BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65420.1
Length=979
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925606 jgi|Araly1|925606|scaffold_201167.1 987 0.0
Ahg475635 jgi|Araly1|475635|fgenesh2_kg.2__765__AT1G65410.1 147 2e-34
> Ahg925606 jgi|Araly1|925606|scaffold_201167.1
Length=637
Score = 987 bits (534), Expect = 0.0
Identities = 605/639 (95%), Gaps = 5/639 (1%)
Strand=Plus/Plus
Query 177 AAAACTCGAGACTGGTTCTAATGGCTTGTCAAATTCAAGCTTCACGCGTTTTCCCAGTTC 236
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 AAAACTCGAGCCTGGTTCTAATGGCTTGTCAAATTCAAGCTTCACGCGTTTTCCCAATTC 60
Query 237 TAGAAATTGAAAAAGGTCTCTCCTTTATGATAAATGTCTTCCATAGGAGAATAAAAGCTT 296
| ||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||
Sbjct 61 TGGAAATTGAAAAAGGTCTCTCCTTTATGATTAATGTCTTCCATAGGAGAAGAAGAGCTT 120
Query 297 CGTCCATTACTCTCACTTCATTTCCTTATCCCATGAAAAGTTTTCAGATAAGAAGACCAA 356
|||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||
Sbjct 121 CGTCCATTACTCTCACTTCATTCCCTTATCCAATGAAAAGTTTTCAGCTAAGAAGACCAA 180
Query 357 ACCGGAAAATAGCGTTTGCGTTAGACACTGGTTCTTCTATTCCTGGAGATAGTGGT-GA- 414
||||||||||||||||||| |||||||| |||||||||||||||||||||| |||| ||
Sbjct 181 ACCGGAAAATAGCGTTTGCTTTAGACACAGGTTCTTCTATTCCTGGAGATAATGGTGGAG 240
Query 415 -AGGGCAAGAGATGAATGGAGACAGAACCGGTCTCGGTAGCACTCGGTTAGGTAGAATTG 473
||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 241 GAGGACAAGAGATGAATGGAGACAGAACCGGTCTCGGTAGCACTCGGTTGGGTCGAATTG 300
Query 474 CGATTGCAGGAGGCAAACAGTTACTTGGGAAGATAAACTCTGCAAGAAAAAACTTCCCAA 533
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGGTTGCAGGAGGCAAACAGTTACTTGGGAAGATAAACTCTGCAAGAAAAAACTTCCCAA 360
Query 534 TGAAGATATTTCTGCTGCTTCTTGGTTTCTACACTGCCAATGCACTAGCTACTATTCTTG 593
||||||||||||||||||||||||||||||| || ||||||||| | ||||| |||||||
Sbjct 361 TGAAGATATTTCTGCTGCTTCTTGGTTTCTATACCGCCAATGCATTGGCTACCATTCTTG 420
Query 594 GACAGACTGGTGATTGGGATGTGCTTGTTGCCGGAATCGTCGTTGCTGCGATCGAAGGAA 653
||||||||||||||||||||||||||||||| ||||| ||||| |||||||| |||||||
Sbjct 421 GACAGACTGGTGATTGGGATGTGCTTGTTGCGGGAATTGTCGTGGCTGCGATTGAAGGAA 480
Query 654 TCGGTATGCTTATGTATAAGAAACCGTCTTCTTCAATGTTTTCAGGGAAGTTGCAGTCTT 713
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 481 TCGGTATGCTTATGTATAAGAAACCGTCGTCTTCAATGTTTTCAGGGAAGTTGCAGTCTT 540
Query 714 TTGTTGTGTTTATGAATTTTTGGAAAGCTGGTGTTTGCTTAGGTCTCTTTGTTGATGCTT 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 541 TTGTTGTGTTTATGAATTTTTGGAAAGCTGGTGTTTGCTTAGGTCTCTTTGTTGACGCTT 600
Query 774 TCAAGTTGGGTAGTTAAAAAGACAAATCTTTCTTTTCTT 812
||||||| |||||||||| | | ||||||||||||||||
Sbjct 601 TCAAGTTAGGTAGTTAAAGA-A-AAATCTTTCTTTTCTT 637
> Ahg475635 jgi|Araly1|475635|fgenesh2_kg.2__765__AT1G65410.1
Length=1236
Score = 147 bits (79), Expect = 2e-34
Identities = 104/115 (90%), Gaps = 5/115 (4%)
Strand=Plus/Minus
Query 865 TCAATTAAAAGTTTCATTTTTGTTGGGGTATATGTTTGAGAATGCAGGTCTTGTTCTTGG 924
|||||||||||||||| ||||||| || ||| || ||||||||||||||||||||||||
Sbjct 1236 TCAATTAAAAGTTTCAGTTTTGTT--GGAATACGTCTGAGAATGCAGGTCTTGTTCTTGG 1179
Query 925 CACATTAAACCAGATTCTCATTGATGCATAATGAAATCTCAACTTACAATGCTTT 979
||||||||||| ||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1178 CACATTAAACC---TTCTCATTGATGCGTAATGATATCTCAACTTACAATGCTTT 1127
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36369262818
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5