BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G65510.1

Length=480
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg907974 jgi|Araly1|907974|Al_scaffold_0002_1055                    361    3e-99
  Ahg925637 jgi|Araly1|925637|scaffold_201198.1                        248    3e-65


> Ahg907974 jgi|Araly1|907974|Al_scaffold_0002_1055
Length=243

 Score =  361 bits (195),  Expect = 3e-99
 Identities = 229/245 (93%), Gaps = 4/245 (2%)
 Strand=Plus/Plus

Query  4    ATGGGTTCGAAGACATCAACA-AATATGGTTGCTCTTCTCTTATCTCTTCTTATTCTGAT  62
            |||||||||||||||||| || || |||| ||||||||||||||||||||||||||||||
Sbjct  1    ATGGGTTCGAAGACATCATCACAA-ATGGCTGCTCTTCTCTTATCTCTTCTTATTCTGAT  59

Query  63   TTTCACTCTTTCCTCTCAAGTTA-AAGTCGTCGAGGCTACAAGTCGCAAACTTGCAAACG  121
            ||||||||||||||||||||||| || |||||||||||| ||| ||||||||||||||||
Sbjct  60   TTTCACTCTTTCCTCTCAAGTTAGAA-TCGTCGAGGCTAAAAGCCGCAAACTTGCAAACG  118

Query  122  GAAGGCCCATCGTGTGGACTCCGGCATCTAGATCATGTGGAGCTTCCCATGCATCGTGGA  181
            ||||||| || ||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct  119  GAAGGCCAATTGTGTGGACTCCTGCATCTAGATCATGTGGAGCTTCCCATGCATCATGGA  178

Query  182  AGAAGAATAATGGACCTTGTAAACGTCCTCCGAGAACAGCTCCTGCTTCTTACAACTCTC  241
            |||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  179  AGAAGAATCACGGACCTTGCAAACGTCCTCCGAGAACAGCTCCTGCTTCTTACAACTCTC  238

Query  242  CTTAA  246
            | |||
Sbjct  239  CATAA  243


> Ahg925637 jgi|Araly1|925637|scaffold_201198.1
Length=196

 Score =  248 bits (134),  Expect = 3e-65
 Identities = 150/158 (95%), Gaps = 0/158 (0%)
 Strand=Plus/Plus

Query  1    AAAATGGGTTCGAAGACATCAACAAATATGGTTGCTCTTCTCTTATCTCTTCTTATTCTG  60
            ||||||||||| ||||||||| || |||||||||||||||||||||||||||| ||||||
Sbjct  18   AAAATGGGTTCAAAGACATCATCACATATGGTTGCTCTTCTCTTATCTCTTCTCATTCTG  77

Query  61   ATTTTCACTCTTTCCTCTCAAGTTAAAGTCGTCGAGGCTACAAGTCGCAAACTTGCAAAC  120
            ||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||
Sbjct  78   ATTTTCACTCTTTCCTCTCAAATTAGAGTCGTCGAGGCTACAAGCCGCAAACTTGCAAAC  137

Query  121  GGAAGGCCCATCGTGTGGACTCCGGCATCTAGATCATG  158
            ||||||||||| ||||||||||||||||||||||||||
Sbjct  138  GGAAGGCCCATTGTGTGGACTCCGGCATCTAGATCATG  175



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17398948584


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5