BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65560.1
Length=1399
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925647 jgi|Araly1|925647|scaffold_201208.1 1607 0.0
> Ahg925647 jgi|Araly1|925647|scaffold_201208.1
Length=1093
Score = 1607 bits (870), Expect = 0.0
Identities = 1022/1096 (93%), Gaps = 8/1096 (1%)
Strand=Plus/Plus
Query 106 CCATCACAGACTCATAACAAATGGGAGAAGTTTCAGTGGTGGAGAACAAGAAAGTGATAC 165
|||||||||| | | |||||||| |||| || |||||||||||||||||||||||||||
Sbjct 1 CCATCACAGATTTAGCACAAATGGAAGAAATTGCAGTGGTGGAGAACAAGAAAGTGATAC 60
Query 166 TAAAGAATTATGTAGATGGTATTCCTACAGAAACAGACATGGAAGTGAAACTCGGAGAAA 225
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 TAAAGAATTATGTAGATGGCATTCCTAAAGAAACAGACATGGAAGTGAAACTCGGAGAAA 120
Query 226 CAATTGAGCTAAAAGCACCAAAAGGATCTTCTTGTTTCCTCGTCAAAAATCTATACTTGT 285
|||||||||||| |||||||||||| ||||||| |||||||||||||||||| |||||||
Sbjct 121 CAATTGAGCTAAGAGCACCAAAAGGGTCTTCTTCTTTCCTCGTCAAAAATCTCTACTTGT 180
Query 286 CTTGTGATCCTTACATGAGAGGTCGTATGCGTGATTTTCACGGTTCCTATCTCCCGCCTT 345
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 181 CTTGTGATCCTTACATGAGAGGTCGTATGCGTGACTTTCACGGTTCCTATCTCCCACCTT 240
Query 346 TTGTTCCTGGCCAACGTATCGAAGGGTTTGGTTTAGC-AAGAGTGATAGATTCTGATGA- 403
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 241 TTGTTCCTGGCCAACGTATCGAAGGGTTTGGTTTAGCGAA-AGTGATAGATTCTGATGAC 299
Query 404 TACTAATTATAAGCCCGGCGATATAGTC-TCTGGTATCATTGGTTGGGAAGAATACAGTT 462
| ||||||||||||||| || ||| || | || || || |||||||||||||||||||
Sbjct 300 GA-TAATTATAAGCCCGGTGACATAATCGGC-GGGATTATAGGTTGGGAAGAATACAGTT 357
Query 463 TGCTACGTAGTTCAGATAACCTACAGTTGAGAAATATTCAGTTAGACGACGACATTCCGC 522
|||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 358 TGCTTCGTAGTTCAGATAACCTGCAGTTGAGAAAGATTCAGTTAGACGACGACATTCCGC 417
Query 523 TTTCTTATCATCTCGGACTTCTCGGGATGGCTGGATTTACAGCATATGCAGGGTTTAATG 582
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 418 TTTCTTATCATCTCGGACTTCTTGGGATGGCTGGATTTACAGCATATGCAGGGTTTAATG 477
Query 583 AGATATGTTGTCCTAAGAAAGGGGACAGTGTTTTTGTCTCTGCAGCATGTGGAGCAGTTG 642
|||||||||||||||||||||| || ||||||||||| |||||||||| |||||||||||
Sbjct 478 AGATATGTTGTCCTAAGAAAGGAGAGAGTGTTTTTGTATCTGCAGCATCTGGAGCAGTTG 537
Query 643 GACAACTTGTTGGTCAGCTAGCTAAGTTGCACGGCTGCTATGTTGTTGGTAGCGCCGGTA 702
||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||
Sbjct 538 GACAACTTGTTGGTCAGCTAGCTAAATTGCACGGCTGCCATGTTGTTGGGAGCGCCGGTA 597
Query 703 GTAAGCAAAAGGTTGAGATCCTTAAAAACGAGCTTGGATATGATGAAGCCTTTAACTACA 762
||||||||||||||||| ||||| ||||||||||||| | |||| |||||||||||||||
Sbjct 598 GTAAGCAAAAGGTTGAGCTCCTTCAAAACGAGCTTGGGTTTGATAAAGCCTTTAACTACA 657
Query 763 AGGAAGAGGCTGATCTTGATACTGCTTTGAAGAGGTACTTCCCGGAGGGGATAGATATCT 822
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
Sbjct 658 AGGAAGAGGCTGATCTTGATGCTGCTTTGAAGAGGTACTTCCCGGAGGGGATCGATATTT 717
Query 823 ACTTCGATAACGTGGGTGGATCCATGCTTGATGCAGCGCTCCTCAACATGAAGGTACGTG 882
||||||| || ||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 718 ACTTCGACAATGTGGGAGGATCCATGCTTGATGCAGCGCTCCTCAACATGAAGGTCCGTG 777
Query 883 GAAGAATCGCGCTCTGTGGAATGGTGTCTTTGCAAAGCCTCTCAACTTCATCACAAGGAA 942
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 778 GAAGAATCGCGCTCTGTGGAATGGTGTCTTTGCAAAGCCTCTCAACCTCATCACAAGGAA 837
Query 943 TCAAGAACCTATACAGCGCTATCTACAAACGTTTAAGGTTAGAAGGGTTCTTGCAGAGCG 1002
|||| |||||||||| ||||||| ||||||| |||| ||||||||||||||||||| |
Sbjct 838 TCAACAACCTATACAACGCTATCCCCAAACGTGTAAGACTAGAAGGGTTCTTGCAGAGTG 897
Query 1003 ATTACCTTCA-TATCTTCCCACAGTTTCTTGAAAATGTCAAGAGATATTACAAAGAAGGC 1061
||||||| || ||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 898 ATTACCT-CAATATCTTCCCACAGTTTCTTGAAAATGTCATGAGATATTACAAGGAAGGC 956
Query 1062 AAGATTGTCTACGTCGAAGATATATCTGAAGGCCTCGACCTCGCTCCCGCTGCACTTGTT 1121
|||||||| ||| |||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 957 AAGATTGTATACATCGAAGATATGTCTGAAGGCCTCGAGCTCGCTCCTGCTGCACTTGTT 1016
Query 1122 GGGCTGTTTTCCGGGAAAAATATCGGTAAACAGGTTGTTCGGGTTGCTAAAGAGTGATTG 1181
||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||
Sbjct 1017 GGGTTGTTTTCCGGGAAAAATATTGGTAAACAGGTCGTTCGGGTTGCTAAAGAGTAATTG 1076
Query 1182 TTTCTGAAAGTATATT 1197
||||||||||||||||
Sbjct 1077 TTTCTGAAAGTATATT 1092
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52297906385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5