BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G65420.1 Length=979 Score E Sequences producing significant alignments: (Bits) Value Ahg925606 jgi|Araly1|925606|scaffold_201167.1 987 0.0 Ahg475635 jgi|Araly1|475635|fgenesh2_kg.2__765__AT1G65410.1 147 2e-34 > Ahg925606 jgi|Araly1|925606|scaffold_201167.1 Length=637 Score = 987 bits (534), Expect = 0.0 Identities = 605/639 (95%), Gaps = 5/639 (1%) Strand=Plus/Plus Query 177 AAAACTCGAGACTGGTTCTAATGGCTTGTCAAATTCAAGCTTCACGCGTTTTCCCAGTTC 236 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1 AAAACTCGAGCCTGGTTCTAATGGCTTGTCAAATTCAAGCTTCACGCGTTTTCCCAATTC 60 Query 237 TAGAAATTGAAAAAGGTCTCTCCTTTATGATAAATGTCTTCCATAGGAGAATAAAAGCTT 296 | ||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||| Sbjct 61 TGGAAATTGAAAAAGGTCTCTCCTTTATGATTAATGTCTTCCATAGGAGAAGAAGAGCTT 120 Query 297 CGTCCATTACTCTCACTTCATTTCCTTATCCCATGAAAAGTTTTCAGATAAGAAGACCAA 356 |||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||| Sbjct 121 CGTCCATTACTCTCACTTCATTCCCTTATCCAATGAAAAGTTTTCAGCTAAGAAGACCAA 180 Query 357 ACCGGAAAATAGCGTTTGCGTTAGACACTGGTTCTTCTATTCCTGGAGATAGTGGT-GA- 414 ||||||||||||||||||| |||||||| |||||||||||||||||||||| |||| || Sbjct 181 ACCGGAAAATAGCGTTTGCTTTAGACACAGGTTCTTCTATTCCTGGAGATAATGGTGGAG 240 Query 415 -AGGGCAAGAGATGAATGGAGACAGAACCGGTCTCGGTAGCACTCGGTTAGGTAGAATTG 473 ||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 241 GAGGACAAGAGATGAATGGAGACAGAACCGGTCTCGGTAGCACTCGGTTGGGTCGAATTG 300 Query 474 CGATTGCAGGAGGCAAACAGTTACTTGGGAAGATAAACTCTGCAAGAAAAAACTTCCCAA 533 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CGGTTGCAGGAGGCAAACAGTTACTTGGGAAGATAAACTCTGCAAGAAAAAACTTCCCAA 360 Query 534 TGAAGATATTTCTGCTGCTTCTTGGTTTCTACACTGCCAATGCACTAGCTACTATTCTTG 593 ||||||||||||||||||||||||||||||| || ||||||||| | ||||| ||||||| Sbjct 361 TGAAGATATTTCTGCTGCTTCTTGGTTTCTATACCGCCAATGCATTGGCTACCATTCTTG 420 Query 594 GACAGACTGGTGATTGGGATGTGCTTGTTGCCGGAATCGTCGTTGCTGCGATCGAAGGAA 653 ||||||||||||||||||||||||||||||| ||||| ||||| |||||||| ||||||| Sbjct 421 GACAGACTGGTGATTGGGATGTGCTTGTTGCGGGAATTGTCGTGGCTGCGATTGAAGGAA 480 Query 654 TCGGTATGCTTATGTATAAGAAACCGTCTTCTTCAATGTTTTCAGGGAAGTTGCAGTCTT 713 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 481 TCGGTATGCTTATGTATAAGAAACCGTCGTCTTCAATGTTTTCAGGGAAGTTGCAGTCTT 540 Query 714 TTGTTGTGTTTATGAATTTTTGGAAAGCTGGTGTTTGCTTAGGTCTCTTTGTTGATGCTT 773 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 541 TTGTTGTGTTTATGAATTTTTGGAAAGCTGGTGTTTGCTTAGGTCTCTTTGTTGACGCTT 600 Query 774 TCAAGTTGGGTAGTTAAAAAGACAAATCTTTCTTTTCTT 812 ||||||| |||||||||| | | |||||||||||||||| Sbjct 601 TCAAGTTAGGTAGTTAAAGA-A-AAATCTTTCTTTTCTT 637 > Ahg475635 jgi|Araly1|475635|fgenesh2_kg.2__765__AT1G65410.1 Length=1236 Score = 147 bits (79), Expect = 2e-34 Identities = 104/115 (90%), Gaps = 5/115 (4%) Strand=Plus/Minus Query 865 TCAATTAAAAGTTTCATTTTTGTTGGGGTATATGTTTGAGAATGCAGGTCTTGTTCTTGG 924 |||||||||||||||| ||||||| || ||| || |||||||||||||||||||||||| Sbjct 1236 TCAATTAAAAGTTTCAGTTTTGTT--GGAATACGTCTGAGAATGCAGGTCTTGTTCTTGG 1179 Query 925 CACATTAAACCAGATTCTCATTGATGCATAATGAAATCTCAACTTACAATGCTTT 979 ||||||||||| ||||||||||||| |||||| |||||||||||||||||||| Sbjct 1178 CACATTAAACC---TTCTCATTGATGCGTAATGATATCTCAACTTACAATGCTTT 1127 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36369262818 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5