BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G65486.1

Length=326
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg475649 jgi|Araly1|475649|fgenesh2_kg.2__779__AT1G65486.1          488    9e-138


> Ahg475649 jgi|Araly1|475649|fgenesh2_kg.2__779__AT1G65486.1
Length=316

 Score =  488 bits (264),  Expect = 9e-138
 Identities = 300/317 (95%), Gaps = 3/317 (1%)
 Strand=Plus/Plus

Query  1    ATGGGTTTGATGTCACCAAATATCGCTGCATTTGTGTTACCAATGCTTCTTGTACTTTTC  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGGTTTGATGTCACCAAATATCGCTGCATTTGTGTTACCAATGCTTCTTGTACTTTTC  60

Query  61   ACTATTTCCTCTCAAGTTGAAGTTGTGGAATCTACAGGCCGAAAACTTTCGTGGGCGTTT  120
            |||||| |||||||||||||||||||||||||||||||||| ||||||| ||||| ||||
Sbjct  61   ACTATTGCCTCTCAAGTTGAAGTTGTGGAATCTACAGGCCGCAAACTTTTGTGGGGGTTT  120

Query  121  AACGGAGCACCTATCGTATTTACTCCACCCTCAAGTTCATGTGGAGGTTCTCCGGCAGCA  180
            ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct  121  AACGGAGCACCTATCGTATATACCCCACCCTCAAGTTCATGTGGAGGTTCTCCGGCAGCA  180

Query  181  GTAATGGCTTCCGAGTGGATGCCACGCCGACCATGCAGACGTA-CTCGTCCTCCCGGAAC  239
              ||||||||||||||||||||||  |||||| |||||||||| | ||||||||||||||
Sbjct  181  ACAATGGCTTCCGAGTGGATGCCAAACCGACCTTGCAGACGTAGC-CGTCCTCCCGGAAC  239

Query  240  TAACATCCCTGTTTCTCAATCTCCTTAATACTCACCTGA-ACTTCGAGTTTGTGTCAGGA  298
            ||| ||||||||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct  240  TAATATCCCTGTTTCTCAATCTCCTTAATACTCACCTAATAATTCGAGTTTGTGTCAGGA  299

Query  299  TTTTCAAGTTATATCCT  315
            |||||||||||||||||
Sbjct  300  TTTTCAAGTTATATCCT  316



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11522987878


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5