BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65450.1
Length=1583
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315582 jgi|Araly1|315582|fgenesh1_pm.C_scaffold_2000615 2134 0.0
> Ahg315582 jgi|Araly1|315582|fgenesh1_pm.C_scaffold_2000615
Length=1353
Score = 2134 bits (1155), Expect = 0.0
Identities = 1289/1355 (95%), Gaps = 4/1355 (0%)
Strand=Plus/Plus
Query 62 ATGGGTTCTTCGTACCAAGAATCTCCACCGTTGCTTCTTGAAGATCTTAAGGTTACGATC 121
||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||| |||
Sbjct 1 ATGGGTTCTTCGTACCAAGAATCTCCACCATTGCTTCTTCAAGATCTCAAGGTTACTATC 60
Query 122 AAAGAATCAACACTCATTTTCCCATCTGAAGAAACCAGCGAGAGAAAATCCATGTTCTTA 181
||||||||| |||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 61 AAAGAATCATCACTCATTTTCCCATCCGATGAAACCAGTGAGAGAAAATCCATGTTCTTG 120
Query 182 TCCAACGTCGACCAAATTCTCAACTTTGACGTTCAAACAGTTCATTTCTTCCGACCTAAC 241
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||
Sbjct 121 TCCAACGTCGACCAAATACTCAACTTTGACGTCCAAACAGTTCATTTCTTCCGACCAAAC 180
Query 242 AAGGAGTTTCCACCGGAGATGGTCTCGGAGAAGCTGAGAAAGGCGTTGGTGAAA-CTCAT 300
|| || ||||| ||||||||||| |||||||||||||||||||||||||||||| | |||
Sbjct 181 AAAGATTTTCCTCCGGAGATGGTGTCGGAGAAGCTGAGAAAGGCGTTGGTGAAAGC-CAT 239
Query 301 GGACGCTTATGAGTTCTTGGCCGGGAGACTCCGCGTGGATCCTAGCTCTGGACGGCTTGA 360
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 240 GGACGCTTATGAGTTCTTGGCCGGGAGACTCCGGGTGGATCCTAGCTCTGGACGGCTGGA 299
Query 361 TGTTGACTGTAACGGTGCTGGAGCTGGCTTTGTGACGGCGGCGAGTGACTACACGTTGGA 420
|||||||||||| || || ||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 TGTTGACTGTAATGGCGCCGGAGCTGGCTTTGTGACGGCGGCGAGTGAGTACACGTTGGA 359
Query 421 GGAACTTGGAGATTTGGTTTATCCAAATCCAGCTTTTGCTCAATTGGTTACAAGTCAGCT 480
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 360 GGAACTTGGAGATTTGGTTTATCCAAATCCAGCTTTTGCTCAGTTGGTTACAAGTCAGCT 419
Query 481 T-CAGAGTTTGCCCAAAGATGATCAACCCTTGTTTGTCTTTCAGATAACATCATTCAAGT 539
| || ||||||||||||||||||||||||||||| | ||||||| |||||||||||||||
Sbjct 420 TCCA-AGTTTGCCCAAAGATGATCAACCCTTGTTCGCCTTTCAGGTAACATCATTCAAGT 478
Query 540 GCGGTGGATTTGCAATGGGAATCTCAACAAACCATACCACGTTCGATGGACTTAGTTTCA 599
||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||
Sbjct 479 GCGGTGGATTTGCAATGGGAATCTCAACAAACCATACAACGTTCGATGGGCTAAGTTTCA 538
Query 600 AAACATTCCTCGAAAACTTAGCTTCTCTACTTCACGAGAAGCCCTTATCAACACCTCCAT 659
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 539 AAACATTCCTCGAAAACTTAGCCTCTCTACTTCATGAGAAGCCCTTATCAACACCTCCAT 598
Query 660 GCAACGACCGTACTCTTCTCAAAGCTCGTGATCCACCAAGTGTTGCATTCCCACACCACG 719
||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||
Sbjct 599 GCAACGACCGTACTCTTCTCAAAGCTCGTAACCCACCAAGTGTCACATTCCCACACCACG 658
Query 720 AGCTTGTCAAGTTCCAAGACTGTGAGACAACAACAGTCTTCGAAGCTACTTCAGAGCACT 779
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 659 AGCTTGTCAAGTTCCAAGACTGTGAGACAACAACAGTCTTCGAAGCCACTTCACAGCACT 718
Query 780 TAGACTTCAAGATCTTCAAGCTATCCTCTGAACAAATCAAGAAGCTCAAGGAGAGAGCCT 839
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 719 TAGACTTCAAGATCTTCAAGCTATCCTCTGAGCAAATCAAGAAGCTCAAGGAGAGAGCCT 778
Query 840 CAGAGACTAGTAACGGTAATGTTCGCGTGACGGGTTTCAACGTTGTAACCGCTTTGGTCT 899
| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CGGAGACTAGTAGTGGTTATGTTCGCGTGACGGGTTTCAACGTTGTAACCGCTTTGGTCT 838
Query 900 GGAGGTGCAAGGCACTCTCTGTAGCAGCAGAGGAAGGAGAAGAAACCAATCTTGAAAGAG 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GGAGGTGCAAGGCACTCTCTGTAGCAGCAGAGGAAGGAGAAGAAACCAATCTTGAAAGAG 898
Query 960 AATCAACGATTCTTTATGCTGTGGACATTAGAGGGAGGCTGAATCCTGAGCTTCCACCGT 1019
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AATCAACGATTCTTTATGCGGTGGACATTAGAGGGAGGCTGAATCCTGAGCTTCCACCGT 958
Query 1020 CTTACACTGGAAACGCGGTTTTAACGGCATACGCAAAGGAGAAATGCAAGGCATTGCTTG 1079
| ||||||||||||||||||||||| || |||||||||| |||||| |||||||||||||
Sbjct 959 CCTACACTGGAAACGCGGTTTTAACTGCTTACGCAAAGGCGAAATGTAAGGCATTGCTTG 1018
Query 1080 AAGAGCCGTTTGGGAGGATTGTAGAAATGGTAGGAGAAGGGTCAAAGAGGATAACGGATG 1139
|||||||||||||||||||||| ||||| |||||||||||| |||| |||||||||||||
Sbjct 1019 AAGAGCCGTTTGGGAGGATTGTGGAAATAGTAGGAGAAGGGGCAAATAGGATAACGGATG 1078
Query 1140 AGTATGCGCGGTCTGCTATAGATTGGGGAGAGTTATACAAAGGGTTTCCCCATGGGGAAG 1199
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1079 AGTATGCGCGGTCTGCTATAGATTGGGGAGAGTTATACAAAGGGTTTCCACATGGGGAAG 1138
Query 1200 TTTTGGTTTCTTCTTGGTGGAAACTCGGATTCGCAGAGGTTGAGTATCCTTGGGGAAAGC 1259
||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1139 TTTTGGTTTCTTCGTGGTGGAAACTCGGTTTCGCAGAGGTTGAGTATCCTTGGGGCAAGC 1198
Query 1260 CTAAGTATAGCTGTCCCGTTGTCTATCATCGAAAAGACATTGTTTTGCTGTTTCCGGACA 1319
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1199 CTAAGTATAGCTGTCCCGTTGTCTATCATCGAAAAGACATAGTTTTGCTGTTTCCGGACA 1258
Query 1320 TCGATGGAGATAGTAAAGGTGTTTATGTCTTGGCTGCTTTGCCTTCTAAGGAGATGTCCA 1379
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
Sbjct 1259 TCGATGGAGATAGTAAAGGTGTTTATGTCTTGGCTGCTTTACCTTCTAAGGAGATGACAA 1318
Query 1380 AGTTTCAGCACTGGTTTGAAGACACTCTGTGCTGA 1414
|||||||||| ||||||||||||||||| ||||||
Sbjct 1319 AGTTTCAGCATTGGTTTGAAGACACTCTCTGCTGA 1353
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59306511465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5