BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65481.1
Length=517
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907950 jgi|Araly1|907950|Al_scaffold_0002_1031 399 7e-111
> Ahg907950 jgi|Araly1|907950|Al_scaffold_0002_1031
Length=264
Score = 399 bits (216), Expect = 7e-111
Identities = 249/265 (94%), Gaps = 2/265 (1%)
Strand=Plus/Plus
Query 1 ATGACAGGAAAGGCACCATTCTTCGTGATTCTCATCGCAGCTCTGCTCCTTTTGTCTTCT 60
|||||| ||||||||||||||||||| |||||||||| |||| |||||||||||||| ||
Sbjct 1 ATGACAAGAAAGGCACCATTCTTCGTAATTCTCATCGTAGCTTTGCTCCTTTTGTCTCCT 60
Query 61 TTCTTCTTCGGAGAAGTAAAAGCTA-TATCGACCAAACAACCAAAGCATCGGAAGCTCGG 119
||||||||||| || || |||| | ||||||||||||||||||||||||||||||||||
Sbjct 61 CTCTTCTTCGGACAAATAGAAGC-ACTATCGACCAAACAACCAAAGCATCGGAAGCTCGG 119
Query 120 GAATAGAGAAGGAGATGAAAATAGGAGCAATGAAATTGTTGTCCAAATGAAAGCAAGAGT 179
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 120 GAATAGAGAAGGAGATGAAAATAGGAGTAATGAAATTGTTGTCCAAATGAAAGCAAGAGT 179
Query 180 AAAGCGAAGCAAGTCAAAAAGGGGACCCCAGAAAAAGGAACCTTATAAGAAGCCACCTTG 239
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 180 GAAGCGCAGCAAGTCAAAAAGGGGACCCCAAAAAAAGGAACCTTATAAGAAGCCACCTTG 239
Query 240 CAGTCCCCCAACTCATCCAGCATAA 264
|||||||||||||||||||| ||||
Sbjct 240 CAGTCCCCCAACTCATCCAGAATAA 264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18810705377
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5