BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65500.1
Length=522
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925639 jgi|Araly1|925639|scaffold_201200.1 438 2e-122
Ahg925635 jgi|Araly1|925635|scaffold_201196.1 422 2e-117
Ahg925636 jgi|Araly1|925636|scaffold_201197.1 416 7e-116
> Ahg925639 jgi|Araly1|925639|scaffold_201200.1
Length=304
Score = 438 bits (237), Expect = 2e-122
Identities = 282/303 (93%), Gaps = 5/303 (2%)
Strand=Plus/Plus
Query 1 AAAACGCAACTAAGGAGAAAATGGGTAT-GAAGTCTCCAAATATTGCTGCATTTATGTTA 59
|||||||||| || ||| |||||||| | |||||||||||||||| ||||| || |||||
Sbjct 5 AAAACGCAACGAAAGAG-AAATGGGT-TCGAAGTCTCCAAATATTTCTGCACTTGTGTTA 62
Query 60 CCACTGCTTCTTATACTTTTCACGCTTTCCTCTCAGCTTAAAGTCGTGGAATCTACAGGC 119
||||||||||||||||| ||||| ||||||||||||||| |||||||||||| |||||||
Sbjct 63 CCACTGCTTCTTATACTCTTCACTCTTTCCTCTCAGCTTGAAGTCGTGGAATGTACAGGC 122
Query 120 CGCAAACTTG-CGTGGGGGTTTTCGGGAACACCTATCGTGTACACACCACCTTCAAGGTC 178
||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 123 CGCAAAC-TGTCGTGGGGGTTTTCGGGAACGCCTATCGTGTACACACCACCTTCAAGGTC 181
Query 179 ATGTGGAACTTCTCCAGCAGTATTCACTTCGAAGTGGAGGAGACCCCGACCATGCAGGCT 238
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 182 ATGTGGAACTTCTCCAGCAGTATTCACTTGGAAGTGGAGGAGACCCCGACCATGCAGACT 241
Query 239 TCCTCCAGGCAGTTATATTCCTGCTTCTGACCAATCTCCTTAACTACGTACTTCTGTGTC 298
||||||||| |||||||||||||||||||||||||||||||||||| || | ||||||||
Sbjct 242 TCCTCCAGGAAGTTATATTCCTGCTTCTGACCAATCTCCTTAACTATGTGCGTCTGTGTC 301
Query 299 TTT 301
|||
Sbjct 302 TTT 304
> Ahg925635 jgi|Araly1|925635|scaffold_201196.1
Length=305
Score = 422 bits (228), Expect = 2e-117
Identities = 280/304 (92%), Gaps = 7/304 (2%)
Strand=Plus/Plus
Query 1 AAAACGCAACTAAGGAGAAAATGGGTAT-GAAGTCTCCAAATATTGCTGCA-TTTATGTT 58
|||||||||| || ||| |||||||| | |||||||||||||||| ||||| ||| ||||
Sbjct 6 AAAACGCAACGAAAGAG-AAATGGGT-TCGAAGTCTCCAAATATTTCTGCACTTT-TGTT 62
Query 59 ACCACTGCTTCTTATACTTTTCACGCTTTCCTCTCAGCTTAAAGTCGTGGAATCTACAGG 118
| |||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||
Sbjct 63 AACACTGCTTCTTATACTTTTCACTCTTTCCTCTCAGCTTGAAGTCGTGGAATGTACAGG 122
Query 119 CCGCAAACTTG-CGTGGGGGTTTTCGGGAACACCTATCGTGTACACACCACCTTCAAGGT 177
|||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 123 CCGCAAAC-TGTCGTGGGGGTTTTCGGGAACGCCTATCGTGTACACACCACCTTCAAGGT 181
Query 178 CATGTGGAACTTCTCCAGCAGTATTCACTTCGAAGTGGAGGAGACCCCGACCATGCAGGC 237
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 182 CATGTGGAACTTCTCCAGCAGTATTCACTTGGAAGTGGAGGAGACCCCGACCATGCAGGC 241
Query 238 TTCCTCCAGGCAGTTATATTCCTGCTTCTGACCAATCTCCTTAACTACGTACTTCTGTGT 297
|||||||||| |||||||||||||||||| | |||| ||||||||| || | |||||||
Sbjct 242 TTCCTCCAGGAAGTTATATTCCTGCTTCTAATGAATCACCTTAACTATGTGCGTCTGTGT 301
Query 298 CTTT 301
||||
Sbjct 302 CTTT 305
> Ahg925636 jgi|Araly1|925636|scaffold_201197.1
Length=305
Score = 416 bits (225), Expect = 7e-116
Identities = 279/304 (92%), Gaps = 7/304 (2%)
Strand=Plus/Plus
Query 1 AAAACGCAACTAAGGAGAAAATGGGTAT-GAAGTCTCCAAATATTGCTGCA-TTTATGTT 58
|||||||||| || ||| |||||||| | ||||||| |||||||| ||||| ||| ||||
Sbjct 6 AAAACGCAACGAAAGAG-AAATGGGT-TCGAAGTCTACAAATATTTCTGCACTTT-TGTT 62
Query 59 ACCACTGCTTCTTATACTTTTCACGCTTTCCTCTCAGCTTAAAGTCGTGGAATCTACAGG 118
| |||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||
Sbjct 63 AACACTGCTTCTTATACTTTTCACTCTTTCCTCTCAGCTTGAAGTCGTGGAATGTACAGG 122
Query 119 CCGCAAACTTG-CGTGGGGGTTTTCGGGAACACCTATCGTGTACACACCACCTTCAAGGT 177
|||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 123 CCGCAAAC-TGTCGTGGGGGTTTTCGGGAACGCCTATCGTGTACACACCACCTTCAAGGT 181
Query 178 CATGTGGAACTTCTCCAGCAGTATTCACTTCGAAGTGGAGGAGACCCCGACCATGCAGGC 237
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 182 CATGTGGAACTTCTCCAGCAGTATTCACTTGGAAGTGGAGGAGACCCCGACCATGCAGGC 241
Query 238 TTCCTCCAGGCAGTTATATTCCTGCTTCTGACCAATCTCCTTAACTACGTACTTCTGTGT 297
|||||||||| |||||||||||||||||| | |||| ||||||||| || | |||||||
Sbjct 242 TTCCTCCAGGAAGTTATATTCCTGCTTCTAATGAATCACCTTAACTATGTGCGTCTGTGT 301
Query 298 CTTT 301
||||
Sbjct 302 CTTT 305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19001483322
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5