BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65410.1
Length=1494
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475635 jgi|Araly1|475635|fgenesh2_kg.2__765__AT1G65410.1 1657 0.0
> Ahg475635 jgi|Araly1|475635|fgenesh2_kg.2__765__AT1G65410.1
Length=1236
Score = 1657 bits (897), Expect = 0.0
Identities = 962/994 (97%), Gaps = 2/994 (0%)
Strand=Plus/Plus
Query 258 GTTCTTCTTCTGTTCAGTCCATCGTTGTACCAAGAAGGAGTCTTATCTCGTTTCGTCGGA 317
|||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 44 GTTCTTCTTCTGGTCCGTCCATCGTTGTACCAAGAAGGAGTTTTATCTCGTTTCGTCGGA 103
Query 318 AAGTCTCTTGCTGTTGCATAGCTCCACCTCAGAACTTGGACAACGATGCCACCAAATTCG 377
||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 104 AAGTCTCTTGCTGTTCCATAGCCCCACCTCAGAACCTGGACAACGATGCCACCAAATTCG 163
Query 378 ATAGTCTTACCAAGTCTGGAGGAGGTATGTGTAAAGAGCGAGGGCTTGAGAATGATTCTG 437
||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||
Sbjct 164 ATAGTCTTACCAAGTCTGGAGGAGGTATGCGTAAACAGCGAGAGCTTGAGAATGATTCTG 223
Query 438 ATGTTCTTATTGAATGTAGAGATGTCTATAAATCGTTTGGGGAGAAACATATCTTGAAAG 497
|||||||||| |||||| |||||||||| |||||||||||||| ||||||||||||||||
Sbjct 224 ATGTTCTTATAGAATGTCGAGATGTCTACAAATCGTTTGGGGACAAACATATCTTGAAAG 283
Query 498 GTGTTAGCTTTAAGATTAGACATGGTGAAGCTGTTGGGGTGATTGGTCCTTCTGGAACTG 557
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 284 GTGTTAGCTTTAAGATTAGACATGGTGAAGCTGTTGGGGTGATCGGTCCTTCTGGGACTG 343
Query 558 GAAAATCAACAATTTTAAAGATTATGGCTGGTCTTCTTGCTCCAGACAAGGGAGAAGTTT 617
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 344 GAAAATCAACCATTTTAAAGATCATGGCTGGTCTTCTTGCTCCAGACAAGGGAGAAGTTT 403
Query 618 ATATACGAGGaaaaaaaCGAGCTGGTTTGATAAGTGATGAGGAAATATCAGGACTTCGTA 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 ATATACGAGGAAAAAAACGAGCTGGTTTGATAAGTGATGAGGAAATATCAGGACTTCGTA 463
Query 678 TTGGCCTGGTATTTCAGAGTGCAGCTCTCTTTGATTCACTATCAGTTCGTGAAAATGTTG 737
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 464 TTGGCCTGGTATTTCAGAGTGCAGCTCTCTTTGATTCTCTATCAGTTCGTGAAAATGTTG 523
Query 738 GTTTTCTACTTTATGAAAGATCAAAAATGTCCGAGAATCAAATATCTGAGCTTGTGACAC 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 GTTTTCTACTTTATGAAAGATCAAAAATGTCCGAGAATCAAATATCTGAGCTTGTGACAC 583
Query 798 AAACCTTGGCAGCTGTTGGTTTGAAGGGGGTTGAGAATCGATTACCTTCTGAGCTATCTG 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 AAACCTTGGCAGCTGTTGGTTTGAAGGGGGTTGAGAATCGATTACCTTCTGAGCTATCTG 643
Query 858 GTGGAATGAAGAAAAGGGTTGCTTTAGCTCGTTCACTAATTTTTGATACAACAAAAGAGG 917
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 644 GTGGAATGAAGAAAAGGGTTGCTTTAGCTCGTTCACTAATTTTTGATACAACGAAAGAGG 703
Query 918 TCATAGAGCCAGAGGTGCTTTTGTACGATGAGCCAACTGCTGGACTTGATCCAATTGCAT 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 TCATAGAGCCAGAGGTGCTTTTGTACGATGAGCCAACTGCTGGACTTGATCCAATTGCAT 763
Query 978 CAACTGTAGTTGAAGATCTTATACGGTCTGTTCACATGACAGACGAAGATGCAGTTGGAA 1037
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 764 CAACTGTAGTTGAAGATCTTATACGGTCTGTTCACATGACGGACGATGATGCAGTTGGAA 823
Query 1038 AACCTGGAAAAATTGCGTCTTATCTTGTTGTTACCCATCAACATAGCACCATTCAAAGAG 1097
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 824 AACCTGGAAAAATTGCCTCTTATCTGGTTGTTACCCATCAACATAGCACCATTCAAAGAG 883
Query 1098 CTGTAGACAGGTTATTGTTTCTGTATGAAGGAAAGATCGTTTGGCAAGGAATGACACATG 1157
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 884 CTGTGGACAGGTTATTGTTTCTGTACGAAGGAAAGATCGTTTGGCAAGGAATGACACATG 943
Query 1158 AATTCACAACCTCAACTAATCCAATAGTTCAACAGTTTGCTACAGGCAGCCTCGATGGAC 1217
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 AATTTACAACCTCAACAAATCCAATAGTTCAACAGTTTGCTACAGGCAGCCTCGATGGAC 1003
Query 1218 CAATCAGATACTAGGGGAGGCAAAC-CGAGCCTA 1250
|||||||||||||| ||||| || | | ||||||
Sbjct 1004 CAATCAGATACTAGCGGAGGGAA-CGCAAGCCTA 1036
Score = 207 bits (112), Expect = 1e-52
Identities = 145/160 (91%), Gaps = 5/160 (3%)
Strand=Plus/Plus
Query 1334 GATGCTACTTGTAAACACTATTTTATCTTAGATGCATAGATCAGAAAAGCATTGTAAGTT 1393
||| ||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||
Sbjct 1082 GATTCTACTTGTAAACACTCTTTGATCTTAGATGCATAGATCAGGAAAGCATTGTAAGTT 1141
Query 1394 GAGATTTCATTATGCATCAATGAGAATCTGGTTTAATGTGCCAAGAACAAGACCTGCATT 1453
||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1142 GAGATATCATTACGCATCAATGAGAA---GGTTTAATGTGCCAAGAACAAGACCTGCATT 1198
Query 1454 CTCAAACATATACCCCAACAAAAATGAAACTTTTAATTGA 1493
|||| || ||| || ||||||| ||||||||||||||||
Sbjct 1199 CTCAGACGTATTCC--AACAAAACTGAAACTTTTAATTGA 1236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55916479660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5