BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65570.1
Length=1194
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925648 jgi|Araly1|925648|scaffold_201209.1 1768 0.0
> Ahg925648 jgi|Araly1|925648|scaffold_201209.1
Length=1235
Score = 1768 bits (957), Expect = 0.0
Identities = 1112/1189 (94%), Gaps = 2/1189 (0%)
Strand=Plus/Plus
Query 1 ATGGCATTGTTTCTAAGCTTTGTTCAGGTCTTTAGCATCGTTATAACAATCATTATGTCC 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 21 ATGGCATTGTTTCTAAGCTTTGTTCGGGTCTTTAGCATCGTTATAACAATCATTATGTCC 80
Query 61 CACTTTGGTCAGTTTGACGCAAGAACAAGTCTTAACGTTCTGAGTTTCGGTGCAAACCCA 120
||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||
Sbjct 81 CACTTTGGTCAGTTTGACGCAAGAACAAGTCTTAACGTTCTGAGTTTTGGCGCAAAACCA 140
Query 121 AACGGGATCGTAGAGTCGGCAAAAGCCTTTTCGGATGCATGGGATGCTGCGTGTGGAGTG 180
|| || || ||||| || | |||||||||||| |||||||||||||| || |||||||||
Sbjct 141 AATGGCATGGTAGATTCAGTAAAAGCCTTTTCAGATGCATGGGATGCCGCATGTGGAGTG 200
Query 181 GAAGACTCAGTTGTTATTTACGTCCC-AAAGGGAAGGTATTTGGTTAGTGGGGAGGTTAG 239
| ||| ||||| || |||||||| || ||||| ||||||||||||||||||||||||| |
Sbjct 201 GCAGATTCAGTCGTAATTTACGTACCGAAAGG-AAGGTATTTGGTTAGTGGGGAGGTTCG 259
Query 240 GTTCGAAGGAGAAAGTTGCAAAAGCCGTGAGATAACCCTAAGGATTGACGGAACTTTAAT 299
|||||||||||||||||||| ||||| ||||||||||||||||||||| || ||||||||
Sbjct 260 GTTCGAAGGAGAAAGTTGCAGAAGCCATGAGATAACCCTAAGGATTGATGGGACTTTAAT 319
Query 300 TGGTCCTCAAGACTACAGTTTGCTTGGGAAAAAAGAAAACTGGTTTAGTTTTAGTGGTGT 359
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 320 TGGTCCTCAAGACTACAATTTGCTTGGGAAAAAAGAAAATTGGTTTAGTTTTAGTGGTGT 379
Query 360 TCACAATGTTACGGTTCTTGGAGGTTCTTTTGATGCTAAGGGATCAACCTTGTGGAGTTG 419
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 380 TCACAATGTTACGATTCTTGGAGGTTCTTTTGATGCTAAGGGAACAACCTTGTGGAATTG 439
Query 420 CAAGGCTAATGGTTACAACTGCCCTGAAGGTGCAACGACATTGAGATTCATGGACTCAAA 479
||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 440 CAAAGCCAATGGTTACAATTGCCCTGAAGGTGCAACGACATTGAGATTCATGGACTCATA 499
Query 480 CAACGTGAAGATCAAAGGAGTATTATCGTTGAATAGCCAATTGTTCCACATAGCAATAAA 539
| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 500 CGACGTGAAGATCAAAGGAGTATTATCATTGAATAGCCAATTATTCCACATAGCAATAAA 559
Query 540 CCGTTGCAGAAACATAAAGATTGAAGATGTCCGAATCATAGCACCCGATGAGAGTCCTAA 599
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 560 CCGTTGCAGAAACATAAAGATTGAAGATGTCCGAATCATAGCACCAGATGAGAGTCCTAA 619
Query 600 CACTGATGGCATTCACATTCAGCTATCTACCGATATCGAAGTCCGAAATGCTTCCATCAA 659
||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 620 CACAGATGGCATTCACATTCAATTATCTACCGATATCGAAGTCCAAAATGCTTCCATCAA 679
Query 660 AACCGGAGACGATTGTATCTCAATCGGACCAGGTACAAAGAACCTTATGGTCGATGGGAT 719
|||||| |||||||||||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct 680 AACCGGTGACGATTGTATCTCGATCGGACCCGGTACAAAGAACCTTATGGTTGATGGGAT 739
Query 720 CACTTGTGGTCCTGGACATGGAATCAGCATTGGGAGCTTAGCAAAGTCCATAGAGGAGCA 779
|||||| |||||||||||||| || ||||||||||||||||||||||||| |||||||||
Sbjct 740 CACTTGCGGTCCTGGACATGGGATTAGCATTGGGAGCTTAGCAAAGTCCACAGAGGAGCA 799
Query 780 AGGCGTGGAAAACGTAACTGTGAAGAATGCTGTGTTTGTACGGACGGACAATGGGCTTAG 839
|||||| ||||| || |||||||||| |||||||||||||||||||||||||| || ||
Sbjct 800 AGGCGTAGAAAATGTGACTGTGAAGAGGGCTGTGTTTGTACGGACGGACAATGGACTAAG 859
Query 840 GATCAAGTCGTGGCCGCGACATAGCAACGGGTTCGTGGAGAGGGTCCGGTTCTTAGGAGC 899
||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 860 GATAAAGTCGTGGCCACGACATAGCAACGGGTTCGTGGAGAGGGTTCGGTTCTTAGGGGC 919
Query 900 TATTATGGTTAATGTCTCATATCCTATCCTCATTGATCAGAACTATTGCCCTGGCGATTC 959
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 920 TCTTATGGTTAATGTCTCATATCCTATCCTCATTGATCAGAACTATTGCCCTGGCGATTC 979
Query 960 TTCTTGCCCTTCTCAGGAGTCAGGAATCAAAATAAACGATGTAATATATAGTGGAATCAT 1019
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
Sbjct 980 TTCTTGCCCTTCTCAGGAGTCGGGAATCAAAATAAACGATGTAATATACAGTGGAATAAA 1039
Query 1020 GGGAACATCGGCCACAGAGATTGCTATAAAAATGGATTGCAGTGAGAAAGTCCCATGCAC 1079
|||||| ||||||||| || |||||||||| ||||||||||||||| |||||||||||||
Sbjct 1040 GGGAACGTCGGCCACAAAGGTTGCTATAAAGATGGATTGCAGTGAGCAAGTCCCATGCAC 1099
Query 1080 TGGGATTCGAATGCAGGCAATTAATCTAACTTCTTACGGTGAAGCAGCAAAGACTTCTTG 1139
||||||||||||||||||||||||||||| || ||| |||||||||||| ||||||||||
Sbjct 1100 TGGGATTCGAATGCAGGCAATTAATCTAAATTATTATGGTGAAGCAGCAGAGACTTCTTG 1159
Query 1140 CACCAATGTTTCTGGTAAGCAACTTGGATTGGTTACACCTAGTGGATGT 1188
||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1160 CACAAATGTTTCTGGTAAGCAACTTGGTTTGGTTACACCTAGTGGATGT 1208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44565689973
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5