BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65470.1
Length=2767
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925614 jgi|Araly1|925614|scaffold_201175.1 3725 0.0
> Ahg925614 jgi|Araly1|925614|scaffold_201175.1
Length=2491
Score = 3725 bits (2017), Expect = 0.0
Identities = 2350/2506 (94%), Gaps = 42/2506 (2%)
Strand=Plus/Plus
Query 147 Gtttttttttt-tGCGATGGACGAAGTTTCGACGGTGAATGAAAATGAGAATCGGAAGAC 205
||||||||||| ||||||||| |||||||||||||||||||||| ||| |||||||||||
Sbjct 7 GTTTTTTTTTTATGCGATGGAAGAAGTTTCGACGGTGAATGAAATTGAAAATCGGAAGAC 66
Query 206 GATGATAG-AGCCAAAGAAGCTGAATAAGCGGAAGAGAGAACCCACGGCGATTGAGAATC 264
|||||| | |||| || |||| |||||||||||||||||||||| ||||| |||||||||
Sbjct 67 GATGAT-GAAGCCGAATAAGCCGAATAAGCGGAAGAGAGAACCCGCGGCGGTTGAGAATC 125
Query 265 TAACATCTGAGGAGAAAGAATCTCAGATCTCGTCGTTGAATCTAGAGATGAAAGGGCTTT 324
|||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 126 TAACTTCTGAGGAGAAAGAAGCTCAGATCTCGTCGTTGAATTTAGAGATGAAAGGGCTTT 185
Query 325 TTGATTA-TTTCAGAGAAGTTATGGAT-AAGAGTAAGAGAACAGATCTGTTTTCT-GGAT 381
| | || |||| |||||||||||||| || ||||||| |||||||||||||||| || |
Sbjct 186 TCGCGTATTTTC-GAGAAGTTATGGATCAA-AGTAAGACAACAGATCTGTTTTCTAGG-T 242
Query 382 TTAGTGAATGTTCCTCAT-TGAATTCGATGGTGGCTTTGTTAATGGAGGAAATGAGTTTG 440
||||||||||||| || | ||||||| |||||||||||||| |||||||| |||||||||
Sbjct 243 TTAGTGAATGTTCGTC-TGTGAATTCAATGGTGGCTTTGTTGATGGAGGAGATGAGTTTG 301
Query 441 CCGTTGTCGAAGCTTGTAGATGAGATTTACTTGAAATTGAAGGAGAAGACTGAAAGTGTT 500
|| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 302 CCTTTGTCGAAGCTTGTTGATGAGATTTACTTGAAATTGAAGGAGAAGATTGAAAGTGTT 361
Query 501 ACTATGGTAGCTGTGAAGAGTGCTGTTGTTTCTGTTGGTCAGAGAGTTAGTTACGGTGTG 560
|||||||||||||||||||||||| |||||||||| ||||||||||| ||||| ||||||
Sbjct 362 ACTATGGTAGCTGTGAAGAGTGCTATTGTTTCTGTAGGTCAGAGAGTGAGTTATGGTGTG 421
Query 561 CTTAACGTAGATGCTGATGTTTTGGAGGATGATTCTGAATCTTGTCTTTGGTGCTGGGAG 620
|| || | ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 422 CTCAATGCAGATGCTGATGTTTTGGAGGATGATACTGAATCTTGTCTTTGGTGCTGGGAG 481
Query 621 ACGAGAGATCTGAAAATCATGCCGAGTTCCGTTCGTGGAGTGTTAAAACTTCGCCGGACT 680
||||||||||||||||| ||||||| ||| |||||||||||||||||| |||||||||||
Sbjct 482 ACGAGAGATCTGAAAATGATGCCGAATTCTGTTCGTGGAGTGTTAAAAATTCGCCGGACT 541
Query 681 TGTCGAAAGAAGATTCATGAAAGGATTACAGCAGTTTCTGCAATGTTAGCTGCATTACAA 740
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 542 TGTCGGAAGAAGATTCATGAAAGGATTACAGCAGTTTCTGCAATGTTAGCTGTATTACAA 601
Query 741 AGAGAAGAAACTGAAAAGTTGTGGAGATCTGATTTGAGTAAAGCTGCTGAGAAGCTTGGT 800
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 602 AGAGAAGAAACTGAAAAGTCGTGGAGATCTGATTTGAGTAAAGCTTCTGAGAAGCTTGGT 661
Query 801 AAAATACTGAGTGAGGTGGATATTCGATCATTCATGGATAACATGATGCAGAAGAACAGC 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 AAAATACTGAGTGAGGTGGATATTCGATCATTCATGGATAACATGATGCAGAAGAACAGC 721
Query 861 TCAGAAATGGCTGAGAAAGACTCAAAGAGAGAAGAGAAGCTGCTTCTTAAACAATTGGAG 920
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 722 ACAGAGATGGCTGAGAAAGACTCAAAGAGAGAAGAGAAGCTGCTTCTTAAACAGTTGGAG 781
Query 921 AAAAATAGATGTGAAGCTGAGAAGGAGAAGAAGAGAATGGAACGTCAAGTATTGAAAGAA 980
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 782 AAAAGTAGATGTGAAGCTGAGAAGGAAAAGAAGAGAATGGAACGTCAAGTATTGAAAGAA 841
Query 981 AAATTGCAACAAGAAAAAGAGCAGAAGCTACTGCAGAAAGCAATTGTTGATGAAAATAAT 1040
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 842 AGATTGCAACAAGAAAAAGAGCAGAAGCTACTGCAGAAAGCAATTATTGATGAAAATAAT 901
Query 1041 AAAGAAAAAGAAGAGACAGAGTCAAGAAAACGGATAAAGAAACAGCAAGATGAGTCGGAG 1100
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 AAAGAAAAGGAAGAGACTGAGTCAAGAAAACGGATAAAGAAACAGCAAGATGAGTCGGAG 961
Query 1101 AAGGAGCAGAAGCGTAGAGAGAAGGAACAAGCCGAGCTAAAGAAGCAACTTCAAGTACAG 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 AAGGAGCAGAAGCGTAGAGAGAAGGAACAAGCCGAGCTAAAGAAGCAACTTCAAGTACAG 1021
Query 1161 AAACAAGCTTCAATCATGGAACGGTTTCTTAAAAAGAGCAAAGATAGTTCATTGACCCAA 1220
|||||||||||||||||||| |||||||||||||| || ||||| |||||| ||||||||
Sbjct 1022 AAACAAGCTTCAATCATGGAGCGGTTTCTTAAAAAAAGTAAAGACAGTTCAGTGACCCAA 1081
Query 1221 CCCAAACTTCCTTCCAGTGAAGTAACTGCTCAGGAGCTGTCATGTACAAAACATGAGAAT 1280
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||
Sbjct 1082 CCCAAACTTCCTTCCAGTGAAGTAACTGCTCAAGAGCCGTCATGTACAAAACATGATAAT 1141
Query 1281 GAAATTGGAAAAGTTGTTCAGGCAATTGACAACGCCTTTTCAACAACTTGTGAAGCTACA 1340
|||| ||||| |||| ||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1142 GAAAGTGGAACAGTTATTCAGGCCATCGACAACGCCTTTTCAACAACTTGTGAAGCTACA 1201
Query 1341 GTTGATGATATTCGCAGGGAACACTTTGCTTCCTGGCGTCAGTTGGGTCATTTGCTCTCG 1400
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1202 GTTGATGATATTCGCAGGGAACACTTTGCTTCCTGGCGTCAGTTGGGTCATTCGCTCTTG 1261
Query 1401 AGTTCGAAAAAACATTGGGGGATGCGTAGGCAGCCTAAGAGTGAACTGTTTCCAAAACTA 1460
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1262 AGTTCGAAAAAGCATTGGGGGATGCGTAGGCAGCCTAAAAGTGAACTGTTTCCAAAACTA 1321
Query 1461 AAACTATCTACAAATAGTGGAGTAACATCTGACGGTGAACCTAACATGGAGAAGCAAGGG 1520
|||||| ||||| | | | || |||||||||||||||||||||||||||
Sbjct 1322 AAACTAGCTACA--T----------C--C-GATGGTGAACCTAACATGGAGAAGCAAGGG 1366
Query 1521 GATGGATGTGAAGAGAATAACTTTGATGGT--AG---GCAGT-GTAAG--C----CTTCC 1568
|||||| |||||||||| |||||||||||| | ||| | || || | |||||
Sbjct 1367 GATGGACGTGAAGAGAAAAACTTTGATGGTGTAACTTGCATTAGTCAGTGCGAGTCTTCC 1426
Query 1569 TCATCTAATCGTAAGAAGTCCAGGAGGGTCAAGCAGTTGTTACAATTTGATAAAAGCTGC 1628
|||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 1427 TCATCTGATCGTAAGAAGTCCAGGAGGGCCAAGCAGTTGCTACAATTTGATAAAAGCTGC 1486
Query 1629 AGACCAGGCTTTTATGGTATCTGGCCCAGCCAAAGTCAAGTTGTAAAGCCACGTCGTCCT 1688
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1487 AGACCAGGCTTTTATGGTATCTGGCCTAGCCAAAGTCAAGTTGTAAAGCCACGTCGTCCT 1546
Query 1689 CTGCAAAAGGATCCAGAATTGGATTATGAAGTTGATAGTGATGAAGAATGGGAAGAGGAA 1748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1547 CTGCAAAAGGATCCAGAATTGGATTATGAAGTTGATAGTGATGAAGAATGGGAAGAGGAA 1606
Query 1749 GAAGCTGGTGAAAGCCTTTCAGATTGTGAGAAAGATGAAGACGAAAGTTTGGAAGAAGGA 1808
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1607 GAAGCTGGTGAAAGCCTTTCAGATTGTGAGAAAGATGAAGATGACAGTTTGGAAGAAGGG 1666
Query 1809 TGTTCAAAGGCTGATGATGAAGATGATAGTGAAGATGACTTTATGGTGCCTGATGGATAT 1868
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1667 TGTTCAAAGGCTGATGATGAAGATGATAGTGAAGATGACTTTATGGTTCCTGATGGATAT 1726
Query 1869 CTCTCAGAAGATGAGGGGGTCCAAGTGGACAGAATGGACATTGATCCGTCTGAACAGGAT 1928
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1727 CTATCAGAAGATGAGGGGGTCCAAGTGGACAGAATGGACATTGATCCGGCTGAACAGGAT 1786
Query 1929 GCAAATACGACATCATCTAAGCAAGATCAAGAAAGTCCAGAGTTTTGCGCATTACTCCAA 1988
|||| |||| |||||||||||||||||||||||| || |||||||||| ||||||||||
Sbjct 1787 GCAAGTACGCCATCATCTAAGCAAGATCAAGAAAATCAAGAGTTTTGCATATTACTCCAA 1846
Query 1989 CAACAAAAACATCTGCAAAATTTAACTGACCATGCTCTGAAGAAAACGCAGCCACTGATC 2048
||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||
Sbjct 1847 CAACAAAAACATCTGCAAAGTTTAACTGACCACGCTCTCAAGAAAACGCAGCCACTGATC 1906
Query 2049 ATATGTAACCTAACTCATGAGAAGGTCTCTCTCTTAGCTGCTAAAGATCTAGAAGGGACA 2108
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1907 ATATGTAACCTAACGCATGAGAAGGTCCCTCTCTTAGCTGCTAAAGATCTAGAAGGGACA 1966
Query 2109 CAAAAAGTAGAACAAATATGTCTGCGAGCTCTCATGGTGCGACAATTCCCTTGGTCTTCT 2168
|||||||| |||||||||||||| ||||||||| | ||||||| ||||||||||||||||
Sbjct 1967 CAAAAAGTGGAACAAATATGTCTACGAGCTCTCGTAGTGCGACCATTCCCTTGGTCTTCT 2026
Query 2169 CTCATTGAGATATCGATCAACGACATTCAAGATGAAGATCAAGAAGCCAGCAAGTTTTCT 2228
||||| |||||||| ||||| |||||||||||||| |||| |||| ||| ||||| | ||
Sbjct 2027 CTCATCGAGATATCAATCAATGACATTCAAGATGAGGATCTAGAAACCAACAAGTCTACT 2086
Query 2229 TGTAGCCAGAGCACTCCTCCATCTAATTCAAAAGCAAAAATC-ATACCAGACTCAGATTT 2287
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 2087 TGTAGCCAGAGCACTCCTCCATCTAATTCAAAAGCAAAA-TCCATACCAGACTCAGATTT 2145
Query 2288 GCTTACAGTTGTATCAACTATTCAATCATGCTCTCAAGGTATCAATAGGGTAGTTGAAAC 2347
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2146 GCTTACAGTTGTATCAACTATTCAATCATGCTCTCAAGGTATCAATAGAGTAGTTGAAAC 2205
Query 2348 ATTACAGCAGAAGTTCCCTGATGTTCCAAAGACCAAGCTTAGACAAAAAGTGCGTGAAAT 2407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2206 ATTACAGCAGAAGTTCCCTGATGTTCCAAAGACCAAGCTTAGACAAAAAGTGCGTGAAAT 2265
Query 2408 ATCAGATTTCGAGGATAGTCGTTGGCAGGTAAAGAAAGAAGTATTGACAAAGCTTGGATT 2467
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 2266 ATCAGATTTCGAGGATAGTCGTTGGCAGGTAAAGAAAGAAGTATTAACGAAGCTTGGATT 2325
Query 2468 ATCACCGTCACCAGATAAAGGCGGTAAGAGATTACCGAAAACGATATCTACATTCTTCTC 2527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2326 ATCACCGTCACCAGATAAAGGCGGTAAGAGATTACCGAAAACGATATCTACATTCTTCTC 2385
Query 2528 AAAACGTTGTTTACCTCCATCCACAAAACCACAACCTGCAGTTGAAGACGCAGCAGAGAG 2587
|||||||||||| |||||||||||||| ||||||||| |||||||||||||| |||||||
Sbjct 2386 AAAACGTTGTTTGCCTCCATCCACAAAGCCACAACCTACAGTTGAAGACGCATCAGAGAG 2445
Query 2588 ATTGGAAAACGAAAATGCTTAAGTCTACT-CACAGTTTCCATCTTT 2632
|||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct 2446 ATTGGAAAACGAAAATGCTTGAGTCT-CTGCACAGTTTCCATCTTT 2490
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104405361545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5