BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65520.1
Length=962
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475652 jgi|Araly1|475652|fgenesh2_kg.2__782__AT1G65520.1 1170 0.0
Ahg925638 jgi|Araly1|925638|scaffold_201199.1 287 1e-76
> Ahg475652 jgi|Araly1|475652|fgenesh2_kg.2__782__AT1G65520.1
Length=759
Score = 1170 bits (633), Expect = 0.0
Identities = 709/746 (95%), Gaps = 4/746 (1%)
Strand=Plus/Plus
Query 95 AGAGAAATGTGTTCATTAGAGAAACGTGATCGTCTTTTCATACTAAAACTCACCGGCGAC 154
||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1 AGAGAAATGTGTTCACTAGAGAAACGTGGTCGACTTTTCATACTAAAACTCACCGGCGAC 60
Query 155 GGCGAACACCGTCTAAACCCAACCTTACTCGACTCTCTCCGCTCCACCATCAACCAAATC 214
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 GGCGAACACCGTCTAAACCCAACCTTACTCGACTCTCTCCGCTCCACCATCAACAAAATC 120
Query 215 CGATCAGATCCATCATTTTCACAATCAGTACTCATCACAACATCAGATGGTAAATTCTTC 274
|||||||||||||||| |||| ||||||| || ||||||||||| |||||||||||||||
Sbjct 121 CGATCAGATCCATCATCTTCAAAATCAGTCCTAATCACAACATCCGATGGTAAATTCTTC 180
Query 275 TCCAACGGCTACGATCTCGCTTTAGCCGAGTCAAATCCTTCTCTCTCTGTTGTAATGGAC 334
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 181 TCCAACGGTTACGATCTCGCTTTAGCCGAGTCAAATCCTTCTCTCTCTGTTCTAATGGAC 240
Query 335 GCAAAACTTAGATC-CTTAGTCGCCGATCTAATCTCTCTTCCTATGCCAACAATCGCCGC 393
|||||||||||||| || | |||||||||| |||||||||||||||||||||||||||||
Sbjct 241 GCAAAACTTAGATCTCTAA-TCGCCGATCTGATCTCTCTTCCTATGCCAACAATCGCCGC 299
Query 394 CGTCACAGGTCACGCTTCCGCCGCGGGATGTATTTTAGCGATGAGTCATGATTATGTATT 453
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 300 CGTCACTGGTCACGCCTCCGCCGCGGGATGTATTTTAGCGATGAGTCATGATTATGTGTT 359
Query 454 GATGCGTCGTGATAGAGGTTTTTTGTATATGAGTGAATTGGATATTGAGTTGATAGTTCC 513
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 360 GATGCGTCGTGATAGAGGTTTTTTGTATATGAGTGAATTGGATATTGAGTTAATAGTTCC 419
Query 514 GGCGTGGTTTATGGCTGTTATTAGGG-GTAAGATTGGTTCTCCGGCGGCCAGAAGGGATG 572
||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||
Sbjct 420 GGCGTGGTTTATGGCTGTTATTAGGATG-AAGATTGGTTCTCCGGCGGCGAGAAGGGATG 478
Query 573 TGATGTTGACGGCGGCGAAAGTGACGGCGGATGTGGGTGTTAAGATGGGGATTGTTGATT 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TGATGTTGACGGCGGCGAAAGTGACGGCGGATGTGGGTGTTAAGATGGGGATTGTTGATT 538
Query 633 CGGCGTATGGTAGTGCGGCGGAGACGGTTGAAGCCGCCATTAAGTTAGGTGAGGAGATTG 692
||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 539 CGGCGTATGATAGTGCGGTGGAGACGGTTGAAGCCGCCGTTAAGTTAGGTGAGGAGATTA 598
Query 693 TTCAGAGAGGTGGTGATGGACACGTGTATGGTAAGATGAGAGAGAGTCTTTTAAGAGAGG 752
||||| | || |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 599 TTCAGCGTGGAGGTGATGGACACGTGTATGGTAAGATGAGAGAGACTCTTTTAAGAGAGG 658
Query 753 TTCTTATCCATACGATTGGTGAATATGAGAGTGGTTCAAGTGTGGTGCGTAGCACTGGAT 812
|||| | |||||||||||||||| |||||||||||| ||||||||||||| ||||||||
Sbjct 659 TTCTGAGCCATACGATTGGTGAAGATGAGAGTGGTTTGAGTGTGGTGCGTAACACTGGAT 718
Query 813 CTAAACTTTAGAACATGTTTGTACTT 838
||||||||||||||||||||||||||
Sbjct 719 CTAAACTTTAGAACATGTTTGTACTT 744
> Ahg925638 jgi|Araly1|925638|scaffold_201199.1
Length=285
Score = 287 bits (155), Expect = 1e-76
Identities = 215/243 (88%), Gaps = 7/243 (3%)
Strand=Plus/Plus
Query 508 AGTTCCGGCGTGGTTTATGGCTGTTATTAGGGGT-AAGATTGGTTCTCCGGCGGCCAGAA 566
|||||| ||||| |||||||||||||||| || | |||||| |||||||| |||| | ||
Sbjct 7 AGTTCCAGCGTGATTTATGGCTGTTATTA-GGATGAAGATTTGTTCTCCGACGGCGACAA 65
Query 567 GGGATGTGATGTTGACGGCGGCGAAAGTGACGGCGGATGTGGGTGTTA-AGATGGGGATT 625
||||||||||||| ||| |||||||||||||||||||||||||||| | |||||||||||
Sbjct 66 GGGATGTGATGTTTACGTCGGCGAAAGTGACGGCGGATGTGGGTGT-AGAGATGGGGATT 124
Query 626 GTTGATTCGGCGTATGGTAGTGCGGCGGAGACGGTTGAAGCCGCCATTAAGTTAGGTGAG 685
||||||||||| |||| |||||| |||| ||||||||||| |||| ||||||||||||||
Sbjct 125 GTTGATTCGGCTTATGATAGTGCAGCGGGGACGGTTGAAGTCGCCGTTAAGTTAGGTGAG 184
Query 686 GAGATTGTTCAGA-GAGGTGGTGATGGACACGTGTATGGTAAGATGAGAGAGAGTCTTT- 743
|||||| || || | |||||||||| ||||||||||||||||||| |||||| |||||
Sbjct 185 GAGATTATT-AGGCGTGGTGGTGATGAACACGTGTATGGTAAGATGGGAGAGACTCTTTG 243
Query 744 TAA 746
|||
Sbjct 244 TAA 246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35721173229
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5