 1222/1338 (91%), Gaps = 18/1338 (1%)
Strand=Plus/Plus
Query 3 TCCCAACCAAGA-AGATAAACACCTTAGCAAATTCAAAGAAGAATATATCAAACAT-CTT 60
|||||||||| | |||||||||| || |||||||||| |||||| |||||||| | |||
Sbjct 1 TCCCAACCAA-ACAGATAAACACATTTTCAAATTCAAACAAGAATCTATCAAAC-TCCTT 58
Query 61 TTGTTTCTAAGAAATAAGCTCTCTGATTATGTCGGGAGCATCTTCTGTTTCTTCTATTTG 120
|||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 59 TTGTGTCTAAGAAAAAAGCTCTCTGATAATGTCGGGAGCATCTTCTGTTTCTTCTATTTG 118
Query 121 TTCCTCTAATGTATCATTGATCCCTACGGGACCTCAAGTGTTCATCAATTTCCGGGGGAA 180
||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 119 TTCTTCTAATGTATCATTGATCCCTACGGGACCTCAAGTGTTCATCAATTTCCGAGGAAA 178
Query 181 AGATTTACGAAAAGGCTTCATGAGCTTTCTTAAGCCTGCTTTGAAAAAAGAAAAGATCAA 240
||||||||||||||| ||| | ||||||||| ||||||||| |||||||||||||||||
Sbjct 179 AGATTTACGAAAAGGTTTCCTCAGCTTTCTTTCGCCTGCTTTAAAAAAAGAAAAGATCAA 238
Query 241 CGTGTTTATTGACGAACAAGAGGAGAGGGGCAAATACCTAATCAGTCTTTTTGATACGAT 300
||||||||| ||||| |||||||| ||||||||||||||||||||||| ||| |||||||
Sbjct 239 CGTGTTTATAGACGAGCAAGAGGAAAGGGGCAAATACCTAATCAGTCTGTTTAATACGAT 298
Query 301 AGGTGAGTCGAAAATCGCTTTGGTTATCTTTTCTGAAGGATACTGCGAGTCACATTGGTG 360
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 299 AGGGGAGTCGAAAATCGCTTTGGTTATCTTTTCTGAGGGATACTGCGAGTCACATTGGTG 358
Query 361 TATGGACGAGCTGGTGAA-AATCAAGGAATACATGGATCAAAACAGACTCATAATCATTC 419
||||||||||||||| || ||||||||||||||||||| |||||||||||| ||||||||
Sbjct 359 TATGGACGAGCTGGT-AACAATCAAGGAATACATGGATAAAAACAGACTCAAAATCATTC 417
Query 420 CAATATTCTACAGGCTTGATCTCGATGTGGTAAAAGATCTTACAGGAAAATTTGGCGATA 479
|||||||||| |||||||| ||||| ||||| |||||||||||||| ||||| ||| |||
Sbjct 418 CAATATTCTATAGGCTTGAGCTCGACGTGGTGAAAGATCTTACAGGTAAATTCGGCAATA 477
Query 480 ATTTTTGGGATTTGGTAGATAAATATCAACCTGAACCA-AAAAAGCTCCATAAATGGACG 538
|||| ||| || |||||||||||||||||||||||||| | ||| ||||| |||||||||
Sbjct 478 ATTTCTGGAATATGGTAGATAAATATCAACCTGAACCAGAGAAA-CTCCACAAATGGACG 536
Query 539 GAAGCTTTGTTCTCTGTTTGCGAATTGTTTTCCTTGATCTTACCAAAACACAGTGACATT 598
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
Sbjct 537 GAAGCTTTGTTCTCTGTTTGCCAATTGTTTGCCTTGATCTTACCAAAACACAGTGACACT 596
Query 599 TCGGATAGAGATTTTGTAAA-GTCAATCGTCAAGGCTGTTAAAAAAGTGCAGAAGAATTT 657
|| ||||||||||| ||||| || |||||||||||| ||||||||||||||| ||||||
Sbjct 597 TCCGATAGAGATTTCGTAAAGGT-AATCGTCAAGGCGGTTAAAAAAGTGCAGCGGAATTT 655
Query 658 CTTCCAACGAAGAAATGGAGAAATAGAATATCAAGATTTC-TCAGTCCCTGCATGTAAAC 716
|| |||| |||||||||||||||||| | |||||| |||| | | ||||| || ||||||
Sbjct 656 CTCCCAAGGAAGAAATGGAGAAATAGGAGATCAAGGTTTCTTGA-TCCCTACAAGTAAAC 714
Query 717 TCACTATCACTATGCACGAGTCACCAAATGAGGAAGCCGTTCAAGTTACGGTGCTAAATG 776
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 715 TCACTATCACTATGCACGAGTCACCAAATGAGGAAGCTGTTCAAGTTTCGGTGCTAAATG 774
Query 777 AATTTTACCAGATGAAGAATCAGTCACCAGTGCCCTCATACGAGTTC--AAATTTTGGGT 834
||||||||||||||| |||||||||||||| ||| ||| ||||| || ||| ||| | |
Sbjct 775 AATTTTACCAGATGAGGAATCAGTCACCAGGGCCATCACACGAGGTCATAAAATTT-GCT 833
Query 835 CGACCTTACGAGACCAAAGGGTAACGTTTTCATGATTGACGCAAGAGATCTTTCCATTGC 894
| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 834 -GTCCTTACGAGACCGAAGGGTAACGTTTTCATGATTGACGCAAGGGATCTTTCCATTGA 892
Query 895 ATGGTCAGAGGACTCCAACCATTGGACCTGGCTCCCTCTCCCAAACCAAAATTCAAATGA 954
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 893 ATGGTCAGAGAACTCCAACCATTGGACCTGGCTCCCTCTCCCAAACCAAAAATCAAATGA 952
Query 955 ATCAGT-GATGGAAATTGCATTTTTGAAAAGTGCTAGCTGGCTAGACGTAGCTGGAAAGT 1013
||| || | |||||||||| ||||||||||| || |||||||||||| ||||||||||||
Sbjct 953 ATCGGTCG-TGGAAATTGCGTTTTTGAAAAGAGCAAGCTGGCTAGACATAGCTGGAAAGT 1011
Query 1014 TTGACACTCGATATTTGACCCCGAGGACAAGGTACGAGGTGGTGTTCGTAGTGAAGTTAG 1073
||||||| ||||||||| |||||||||||||||| ||||||||||| || |||||||| |
Sbjct 1012 TTGACACACGATATTTGTCCCCGAGGACAAGGTATGAGGTGGTGTTTGTGGTGAAGTTGG 1071
Query 1074 AATACACATTCGAATGGGAGACACTAGTGAAGCTAAAGCTAGACTTGCCGAATACTTGGG 1133
|||||||||||||||||||||||| ||||||| ||||||| |||||||| ||||||||||
Sbjct 1072 AATACACATTCGAATGGGAGACACCAGTGAAGTTAAAGCTGGACTTGCCCAATACTTGGG 1131
Query 1134 AGAAACCGCAAGAACAGAGTGTGGACATGTTTGACTACATAAGTGACCAATGGCTCGATA 1193
|||||||||||||||| |||||||||||||| || || |||||| ||||||||||||| |
Sbjct 1132 AGAAACCGCAAGAACAAAGTGTGGACATGTTCGATTATATAAGTAACCAATGGCTCGAAA 1191
Query 1194 TTCCAGTTGGAGAGTTCACCACATCGAAGAAAAACGTCGGGGAAATCTCTTTTGCAATGT 1253
|| | ||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1192 TTTCGGTTGGGGAGTTCACCACATCGATGAAAAACGTTGGGGAAATCTCTTTTGCAATGT 1251
Query 1254 ACGAACACGAGTGCCAACTGTGGAAGTCAGGCCTCTTCGTCAAAGGTGTTACAATTCGTC 1313
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1252 ACGAACACGAGTGCCAACTGTGGAAGTCAGGGCTCTTCGTCAAAGGTGTTACAATTCGTC 1311
Query 1314 CCAAATACTAAGTCATTT 1331
|||||| |||||| ||||
Sbjct 1312 CCAAATTCTAAGTTATTT 1329
> Ahg915660 jgi|Araly1|915660|Al_scaffold_0008_411
Length=1149
Score = 302 bits (163), Expect = 6e-81
Identities = 313/383 (82%), Gaps = 19/383 (5%)
Strand=Plus/Plus
Query 953 GAATCAG-TGATGGAAATTGCATTTTTGA-AAAGTGCTAGCTGGCTAGACGTAGCTGGAA 1010
||||||| | |||||||||| | ||||| ||| || |||||||||||||||| ||||
Sbjct 775 GAATCAGCCG-TGGAAATTGCGTATTTGAGAAA-AGCAAGCTGGCTAGACGTAGAAGGAA 832
Query 1011 AGTTTGACACTCGATATTTGACCCCGAGGACAAGGTACGAGGTGGTGTTCGTAGTGAAGT 1070
|||||||||| |||||| || ||||||| |||||||||||||| ||||| || ||| ||
Sbjct 833 AGTTTGACACACGATATCTGTCCCCGAGTACAAGGTACGAGGTAGTGTTAGTGGTGTTGT 892
Query 1071 TAG-AATACA-C--ATTCGAATGGGAGACACTAGTGAAGCTAAAGCTAGACTTGCCGAAT 1126
| | |||||| | |||| ||||| ||| || ||||||||| ||||| ||||| | |
Sbjct 893 T-GCAATACACCAAATTCAAATGGAAGAAACCAGTGAAGCTGAAGCTGGACTTACTTTGT 951
Query 1127 ACT-TGGGAGAAACCGCAAGAACAGAG-TGT-GGA-CAT-GTTTGACTACATAAGTGACC 1181
| | | ||| ||||||||| || | ||| || ||| | | | |||||| | | |
Sbjct 952 AGTAT-AGAGCAACCGCAAG---AGTGTTGTATGAGCATGGCAGGTC-ACATAACTAATC 1006
Query 1182 AATGGCTCGATATTCCAGTTGGAGAGTTCACCACATCGAAGAAAAACGTCGGGGAAATCT 1241
||||| | |||||||||||||| ||||||||||||||| || |||| ||||||||||||
Sbjct 1007 AATGGATTGATATTCCAGTTGGCGAGTTCACCACATCGGTGACAAACATCGGGGAAATCT 1066
Query 1242 CTTTTGCAATGTACGAACACGAGTGCCAACTGTGGAAGTCAGGCCTCTTCGTCAAAGGTG 1301
||||||| ||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1067 CTTTTGCGATGTATGAACATGAGTGCCAACTGTGGAAGTCAGGGCTCTTTGTCAAAGGTG 1126
Query 1302 TTACAATTCGTCCCAAATACTAA 1324
|||||||||||||||||||||||
Sbjct 1127 TTACAATTCGTCCCAAATACTAA 1149
> Ahg948552 jgi|Araly1|948552|scaffold_800439.1
Length=535
Score = 95.3 bits (51), Expect = 1e-18
Identities = 69/78 (88%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 142 CCCTACGGGACCTCAAGTGTTCATCAATTTCCGGGGGAAAGATTTACGAAAAGGCTTCAT 201
||| ||||||||||||||||||||||||||||| || |||||| | || || ||||||||
Sbjct 53 CCCAACGGGACCTCAAGTGTTCATCAATTTCCGTGGAAAAGATGTGCGCAACGGCTTCAT 112
Query 202 GAGCTTTCTTAAGCCTGC 219
||||||||| |||||||
Sbjct 113 TAGCTTTCTTGAGCCTGC 130
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51917003935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5